Protein–RNA interactions for Protein: Q9UK41

VPS28, Vacuolar protein sorting-associated protein 28 homolog, humanhuman

Predictions only

Length 221 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28Q9UK41 LRRC49-224ENST00000560691 2531 ntTSL 2 BASIC3.63□□□□□ -1.83
VPS28Q9UK41 MIPOL1-206ENST00000545536 2073 ntTSL 5 BASIC3.63□□□□□ -1.83
VPS28Q9UK41 PKN2-AS1-202ENST00000458097 3542 ntTSL 2 BASIC3.62□□□□□ -1.83
VPS28Q9UK41 FAM214A-216ENST00000619572 3548 ntAPPRIS P1 TSL 1 (best) BASIC3.62□□□□□ -1.83
VPS28Q9UK41 ANKRD26P2-201ENST00000445530 1710 ntBASIC3.62□□□□□ -1.83
VPS28Q9UK41 SERPINI2-209ENST00000616363 1769 ntTSL 5 BASIC3.62□□□□□ -1.83
VPS28Q9UK41 OR4G2P-202ENST00000641004 1759 ntBASIC3.62□□□□□ -1.83
VPS28Q9UK41 U8.14-201ENST00000390843 143 ntBASIC3.62□□□□□ -1.83
VPS28Q9UK41 TEX41-202ENST00000414256 604 ntTSL 5 BASIC3.62□□□□□ -1.83
VPS28Q9UK41 RPS27AP14-201ENST00000422868 454 ntBASIC3.62□□□□□ -1.83
VPS28Q9UK41 AC022537.1-201ENST00000435271 446 ntTSL 3 BASIC3.62□□□□□ -1.83
VPS28Q9UK41 LARP1BP3-201ENST00000437229 869 ntBASIC3.62□□□□□ -1.83
VPS28Q9UK41 AL158069.1-201ENST00000454131 455 ntTSL 5 BASIC3.62□□□□□ -1.83
VPS28Q9UK41 RPL30P5-201ENST00000494923 336 ntBASIC3.62□□□□□ -1.83
VPS28Q9UK41 AC108935.1-201ENST00000504874 518 ntTSL 2 BASIC3.62□□□□□ -1.83
VPS28Q9UK41 MTND1P22-201ENST00000510572 951 ntBASIC3.62□□□□□ -1.83
VPS28Q9UK41 RNU6-711P-201ENST00000517255 106 ntBASIC3.62□□□□□ -1.83
VPS28Q9UK41 AC104233.2-201ENST00000518922 414 ntTSL 3 BASIC3.62□□□□□ -1.83
VPS28Q9UK41 AC091996.1-201ENST00000522274 600 ntTSL 3 BASIC3.62□□□□□ -1.83
VPS28Q9UK41 AP000442.2-202ENST00000531311 601 ntTSL 3 BASIC3.62□□□□□ -1.83
VPS28Q9UK41 AC010175.1-201ENST00000538219 224 ntTSL 5 BASIC3.62□□□□□ -1.83
VPS28Q9UK41 AP000786.1-201ENST00000541092 581 ntTSL 4 BASIC3.62□□□□□ -1.83
VPS28Q9UK41 PPFIA2-AS1-205ENST00000550938 790 ntTSL 3 BASIC3.62□□□□□ -1.83
VPS28Q9UK41 LINC01735-201ENST00000568112 279 ntTSL 3 BASIC3.62□□□□□ -1.83
VPS28Q9UK41 MIR7515HG-243ENST00000591400 1067 ntTSL 5 BASIC3.62□□□□□ -1.83
VPS28Q9UK41 AC097467.3-208ENST00000593486 670 ntTSL 5 BASIC3.62□□□□□ -1.83
VPS28Q9UK41 NIFKP6-201ENST00000598115 845 ntBASIC3.62□□□□□ -1.83
VPS28Q9UK41 AC024220.1-201ENST00000603675 484 ntBASIC3.62□□□□□ -1.83
VPS28Q9UK41 CLPTM1LP1-201ENST00000604519 484 ntBASIC3.62□□□□□ -1.83
VPS28Q9UK41 RNF219-AS1-205ENST00000605996 792 ntTSL 5 BASIC3.62□□□□□ -1.83
VPS28Q9UK41 AL360219.1-201ENST00000610230 366 ntBASIC3.62□□□□□ -1.83
VPS28Q9UK41 TUG1_2.1-201ENST00000614234 87 ntBASIC3.62□□□□□ -1.83
VPS28Q9UK41 AC013476.2-201ENST00000614456 459 ntBASIC3.62□□□□□ -1.83
VPS28Q9UK41 HOTAIRM1_2.1-201ENST00000616712 215 ntBASIC3.62□□□□□ -1.83
VPS28Q9UK41 AC112204.3-201ENST00000623822 332 ntBASIC3.62□□□□□ -1.83
VPS28Q9UK41 UBE2E2-207ENST00000628311 267 ntTSL 5 BASIC3.62□□□□□ -1.83
VPS28Q9UK41 AC107029.2-201ENST00000462011 2305 ntTSL 2 BASIC3.62□□□□□ -1.83
VPS28Q9UK41 SENP7-204ENST00000394085 1483 ntTSL 1 (best) BASIC3.61□□□□□ -1.83
VPS28Q9UK41 PCAT4-201ENST00000504263 2091 ntTSL 1 (best) BASIC3.61□□□□□ -1.83
VPS28Q9UK41 CR383658.2-201ENST00000547576 1525 ntBASIC3.61□□□□□ -1.83
VPS28Q9UK41 ZNF483-201ENST00000309235 3655 ntAPPRIS P1 TSL 1 (best) BASIC3.61□□□□□ -1.83
VPS28Q9UK41 DNAH12-201ENST00000311202 1555 ntTSL 2 BASIC3.61□□□□□ -1.83
VPS28Q9UK41 UTS2-202ENST00000361696 559 ntAPPRIS ALT2 TSL 1 (best) BASIC3.61□□□□□ -1.83
VPS28Q9UK41 SKINT1L-201ENST00000401057 817 ntBASIC3.61□□□□□ -1.83
VPS28Q9UK41 AL109755.1-201ENST00000401791 649 ntBASIC3.61□□□□□ -1.83
VPS28Q9UK41 U3.39-201ENST00000408569 239 ntBASIC3.61□□□□□ -1.83
VPS28Q9UK41 RNA5SP38-201ENST00000410750 119 ntBASIC3.61□□□□□ -1.83
VPS28Q9UK41 AL078645.1-201ENST00000414377 423 ntTSL 3 BASIC3.61□□□□□ -1.83
VPS28Q9UK41 AC093578.1-201ENST00000415219 368 ntBASIC3.61□□□□□ -1.83
VPS28Q9UK41 UBE2FP1-201ENST00000416536 447 ntBASIC3.61□□□□□ -1.83
VPS28Q9UK41 AC068533.1-201ENST00000418542 415 ntBASIC3.61□□□□□ -1.83
VPS28Q9UK41 RPL31P12-201ENST00000422587 358 ntBASIC3.61□□□□□ -1.83
VPS28Q9UK41 LINC02095-201ENST00000430908 346 ntTSL 2 BASIC3.61□□□□□ -1.83
VPS28Q9UK41 FTH1P1-201ENST00000437933 532 ntBASIC3.61□□□□□ -1.83
VPS28Q9UK41 HMGB3P8-201ENST00000449709 577 ntBASIC3.61□□□□□ -1.83
VPS28Q9UK41 CYCSP35-201ENST00000451978 304 ntBASIC3.61□□□□□ -1.83
VPS28Q9UK41 AC006539.3-201ENST00000454258 129 ntBASIC3.61□□□□□ -1.83
VPS28Q9UK41 ASH1L-IT1-201ENST00000458371 448 ntTSL 5 BASIC3.61□□□□□ -1.83
VPS28Q9UK41 LINC01445-202ENST00000458615 679 ntTSL 2 BASIC3.61□□□□□ -1.83
VPS28Q9UK41 RN7SL330P-201ENST00000469709 307 ntBASIC3.61□□□□□ -1.83
VPS28Q9UK41 AC023598.1-201ENST00000472521 361 ntBASIC3.61□□□□□ -1.83
VPS28Q9UK41 RN7SL293P-201ENST00000481765 281 ntBASIC3.61□□□□□ -1.83
VPS28Q9UK41 MRPS33P3-201ENST00000513456 322 ntBASIC3.61□□□□□ -1.83
VPS28Q9UK41 AC124947.2-202ENST00000552735 133 ntBASIC3.61□□□□□ -1.83
VPS28Q9UK41 AL355836.1-201ENST00000555951 870 ntBASIC3.61□□□□□ -1.83
VPS28Q9UK41 OR4H12P-201ENST00000556269 907 ntBASIC3.61□□□□□ -1.83
VPS28Q9UK41 AL442163.1-201ENST00000557251 515 ntTSL 5 BASIC3.61□□□□□ -1.83
VPS28Q9UK41 TGIF1P1-201ENST00000558095 802 ntBASIC3.61□□□□□ -1.83
VPS28Q9UK41 AC087463.4-202ENST00000566676 579 ntTSL 3 BASIC3.61□□□□□ -1.83
VPS28Q9UK41 AL158211.1-201ENST00000566763 763 ntBASIC3.61□□□□□ -1.83
VPS28Q9UK41 AL133383.1-201ENST00000569292 901 ntTSL 1 (best) BASIC3.61□□□□□ -1.83
VPS28Q9UK41 MIR5047-201ENST00000579212 100 ntBASIC3.61□□□□□ -1.83
VPS28Q9UK41 PPP3CB-AS1-206ENST00000595935 675 ntTSL 5 BASIC3.61□□□□□ -1.83
VPS28Q9UK41 AC068790.3-201ENST00000602988 553 ntBASIC3.61□□□□□ -1.83
VPS28Q9UK41 AD001527.1-201ENST00000604228 379 ntTSL 5 BASIC3.61□□□□□ -1.83
VPS28Q9UK41 AC090132.2-201ENST00000615881 347 ntBASIC3.61□□□□□ -1.83
VPS28Q9UK41 AC084757.4-201ENST00000616350 526 ntBASIC3.61□□□□□ -1.83
VPS28Q9UK41 5S_rRNA.12-201ENST00000617631 107 ntBASIC3.61□□□□□ -1.83
VPS28Q9UK41 ABCC9-206ENST00000621589 450 ntTSL 5 BASIC3.61□□□□□ -1.83
VPS28Q9UK41 AC244517.5-201ENST00000624139 722 ntTSL 3 BASIC3.61□□□□□ -1.83
VPS28Q9UK41 AC006927.3-201ENST00000638789 384 ntBASIC3.61□□□□□ -1.83
VPS28Q9UK41 RNF6-201ENST00000346166 3282 ntAPPRIS P1 TSL 1 (best) BASIC3.61□□□□□ -1.83
VPS28Q9UK41 FNDC3A-202ENST00000398316 5714 ntTSL 1 (best) BASIC3.61□□□□□ -1.83
VPS28Q9UK41 MUC15-205ENST00000529533 2084 ntTSL 1 (best) BASIC3.61□□□□□ -1.83
VPS28Q9UK41 POLK-217ENST00000515295 1438 ntTSL 1 (best) BASIC3.61□□□□□ -1.83
VPS28Q9UK41 SYTL2-203ENST00000359152 4123 ntAPPRIS ALT1 TSL 1 (best) BASIC3.6□□□□□ -1.83
VPS28Q9UK41 XRCC4-203ENST00000396027 1530 ntAPPRIS ALT1 TSL 5 BASIC3.6□□□□□ -1.83
VPS28Q9UK41 DICER1-203ENST00000526495 10331 ntAPPRIS P1 TSL 5 BASIC3.6□□□□□ -1.83
VPS28Q9UK41 FOXP2-206ENST00000393491 6085 ntTSL 5 BASIC3.6□□□□□ -1.83
VPS28Q9UK41 ROCK1P1-203ENST00000608049 2457 ntTSL 1 (best) BASIC3.6□□□□□ -1.83
VPS28Q9UK41 MACF1-201ENST00000289893 19141 ntTSL 5 BASIC3.6□□□□□ -1.83
VPS28Q9UK41 OR10A7-201ENST00000326258 951 ntAPPRIS P1 BASIC3.6□□□□□ -1.83
VPS28Q9UK41 OR6C70-201ENST00000327335 939 ntAPPRIS P1 BASIC3.6□□□□□ -1.83
VPS28Q9UK41 FRG1CP-201ENST00000358464 769 ntBASIC3.6□□□□□ -1.83
VPS28Q9UK41 RNA5SP50-201ENST00000363731 107 ntBASIC3.6□□□□□ -1.83
VPS28Q9UK41 MIR19A-201ENST00000384878 82 ntBASIC3.6□□□□□ -1.83
VPS28Q9UK41 AL136116.1-201ENST00000403591 381 ntBASIC3.6□□□□□ -1.83
VPS28Q9UK41 AC004543.1-201ENST00000418764 369 ntTSL 5 BASIC3.6□□□□□ -1.83
VPS28Q9UK41 AC104653.1-201ENST00000420579 578 ntTSL 2 BASIC3.6□□□□□ -1.83
VPS28Q9UK41 AL391336.1-201ENST00000424678 484 ntTSL 3 BASIC3.6□□□□□ -1.83
Retrieved 100 of 98,524 protein–RNA pairs in 87.4 ms