Protein–RNA interactions for Protein: Q96RU2

USP28, Ubiquitin carboxyl-terminal hydrolase 28, humanhuman

Predictions only

Length 1,077 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP28Q96RU2 RNU6-1122P-201ENST00000384449 107 ntBASIC3.41□□□□□ -1.86
USP28Q96RU2 RNU6-253P-201ENST00000384730 105 ntBASIC3.41□□□□□ -1.86
USP28Q96RU2 MIR506-201ENST00000384998 124 ntBASIC3.41□□□□□ -1.86
USP28Q96RU2 MIR181B1-201ENST00000385240 110 ntBASIC3.41□□□□□ -1.86
USP28Q96RU2 U3.42-201ENST00000408746 214 ntBASIC3.41□□□□□ -1.86
USP28Q96RU2 RNU6-920P-201ENST00000410926 92 ntBASIC3.41□□□□□ -1.86
USP28Q96RU2 RNU4-78P-201ENST00000410940 126 ntBASIC3.41□□□□□ -1.86
USP28Q96RU2 LINC01427-201ENST00000420928 504 ntTSL 3 BASIC3.41□□□□□ -1.86
USP28Q96RU2 AC009276.1-201ENST00000422042 253 ntTSL 5 BASIC3.41□□□□□ -1.86
USP28Q96RU2 AL449983.1-201ENST00000430640 414 ntTSL 2 BASIC3.41□□□□□ -1.86
USP28Q96RU2 RPS29P6-201ENST00000438196 145 ntBASIC3.41□□□□□ -1.86
USP28Q96RU2 AC092427.1-201ENST00000439177 601 ntBASIC3.41□□□□□ -1.86
USP28Q96RU2 AL512271.1-201ENST00000439878 434 ntTSL 3 BASIC3.41□□□□□ -1.86
USP28Q96RU2 GACAT1-202ENST00000441383 540 ntTSL 4 BASIC3.41□□□□□ -1.86
USP28Q96RU2 VN1R10P-201ENST00000447106 875 ntBASIC3.41□□□□□ -1.86
USP28Q96RU2 AL157373.1-201ENST00000456036 276 ntTSL 3 BASIC3.41□□□□□ -1.86
USP28Q96RU2 RPL30P6-201ENST00000475925 342 ntBASIC3.41□□□□□ -1.86
USP28Q96RU2 AC108752.1-203ENST00000496674 339 ntTSL 5 BASIC3.41□□□□□ -1.86
USP28Q96RU2 XKRY-201ENST00000510392 1100 ntBASIC3.41□□□□□ -1.86
USP28Q96RU2 MTND1P22-201ENST00000510572 951 ntBASIC3.41□□□□□ -1.86
USP28Q96RU2 OR5BM1P-201ENST00000512021 366 ntBASIC3.41□□□□□ -1.86
USP28Q96RU2 AL353699.1-201ENST00000529078 365 ntTSL 3 BASIC3.41□□□□□ -1.86
USP28Q96RU2 LINC01481-201ENST00000552998 629 ntTSL 2 BASIC3.41□□□□□ -1.86
USP28Q96RU2 LINC01467-201ENST00000554211 1187 ntTSL 1 (best) BASIC3.41□□□□□ -1.86
USP28Q96RU2 OR4T1P-201ENST00000554933 911 ntBASIC3.41□□□□□ -1.86
USP28Q96RU2 LINC01491-201ENST00000558434 505 ntTSL 3 BASIC3.41□□□□□ -1.86
USP28Q96RU2 AC007598.2-201ENST00000569490 539 ntTSL 3 BASIC3.41□□□□□ -1.86
USP28Q96RU2 AC024270.4-201ENST00000570202 421 ntTSL 3 BASIC3.41□□□□□ -1.86
USP28Q96RU2 AC012146.1-204ENST00000570712 426 ntTSL 3 BASIC3.41□□□□□ -1.86
USP28Q96RU2 AP001981.2-201ENST00000603241 418 ntBASIC3.41□□□□□ -1.86
USP28Q96RU2 AC007563.2-202ENST00000607591 394 ntTSL 3 BASIC3.41□□□□□ -1.86
USP28Q96RU2 AL513477.2-201ENST00000607858 568 ntBASIC3.41□□□□□ -1.86
USP28Q96RU2 AC068722.2-201ENST00000618734 544 ntBASIC3.41□□□□□ -1.86
USP28Q96RU2 PLCE1-AS2-213ENST00000620469 432 ntTSL 5 BASIC3.41□□□□□ -1.86
USP28Q96RU2 CLECL1-204ENST00000621400 611 ntAPPRIS ALT2 TSL 5 BASIC3.41□□□□□ -1.86
USP28Q96RU2 BTG3-AS1-201ENST00000626994 552 ntTSL 4 BASIC3.41□□□□□ -1.86
USP28Q96RU2 NEB-204ENST00000409198 20637 ntAPPRIS P3 TSL 5 BASIC3.41□□□□□ -1.86
USP28Q96RU2 AL035425.3-201ENST00000564206 4996 ntBASIC3.41□□□□□ -1.86
USP28Q96RU2 LPP-221ENST00000618621 18277 ntTSL 1 (best) BASIC3.41□□□□□ -1.86
USP28Q96RU2 LPP-222ENST00000640853 18277 ntAPPRIS P1 TSL 1 (best) BASIC3.41□□□□□ -1.86
USP28Q96RU2 CCDC68-201ENST00000337363 1457 ntAPPRIS P1 TSL 2 BASIC3.41□□□□□ -1.86
USP28Q96RU2 AF165147.1-201ENST00000433310 6103 ntTSL 2 BASIC3.41□□□□□ -1.86
USP28Q96RU2 MME-216ENST00000615825 5523 ntAPPRIS P1 TSL 1 (best) BASIC3.4□□□□□ -1.86
USP28Q96RU2 AL445523.1-201ENST00000451184 1362 ntBASIC3.4□□□□□ -1.86
USP28Q96RU2 RXFP1-201ENST00000307765 3842 ntAPPRIS P1 TSL 1 (best) BASIC3.4□□□□□ -1.87
USP28Q96RU2 RNU6-500P-201ENST00000362349 107 ntBASIC3.4□□□□□ -1.87
USP28Q96RU2 SNORA63.1-201ENST00000362493 131 ntBASIC3.4□□□□□ -1.87
USP28Q96RU2 TMCO2-201ENST00000372766 739 ntAPPRIS P1 TSL 1 (best) BASIC3.4□□□□□ -1.87
USP28Q96RU2 AC016769.3-201ENST00000396562 315 ntBASIC3.4□□□□□ -1.87
USP28Q96RU2 ARF4P3-201ENST00000397387 509 ntBASIC3.4□□□□□ -1.87
USP28Q96RU2 AL023807.1-201ENST00000407932 359 ntBASIC3.4□□□□□ -1.87
USP28Q96RU2 RNU4-65P-201ENST00000410473 140 ntBASIC3.4□□□□□ -1.87
USP28Q96RU2 NDUFB4P5-201ENST00000415445 361 ntBASIC3.4□□□□□ -1.87
USP28Q96RU2 RAD23BP2-201ENST00000416003 1207 ntBASIC3.4□□□□□ -1.87
USP28Q96RU2 NPM1P11-201ENST00000417106 855 ntBASIC3.4□□□□□ -1.87
USP28Q96RU2 MTCYBP38-201ENST00000417160 1123 ntBASIC3.4□□□□□ -1.87
USP28Q96RU2 TOP2A-201ENST00000423485 5758 ntAPPRIS P1 TSL 1 (best) BASIC3.4□□□□□ -1.87
USP28Q96RU2 AC019178.2-201ENST00000423595 505 ntBASIC3.4□□□□□ -1.87
USP28Q96RU2 TRIAP1P1-201ENST00000427062 225 ntBASIC3.4□□□□□ -1.87
USP28Q96RU2 MYCBP2-AS2-201ENST00000428716 428 ntTSL 5 BASIC3.4□□□□□ -1.87
USP28Q96RU2 HIGD1AP11-201ENST00000438361 280 ntBASIC3.4□□□□□ -1.87
USP28Q96RU2 AC006028.1-201ENST00000438379 402 ntBASIC3.4□□□□□ -1.87
USP28Q96RU2 AC044784.2-201ENST00000447297 366 ntTSL 3 BASIC3.4□□□□□ -1.87
USP28Q96RU2 RPL39P6-201ENST00000448289 150 ntBASIC3.4□□□□□ -1.87
USP28Q96RU2 RPL23AP35-201ENST00000451906 501 ntBASIC3.4□□□□□ -1.87
USP28Q96RU2 AC080014.1-201ENST00000496877 1201 ntBASIC3.4□□□□□ -1.87
USP28Q96RU2 AC093297.2-207ENST00000505401 692 ntTSL 3 BASIC3.4□□□□□ -1.87
USP28Q96RU2 HTN1-204ENST00000511674 623 ntAPPRIS P1 TSL 2 BASIC3.4□□□□□ -1.87
USP28Q96RU2 AC006499.2-201ENST00000513470 337 ntBASIC3.4□□□□□ -1.87
USP28Q96RU2 AC008885.1-201ENST00000514930 301 ntBASIC3.4□□□□□ -1.87
USP28Q96RU2 DEFB131D-201ENST00000526803 184 ntBASIC3.4□□□□□ -1.87
USP28Q96RU2 OR4A45P-201ENST00000529954 901 ntBASIC3.4□□□□□ -1.87
USP28Q96RU2 AC087311.2-201ENST00000549660 320 ntTSL 4 BASIC3.4□□□□□ -1.87
USP28Q96RU2 LSM6P2-201ENST00000552208 177 ntBASIC3.4□□□□□ -1.87
USP28Q96RU2 AL358335.2-201ENST00000555693 487 ntTSL 3 BASIC3.4□□□□□ -1.87
USP28Q96RU2 LINC01491-202ENST00000558792 439 ntTSL 3 BASIC3.4□□□□□ -1.87
USP28Q96RU2 ROCK1P1-201ENST00000573767 549 ntBASIC3.4□□□□□ -1.87
USP28Q96RU2 RNASEH2B-AS1-202ENST00000593369 648 ntTSL 5 BASIC3.4□□□□□ -1.87
USP28Q96RU2 AC105129.3-201ENST00000605455 485 ntBASIC3.4□□□□□ -1.87
USP28Q96RU2 AC019176.2-201ENST00000611579 315 ntBASIC3.4□□□□□ -1.87
USP28Q96RU2 PROX1-AS1-244ENST00000630355 599 ntTSL 5 BASIC3.4□□□□□ -1.87
USP28Q96RU2 PCMTD1P7-201ENST00000634506 357 ntBASIC3.4□□□□□ -1.87
USP28Q96RU2 SLAIN1-203ENST00000351546 2394 ntTSL 2 BASIC3.4□□□□□ -1.87
USP28Q96RU2 AL390862.1-201ENST00000635467 1469 ntBASIC3.4□□□□□ -1.87
USP28Q96RU2 TRDN-201ENST00000334268 4770 ntAPPRIS P3 TSL 1 (best) BASIC3.4□□□□□ -1.87
USP28Q96RU2 SLC27A2-203ENST00000544960 2025 ntTSL 2 BASIC3.39□□□□□ -1.87
USP28Q96RU2 ARHGAP5-202ENST00000345122 9604 ntAPPRIS P3 TSL 5 BASIC3.39□□□□□ -1.87
USP28Q96RU2 SOCS4-201ENST00000339298 6667 ntAPPRIS P1 TSL 1 (best) BASIC3.39□□□□□ -1.87
USP28Q96RU2 MUC15-205ENST00000529533 2084 ntTSL 1 (best) BASIC3.39□□□□□ -1.87
USP28Q96RU2 LINC01545-201ENST00000377879 521 ntTSL 1 (best) BASIC3.39□□□□□ -1.87
USP28Q96RU2 SNORD116-9-201ENST00000384000 95 ntBASIC3.39□□□□□ -1.87
USP28Q96RU2 SNORD116-3-201ENST00000384287 95 ntBASIC3.39□□□□□ -1.87
USP28Q96RU2 RNU6-339P-201ENST00000384310 107 ntBASIC3.39□□□□□ -1.87
USP28Q96RU2 SNORD116-7-201ENST00000384404 95 ntBASIC3.39□□□□□ -1.87
USP28Q96RU2 SNORD116-5-201ENST00000384462 95 ntBASIC3.39□□□□□ -1.87
USP28Q96RU2 AL031577.2-201ENST00000404133 280 ntBASIC3.39□□□□□ -1.87
USP28Q96RU2 RN7SKP220-201ENST00000410611 288 ntBASIC3.39□□□□□ -1.87
USP28Q96RU2 AC093865.1-201ENST00000415387 433 ntTSL 3 BASIC3.39□□□□□ -1.87
USP28Q96RU2 AL158156.1-201ENST00000422509 473 ntBASIC3.39□□□□□ -1.87
USP28Q96RU2 DUTP6-201ENST00000425573 462 ntBASIC3.39□□□□□ -1.87
Retrieved 100 of 98,524 protein–RNA pairs in 96.2 ms