Protein–RNA interactions for Protein: Q9UHB6

LIMA1, LIM domain and actin-binding protein 1, humanhuman

Known RBP Predictions only

Length 759 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1Q9UHB6 AC083760.1-201ENST00000589621 670 ntBASIC3.69□□□□□ -1.82
LIMA1Q9UHB6 AC022146.1-201ENST00000595307 847 ntBASIC3.69□□□□□ -1.82
LIMA1Q9UHB6 AC006557.5-201ENST00000603126 811 ntBASIC3.69□□□□□ -1.82
LIMA1Q9UHB6 U1.23-201ENST00000610293 146 ntBASIC3.69□□□□□ -1.82
LIMA1Q9UHB6 MIR7851-201ENST00000610611 160 ntBASIC3.69□□□□□ -1.82
LIMA1Q9UHB6 RNU1-68P-201ENST00000615382 146 ntBASIC3.69□□□□□ -1.82
LIMA1Q9UHB6 U1.39-201ENST00000621562 146 ntBASIC3.69□□□□□ -1.82
LIMA1Q9UHB6 ARID2-206ENST00000457135 4356 ntTSL 1 (best) BASIC3.69□□□□□ -1.82
LIMA1Q9UHB6 FKTN-209ENST00000602661 2576 ntAPPRIS P1 TSL 1 (best) BASIC3.69□□□□□ -1.82
LIMA1Q9UHB6 MUC7-203ENST00000456088 2479 ntAPPRIS P2 TSL 4 BASIC3.69□□□□□ -1.82
LIMA1Q9UHB6 UFM1-201ENST00000239878 3138 ntAPPRIS P1 TSL 1 (best) BASIC3.69□□□□□ -1.82
LIMA1Q9UHB6 RASA1-202ENST00000456692 3776 ntAPPRIS ALT2 TSL 1 (best) BASIC3.69□□□□□ -1.82
LIMA1Q9UHB6 ZNF85-201ENST00000300540 1531 ntTSL 1 (best) BASIC3.69□□□□□ -1.82
LIMA1Q9UHB6 RGS13-201ENST00000391995 1505 ntAPPRIS P1 TSL 1 (best) BASIC3.69□□□□□ -1.82
LIMA1Q9UHB6 LINC00890-202ENST00000569275 4595 ntAPPRIS P1 TSL 1 (best) BASIC3.69□□□□□ -1.82
LIMA1Q9UHB6 CSNK1G3-203ENST00000361991 2424 ntAPPRIS P3 TSL 1 (best) BASIC3.69□□□□□ -1.82
LIMA1Q9UHB6 FIGNL1-212ENST00000613602 3187 ntAPPRIS P1 TSL 5 BASIC3.68□□□□□ -1.82
LIMA1Q9UHB6 AF127577.6-201ENST00000623352 2191 ntBASIC3.68□□□□□ -1.82
LIMA1Q9UHB6 ZNF883-201ENST00000619044 2051 ntAPPRIS P1 TSL 5 BASIC3.68□□□□□ -1.82
LIMA1Q9UHB6 TAS2R3-201ENST00000247879 1101 ntAPPRIS P1 BASIC3.68□□□□□ -1.82
LIMA1Q9UHB6 OR10A7-201ENST00000326258 951 ntAPPRIS P1 BASIC3.68□□□□□ -1.82
LIMA1Q9UHB6 RPL7P26-201ENST00000333817 754 ntBASIC3.68□□□□□ -1.82
LIMA1Q9UHB6 Y_RNA.46-201ENST00000362695 102 ntBASIC3.68□□□□□ -1.82
LIMA1Q9UHB6 RNU5E-8P-201ENST00000363502 116 ntBASIC3.68□□□□□ -1.82
LIMA1Q9UHB6 SNORD116-2-201ENST00000384274 95 ntBASIC3.68□□□□□ -1.82
LIMA1Q9UHB6 SNORD116-6-201ENST00000384711 96 ntBASIC3.68□□□□□ -1.82
LIMA1Q9UHB6 Z93403.1-201ENST00000411879 895 ntTSL 5 BASIC3.68□□□□□ -1.82
LIMA1Q9UHB6 AL023581.1-201ENST00000423500 455 ntTSL 2 BASIC3.68□□□□□ -1.82
LIMA1Q9UHB6 AC233728.2-201ENST00000425348 757 ntBASIC3.68□□□□□ -1.82
LIMA1Q9UHB6 FTH1P1-201ENST00000437933 532 ntBASIC3.68□□□□□ -1.82
LIMA1Q9UHB6 RABEPKP1-201ENST00000440529 1026 ntBASIC3.68□□□□□ -1.82
LIMA1Q9UHB6 RPL26P6-201ENST00000440913 438 ntBASIC3.68□□□□□ -1.82
LIMA1Q9UHB6 AP1S3-208ENST00000446015 499 ntAPPRIS ALT1 TSL 1 (best) BASIC3.68□□□□□ -1.82
LIMA1Q9UHB6 CASP1-203ENST00000446369 948 ntTSL 1 (best) BASIC3.68□□□□□ -1.82
LIMA1Q9UHB6 PCCA-AS1-203ENST00000455958 356 ntTSL 3 BASIC3.68□□□□□ -1.82
LIMA1Q9UHB6 LINC01445-202ENST00000458615 679 ntTSL 2 BASIC3.68□□□□□ -1.82
LIMA1Q9UHB6 SNRPGP3-201ENST00000469405 227 ntBASIC3.68□□□□□ -1.82
LIMA1Q9UHB6 CBX3P3-201ENST00000508108 532 ntBASIC3.68□□□□□ -1.82
LIMA1Q9UHB6 AF131216.2-201ENST00000512316 564 ntBASIC3.68□□□□□ -1.82
LIMA1Q9UHB6 AC093766.1-202ENST00000513400 718 ntTSL 3 BASIC3.68□□□□□ -1.82
LIMA1Q9UHB6 AC106744.2-201ENST00000513955 898 ntTSL 5 BASIC3.68□□□□□ -1.82
LIMA1Q9UHB6 AC010255.3-204ENST00000514637 454 ntTSL 2 BASIC3.68□□□□□ -1.82
LIMA1Q9UHB6 RN7SKP13-201ENST00000515933 244 ntBASIC3.68□□□□□ -1.82
LIMA1Q9UHB6 RNU6-1003P-201ENST00000517099 105 ntBASIC3.68□□□□□ -1.82
LIMA1Q9UHB6 AC136475.4-201ENST00000534271 280 ntTSL 5 BASIC3.68□□□□□ -1.82
LIMA1Q9UHB6 AC092718.6-202ENST00000563072 408 ntTSL 2 BASIC3.68□□□□□ -1.82
LIMA1Q9UHB6 MIR3160-1-201ENST00000577972 85 ntBASIC3.68□□□□□ -1.82
LIMA1Q9UHB6 AL157938.2-203ENST00000589540 931 ntTSL 5 BASIC3.68□□□□□ -1.82
LIMA1Q9UHB6 AL590229.1-201ENST00000603497 542 ntBASIC3.68□□□□□ -1.82
LIMA1Q9UHB6 AC105129.3-201ENST00000605455 485 ntBASIC3.68□□□□□ -1.82
LIMA1Q9UHB6 AC004067.1-201ENST00000608733 700 ntBASIC3.68□□□□□ -1.82
LIMA1Q9UHB6 TMBIM4-213ENST00000613669 851 ntTSL 5 BASIC3.68□□□□□ -1.82
LIMA1Q9UHB6 AC112204.3-201ENST00000623822 332 ntBASIC3.68□□□□□ -1.82
LIMA1Q9UHB6 NBPF20-201ENST00000369373 18760 ntAPPRIS ALT2 TSL 5 BASIC3.68□□□□□ -1.82
LIMA1Q9UHB6 VPS13C-203ENST00000395896 14579 ntAPPRIS ALT2 TSL 1 (best) BASIC3.67□□□□□ -1.82
LIMA1Q9UHB6 SLC8A1-207ENST00000406785 20987 ntTSL 1 (best) BASIC3.67□□□□□ -1.82
LIMA1Q9UHB6 IBTK-209ENST00000510291 4109 ntTSL 1 (best) BASIC3.67□□□□□ -1.82
LIMA1Q9UHB6 IL1RL1-204ENST00000409584 2693 ntTSL 5 BASIC3.67□□□□□ -1.82
LIMA1Q9UHB6 RNU4-21P-201ENST00000362802 126 ntBASIC3.67□□□□□ -1.82
LIMA1Q9UHB6 RNA5SP515-201ENST00000364570 118 ntBASIC3.67□□□□□ -1.82
LIMA1Q9UHB6 LGI1-201ENST00000371413 1247 ntTSL 1 (best) BASIC3.67□□□□□ -1.82
LIMA1Q9UHB6 MEIG1-201ENST00000378240 507 ntAPPRIS P1 TSL 2 BASIC3.67□□□□□ -1.82
LIMA1Q9UHB6 RNU6-76P-201ENST00000384060 104 ntBASIC3.67□□□□□ -1.82
LIMA1Q9UHB6 SNORD17-201ENST00000390930 237 ntBASIC3.67□□□□□ -1.82
LIMA1Q9UHB6 RPS20P2-201ENST00000402520 389 ntBASIC3.67□□□□□ -1.82
LIMA1Q9UHB6 RNU4-65P-201ENST00000410473 140 ntBASIC3.67□□□□□ -1.82
LIMA1Q9UHB6 RPL17P12-201ENST00000413391 526 ntBASIC3.67□□□□□ -1.82
LIMA1Q9UHB6 AL022329.2-201ENST00000413494 660 ntTSL 5 BASIC3.67□□□□□ -1.82
LIMA1Q9UHB6 PPP1R11P2-201ENST00000423543 382 ntBASIC3.67□□□□□ -1.82
LIMA1Q9UHB6 AC093019.2-201ENST00000432294 384 ntTSL 3 BASIC3.67□□□□□ -1.82
LIMA1Q9UHB6 TRIM60P18-201ENST00000441518 828 ntBASIC3.67□□□□□ -1.82
LIMA1Q9UHB6 AL359915.2-203ENST00000457043 540 ntTSL 3 BASIC3.67□□□□□ -1.82
LIMA1Q9UHB6 RPL23AP62-201ENST00000463396 453 ntBASIC3.67□□□□□ -1.82
LIMA1Q9UHB6 LINC02077-201ENST00000465795 409 ntTSL 3 BASIC3.67□□□□□ -1.82
LIMA1Q9UHB6 AC055855.1-201ENST00000489563 579 ntBASIC3.67□□□□□ -1.82
LIMA1Q9UHB6 ENSA-210ENST00000503241 574 ntTSL 3 BASIC3.67□□□□□ -1.82
LIMA1Q9UHB6 AC109464.2-201ENST00000510242 943 ntBASIC3.67□□□□□ -1.82
LIMA1Q9UHB6 AC131956.2-201ENST00000510922 512 ntTSL 3 BASIC3.67□□□□□ -1.82
LIMA1Q9UHB6 OR5BM1P-201ENST00000512021 366 ntBASIC3.67□□□□□ -1.82
LIMA1Q9UHB6 RN7SKP21-201ENST00000516503 220 ntBASIC3.67□□□□□ -1.82
LIMA1Q9UHB6 SNORA31.22-201ENST00000517204 135 ntBASIC3.67□□□□□ -1.82
LIMA1Q9UHB6 AC103843.2-201ENST00000530523 682 ntBASIC3.67□□□□□ -1.82
LIMA1Q9UHB6 AP000907.2-201ENST00000530827 353 ntBASIC3.67□□□□□ -1.82
LIMA1Q9UHB6 AL356057.1-201ENST00000533798 831 ntBASIC3.67□□□□□ -1.82
LIMA1Q9UHB6 PRB1-204ENST00000546254 1170 ntAPPRIS ALT2 TSL 5 BASIC3.67□□□□□ -1.82
LIMA1Q9UHB6 LINC01467-201ENST00000554211 1187 ntTSL 1 (best) BASIC3.67□□□□□ -1.82
LIMA1Q9UHB6 AC099793.1-201ENST00000567538 285 ntTSL 3 BASIC3.67□□□□□ -1.82
LIMA1Q9UHB6 AL513324.1-201ENST00000575236 632 ntTSL 5 BASIC3.67□□□□□ -1.82
LIMA1Q9UHB6 MIR5697-201ENST00000578045 78 ntBASIC3.67□□□□□ -1.82
LIMA1Q9UHB6 MIR5047-201ENST00000579212 100 ntBASIC3.67□□□□□ -1.82
LIMA1Q9UHB6 LINC01894-201ENST00000580984 487 ntTSL 2 BASIC3.67□□□□□ -1.82
LIMA1Q9UHB6 AP001029.3-201ENST00000588063 596 ntBASIC3.67□□□□□ -1.82
LIMA1Q9UHB6 PPP3CB-AS1-206ENST00000595935 675 ntTSL 5 BASIC3.67□□□□□ -1.82
LIMA1Q9UHB6 AC110760.3-201ENST00000598794 467 ntBASIC3.67□□□□□ -1.82
LIMA1Q9UHB6 VN1R85P-201ENST00000601587 426 ntBASIC3.67□□□□□ -1.82
LIMA1Q9UHB6 OR10AB1P-201ENST00000609613 938 ntBASIC3.67□□□□□ -1.82
LIMA1Q9UHB6 AC027807.2-201ENST00000616099 408 ntBASIC3.67□□□□□ -1.82
LIMA1Q9UHB6 SNORD39.4-201ENST00000620099 78 ntBASIC3.67□□□□□ -1.82
LIMA1Q9UHB6 AC026422.1-201ENST00000623961 452 ntBASIC3.67□□□□□ -1.82
LIMA1Q9UHB6 AC005832.2-201ENST00000538921 1430 ntBASIC3.67□□□□□ -1.82
Retrieved 100 of 98,524 protein–RNA pairs in 95.8 ms