Protein–RNA interactions for Protein: Q9NUW8

TDP1, Tyrosyl-DNA phosphodiesterase 1, humanhuman

Predictions only

Length 608 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TDP1Q9NUW8 TRIQK-214ENST00000521988 3672 ntAPPRIS P1 TSL 1 (best) BASIC4.3□□□□□ -1.72
TDP1Q9NUW8 PICALM-209ENST00000528398 2049 ntTSL 2 BASIC4.29□□□□□ -1.72
TDP1Q9NUW8 AL645937.1-201ENST00000641739 1652 ntBASIC4.29□□□□□ -1.72
TDP1Q9NUW8 C8orf34-202ENST00000337103 3652 ntAPPRIS ALT2 TSL 1 (best) BASIC4.29□□□□□ -1.72
TDP1Q9NUW8 CDR1-201ENST00000370532 2467 ntAPPRIS P1 BASIC4.29□□□□□ -1.72
TDP1Q9NUW8 DLD-204ENST00000437604 1859 ntTSL 2 BASIC4.29□□□□□ -1.72
TDP1Q9NUW8 LINC01847-201ENST00000522627 5607 ntTSL 1 (best) BASIC4.29□□□□□ -1.72
TDP1Q9NUW8 HSPE1P11-201ENST00000339579 310 ntBASIC4.29□□□□□ -1.72
TDP1Q9NUW8 RNY3P3-201ENST00000363816 102 ntBASIC4.29□□□□□ -1.72
TDP1Q9NUW8 AL359837.1-201ENST00000381357 287 ntBASIC4.29□□□□□ -1.72
TDP1Q9NUW8 SNORA69-201ENST00000383895 132 ntBASIC4.29□□□□□ -1.72
TDP1Q9NUW8 MIR554-201ENST00000384874 96 ntBASIC4.29□□□□□ -1.72
TDP1Q9NUW8 MIR195-201ENST00000385194 87 ntBASIC4.29□□□□□ -1.72
TDP1Q9NUW8 MDM2-208ENST00000393410 732 ntTSL 1 (best) BASIC4.29□□□□□ -1.72
TDP1Q9NUW8 GALNT3-202ENST00000409882 2107 ntTSL 1 (best) BASIC4.29□□□□□ -1.72
TDP1Q9NUW8 RN7SKP159-201ENST00000410657 292 ntBASIC4.29□□□□□ -1.72
TDP1Q9NUW8 HSPE1P12-201ENST00000412576 301 ntBASIC4.29□□□□□ -1.72
TDP1Q9NUW8 SRGAP3-AS1-201ENST00000414633 428 ntTSL 2 BASIC4.29□□□□□ -1.72
TDP1Q9NUW8 MTCO3P12-201ENST00000416718 547 ntBASIC4.29□□□□□ -1.72
TDP1Q9NUW8 AC016710.1-201ENST00000421326 466 ntTSL 3 BASIC4.29□□□□□ -1.72
TDP1Q9NUW8 AL138759.1-201ENST00000432120 645 ntTSL 2 BASIC4.29□□□□□ -1.72
TDP1Q9NUW8 Z83839.2-201ENST00000436294 274 ntTSL 5 BASIC4.29□□□□□ -1.72
TDP1Q9NUW8 SEPT14P3-201ENST00000439401 183 ntBASIC4.29□□□□□ -1.72
TDP1Q9NUW8 RPS29P7-201ENST00000439662 171 ntBASIC4.29□□□□□ -1.72
TDP1Q9NUW8 AC016691.1-201ENST00000441321 413 ntBASIC4.29□□□□□ -1.72
TDP1Q9NUW8 AL845311.1-201ENST00000444791 891 ntTSL 3 BASIC4.29□□□□□ -1.72
TDP1Q9NUW8 AL732372.2-207ENST00000445840 183 ntBASIC4.29□□□□□ -1.72
TDP1Q9NUW8 AP000431.2-201ENST00000450653 790 ntTSL 2 BASIC4.29□□□□□ -1.72
TDP1Q9NUW8 SNRPGP6-201ENST00000451124 220 ntBASIC4.29□□□□□ -1.72
TDP1Q9NUW8 SEPT14P2-201ENST00000453405 183 ntBASIC4.29□□□□□ -1.72
TDP1Q9NUW8 AC092832.2-201ENST00000456621 389 ntTSL 2 BASIC4.29□□□□□ -1.72
TDP1Q9NUW8 RNU6-261P-201ENST00000459506 102 ntBASIC4.29□□□□□ -1.72
TDP1Q9NUW8 AC026353.1-201ENST00000470523 558 ntTSL 2 BASIC4.29□□□□□ -1.72
TDP1Q9NUW8 AC098799.2-201ENST00000509466 868 ntBASIC4.29□□□□□ -1.72
TDP1Q9NUW8 AC117522.1-201ENST00000509821 380 ntBASIC4.29□□□□□ -1.72
TDP1Q9NUW8 SEPT14P4-201ENST00000513445 186 ntBASIC4.29□□□□□ -1.72
TDP1Q9NUW8 AC004053.1-201ENST00000515127 575 ntTSL 5 BASIC4.29□□□□□ -1.72
TDP1Q9NUW8 SNORD27.1-201ENST00000516319 72 ntBASIC4.29□□□□□ -1.72
TDP1Q9NUW8 RNU2-10P-201ENST00000516375 211 ntBASIC4.29□□□□□ -1.72
TDP1Q9NUW8 AC084768.1-201ENST00000518926 923 ntTSL 3 BASIC4.29□□□□□ -1.72
TDP1Q9NUW8 HMGB1P41-201ENST00000520234 440 ntBASIC4.29□□□□□ -1.72
TDP1Q9NUW8 FO082796.1-201ENST00000523795 183 ntBASIC4.29□□□□□ -1.72
TDP1Q9NUW8 AC026116.1-201ENST00000551729 474 ntTSL 3 BASIC4.29□□□□□ -1.72
TDP1Q9NUW8 RN7SL703P-201ENST00000578485 302 ntBASIC4.29□□□□□ -1.72
TDP1Q9NUW8 AC090403.1-205ENST00000580883 516 ntTSL 2 BASIC4.29□□□□□ -1.72
TDP1Q9NUW8 NRBF2P5-201ENST00000603087 788 ntBASIC4.29□□□□□ -1.72
TDP1Q9NUW8 AL606490.9-201ENST00000603331 271 ntBASIC4.29□□□□□ -1.72
TDP1Q9NUW8 AL031666.3-201ENST00000609320 1006 ntBASIC4.29□□□□□ -1.72
TDP1Q9NUW8 KCNQ1OT1_3.1-201ENST00000616504 116 ntBASIC4.29□□□□□ -1.72
TDP1Q9NUW8 RDM1-221ENST00000617591 432 ntTSL 1 (best) BASIC4.29□□□□□ -1.72
TDP1Q9NUW8 AL603758.1-201ENST00000618654 241 ntBASIC4.29□□□□□ -1.72
TDP1Q9NUW8 AC068631.1-221ENST00000626006 592 ntTSL 5 BASIC4.29□□□□□ -1.72
TDP1Q9NUW8 USH2A-202ENST00000366942 6320 ntTSL 1 (best) BASIC4.29□□□□□ -1.72
TDP1Q9NUW8 MPDZ-215ENST00000541718 7603 ntAPPRIS P3 TSL 1 (best) BASIC4.29□□□□□ -1.72
TDP1Q9NUW8 MPDZ-211ENST00000536827 6176 ntAPPRIS ALT2 TSL 1 (best) BASIC4.29□□□□□ -1.72
TDP1Q9NUW8 CKAP2P1-201ENST00000555477 2049 ntBASIC4.29□□□□□ -1.72
TDP1Q9NUW8 SLC44A5-202ENST00000370859 3896 ntAPPRIS ALT2 TSL 2 BASIC4.29□□□□□ -1.72
TDP1Q9NUW8 INPP4B-220ENST00000513000 8831 ntAPPRIS P1 TSL 1 (best) BASIC4.29□□□□□ -1.72
TDP1Q9NUW8 LINC00862-201ENST00000367355 1417 ntTSL 1 (best) BASIC4.29□□□□□ -1.72
TDP1Q9NUW8 MAPK10-353ENST00000641803 8483 ntAPPRIS P2 BASIC4.28□□□□□ -1.72
TDP1Q9NUW8 DEPDC1-202ENST00000456315 5331 ntTSL 1 (best) BASIC4.28□□□□□ -1.72
TDP1Q9NUW8 C21orf91-201ENST00000284881 5433 ntAPPRIS P4 TSL 2 BASIC4.28□□□□□ -1.72
TDP1Q9NUW8 NFAT5-203ENST00000393742 13067 ntAPPRIS ALT1 TSL 1 (best) BASIC4.28□□□□□ -1.72
TDP1Q9NUW8 ZNF705A-201ENST00000359286 3455 ntAPPRIS P1 TSL 2 BASIC4.28□□□□□ -1.72
TDP1Q9NUW8 SOS1-203ENST00000426016 8517 ntAPPRIS P2 TSL 2 BASIC4.28□□□□□ -1.72
TDP1Q9NUW8 RNU6-451P-201ENST00000362921 107 ntBASIC4.28□□□□□ -1.72
TDP1Q9NUW8 AL591416.1-201ENST00000404015 867 ntBASIC4.28□□□□□ -1.72
TDP1Q9NUW8 RNU2-36P-201ENST00000410361 191 ntBASIC4.28□□□□□ -1.72
TDP1Q9NUW8 RNU4-65P-201ENST00000410473 140 ntBASIC4.28□□□□□ -1.72
TDP1Q9NUW8 CYCSP19-201ENST00000411715 316 ntBASIC4.28□□□□□ -1.72
TDP1Q9NUW8 AC007463.1-201ENST00000416534 734 ntTSL 3 BASIC4.28□□□□□ -1.72
TDP1Q9NUW8 UBE2FP1-201ENST00000416536 447 ntBASIC4.28□□□□□ -1.72
TDP1Q9NUW8 SSXP9-201ENST00000417503 292 ntBASIC4.28□□□□□ -1.72
TDP1Q9NUW8 SNRPEP10-201ENST00000420249 274 ntBASIC4.28□□□□□ -1.72
TDP1Q9NUW8 OR2AS1P-201ENST00000427827 319 ntBASIC4.28□□□□□ -1.72
TDP1Q9NUW8 MED13P1-201ENST00000428342 171 ntBASIC4.28□□□□□ -1.72
TDP1Q9NUW8 AL121601.2-201ENST00000438019 707 ntBASIC4.28□□□□□ -1.72
TDP1Q9NUW8 AC006011.1-201ENST00000442758 349 ntBASIC4.28□□□□□ -1.72
TDP1Q9NUW8 AL136972.1-201ENST00000443471 351 ntTSL 3 BASIC4.28□□□□□ -1.72
TDP1Q9NUW8 MTND5P20-201ENST00000448677 143 ntBASIC4.28□□□□□ -1.72
TDP1Q9NUW8 RN7SL542P-201ENST00000467147 294 ntBASIC4.28□□□□□ -1.72
TDP1Q9NUW8 CREM-230ENST00000474931 626 ntTSL 2 BASIC4.28□□□□□ -1.72
TDP1Q9NUW8 AC110792.1-201ENST00000491826 472 ntBASIC4.28□□□□□ -1.72
TDP1Q9NUW8 AC097375.2-201ENST00000510416 579 ntTSL 5 BASIC4.28□□□□□ -1.72
TDP1Q9NUW8 AC026801.2-201ENST00000515352 425 ntBASIC4.28□□□□□ -1.72
TDP1Q9NUW8 RNU7-51P-201ENST00000516560 62 ntBASIC4.28□□□□□ -1.72
TDP1Q9NUW8 FAM60DP-201ENST00000524174 632 ntBASIC4.28□□□□□ -1.72
TDP1Q9NUW8 AC136475.4-201ENST00000534271 280 ntTSL 5 BASIC4.28□□□□□ -1.72
TDP1Q9NUW8 AC073525.1-202ENST00000550049 732 ntTSL 3 BASIC4.28□□□□□ -1.72
TDP1Q9NUW8 HIF1AP1-201ENST00000553642 175 ntBASIC4.28□□□□□ -1.72
TDP1Q9NUW8 AC020891.1-201ENST00000558785 174 ntTSL 3 BASIC4.28□□□□□ -1.72
TDP1Q9NUW8 AC129492.2-201ENST00000577807 517 ntTSL 3 BASIC4.28□□□□□ -1.72
TDP1Q9NUW8 AC079070.1-201ENST00000578740 555 ntTSL 2 BASIC4.28□□□□□ -1.72
TDP1Q9NUW8 AC090616.5-202ENST00000582111 297 ntBASIC4.28□□□□□ -1.72
TDP1Q9NUW8 XIAPP1-201ENST00000603162 600 ntBASIC4.28□□□□□ -1.72
TDP1Q9NUW8 AL035413.2-201ENST00000604801 525 ntBASIC4.28□□□□□ -1.72
TDP1Q9NUW8 MIR6130-201ENST00000619419 109 ntBASIC4.28□□□□□ -1.72
TDP1Q9NUW8 AC009033.1-201ENST00000624279 431 ntBASIC4.28□□□□□ -1.72
TDP1Q9NUW8 ADAM29-201ENST00000359240 3325 ntAPPRIS P1 TSL 2 BASIC4.28□□□□□ -1.72
TDP1Q9NUW8 OR6C2-203ENST00000641516 1682 ntAPPRIS P1 BASIC4.28□□□□□ -1.72
Retrieved 100 of 98,524 protein–RNA pairs in 120.8 ms