Protein–RNA interactions for Protein: Q96MW1

CCDC43, Coiled-coil domain-containing protein 43, humanhuman

Known RBP Predictions only

Length 224 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC43Q96MW1 AC006369.2-201ENST00000431712 384 ntTSL 3 BASIC3.36□□□□□ -1.87
CCDC43Q96MW1 LINC01797-202ENST00000433432 765 ntTSL 3 BASIC3.36□□□□□ -1.87
CCDC43Q96MW1 ATP5F1P1-201ENST00000433775 569 ntBASIC3.36□□□□□ -1.87
CCDC43Q96MW1 EXOSC3P1-201ENST00000448649 500 ntBASIC3.36□□□□□ -1.87
CCDC43Q96MW1 RSL24D1P3-201ENST00000449255 495 ntBASIC3.36□□□□□ -1.87
CCDC43Q96MW1 ZNF886P-201ENST00000450781 723 ntBASIC3.36□□□□□ -1.87
CCDC43Q96MW1 AC010099.1-201ENST00000455434 375 ntBASIC3.36□□□□□ -1.87
CCDC43Q96MW1 RPL30P9-201ENST00000465586 330 ntBASIC3.36□□□□□ -1.87
CCDC43Q96MW1 HSPE1P6-201ENST00000479457 291 ntBASIC3.36□□□□□ -1.87
CCDC43Q96MW1 AC010280.1-201ENST00000515199 340 ntTSL 2 BASIC3.36□□□□□ -1.87
CCDC43Q96MW1 RNU6-714P-201ENST00000516963 103 ntBASIC3.36□□□□□ -1.87
CCDC43Q96MW1 AC022360.2-202ENST00000517308 407 ntTSL 3 BASIC3.36□□□□□ -1.87
CCDC43Q96MW1 MAL2-206ENST00000522187 547 ntTSL 4 BASIC3.36□□□□□ -1.87
CCDC43Q96MW1 OR6C7P-201ENST00000547875 934 ntBASIC3.36□□□□□ -1.87
CCDC43Q96MW1 AC107016.2-201ENST00000547968 190 ntBASIC3.36□□□□□ -1.87
CCDC43Q96MW1 ARL1-211ENST00000551828 776 ntTSL 5 BASIC3.36□□□□□ -1.87
CCDC43Q96MW1 AC113146.1-202ENST00000560259 433 ntTSL 5 BASIC3.36□□□□□ -1.87
CCDC43Q96MW1 AC024270.4-201ENST00000570202 421 ntTSL 3 BASIC3.36□□□□□ -1.87
CCDC43Q96MW1 OR4K7P-201ENST00000580232 945 ntBASIC3.36□□□□□ -1.87
CCDC43Q96MW1 AL160281.1-201ENST00000605307 311 ntBASIC3.36□□□□□ -1.87
CCDC43Q96MW1 AC131235.4-201ENST00000609288 620 ntBASIC3.36□□□□□ -1.87
CCDC43Q96MW1 Metazoa_SRP.117-201ENST00000615106 292 ntBASIC3.36□□□□□ -1.87
CCDC43Q96MW1 KCNIP4-IT1-201ENST00000627566 9848 ntBASIC3.35□□□□□ -1.87
CCDC43Q96MW1 ZNF833P-201ENST00000424938 1494 ntBASIC3.35□□□□□ -1.87
CCDC43Q96MW1 DCLRE1A-202ENST00000369305 4241 ntAPPRIS P1 TSL 5 BASIC3.35□□□□□ -1.87
CCDC43Q96MW1 CHD9-202ENST00000398510 11337 ntTSL 1 (best) BASIC3.35□□□□□ -1.87
CCDC43Q96MW1 AC233263.6-201ENST00000631132 1963 ntBASIC3.35□□□□□ -1.87
CCDC43Q96MW1 SYCP2-201ENST00000357552 5567 ntAPPRIS P2 TSL 1 (best) BASIC3.35□□□□□ -1.87
CCDC43Q96MW1 RNU6-525P-201ENST00000363685 104 ntBASIC3.35□□□□□ -1.87
CCDC43Q96MW1 RPL23AP29-201ENST00000397284 453 ntBASIC3.35□□□□□ -1.87
CCDC43Q96MW1 MIR1290-201ENST00000408735 78 ntBASIC3.35□□□□□ -1.87
CCDC43Q96MW1 RN7SKP220-201ENST00000410611 288 ntBASIC3.35□□□□□ -1.87
CCDC43Q96MW1 RNU4-22P-201ENST00000411058 166 ntBASIC3.35□□□□□ -1.87
CCDC43Q96MW1 VN1R51P-201ENST00000411675 945 ntBASIC3.35□□□□□ -1.87
CCDC43Q96MW1 AL359195.1-201ENST00000416657 339 ntTSL 3 BASIC3.35□□□□□ -1.87
CCDC43Q96MW1 BX119904.4-201ENST00000424402 301 ntBASIC3.35□□□□□ -1.87
CCDC43Q96MW1 RPL35AP12-201ENST00000425362 338 ntBASIC3.35□□□□□ -1.87
CCDC43Q96MW1 UBE2E2-AS1-202ENST00000430018 499 ntTSL 2 BASIC3.35□□□□□ -1.87
CCDC43Q96MW1 AL355340.1-201ENST00000433085 344 ntTSL 3 BASIC3.35□□□□□ -1.87
CCDC43Q96MW1 LSM1P1-201ENST00000438629 273 ntBASIC3.35□□□□□ -1.87
CCDC43Q96MW1 MTND5P14-201ENST00000441481 1267 ntBASIC3.35□□□□□ -1.87
CCDC43Q96MW1 OR10R1P-201ENST00000441524 1141 ntBASIC3.35□□□□□ -1.87
CCDC43Q96MW1 AC095032.1-201ENST00000444810 527 ntTSL 3 BASIC3.35□□□□□ -1.87
CCDC43Q96MW1 AL390961.1-201ENST00000446557 319 ntTSL 2 BASIC3.35□□□□□ -1.87
CCDC43Q96MW1 AL583803.1-201ENST00000454262 334 ntTSL 3 BASIC3.35□□□□□ -1.87
CCDC43Q96MW1 MTND1P16-201ENST00000465177 898 ntBASIC3.35□□□□□ -1.87
CCDC43Q96MW1 RN7SL20P-201ENST00000488827 297 ntBASIC3.35□□□□□ -1.87
CCDC43Q96MW1 AL049874.1-201ENST00000489560 388 ntBASIC3.35□□□□□ -1.87
CCDC43Q96MW1 MTND3P3-201ENST00000505004 126 ntBASIC3.35□□□□□ -1.87
CCDC43Q96MW1 GMPSP1-201ENST00000514075 579 ntBASIC3.35□□□□□ -1.87
CCDC43Q96MW1 AC106744.2-202ENST00000515123 448 ntTSL 3 BASIC3.35□□□□□ -1.87
CCDC43Q96MW1 PKIA-203ENST00000518467 588 ntAPPRIS P1 TSL 1 (best) BASIC3.35□□□□□ -1.87
CCDC43Q96MW1 AC007619.1-201ENST00000544086 412 ntTSL 5 BASIC3.35□□□□□ -1.87
CCDC43Q96MW1 MAPK1-204ENST00000544786 951 ntTSL 1 (best) BASIC3.35□□□□□ -1.87
CCDC43Q96MW1 AC069228.1-202ENST00000550272 737 ntTSL 3 BASIC3.35□□□□□ -1.87
CCDC43Q96MW1 CYCSP2-201ENST00000558168 301 ntBASIC3.35□□□□□ -1.87
CCDC43Q96MW1 AC025917.1-201ENST00000562062 612 ntTSL 3 BASIC3.35□□□□□ -1.87
CCDC43Q96MW1 AC118755.1-201ENST00000572923 195 ntTSL 3 BASIC3.35□□□□□ -1.87
CCDC43Q96MW1 AC127024.3-201ENST00000582841 460 ntTSL 3 BASIC3.35□□□□□ -1.87
CCDC43Q96MW1 AC005000.2-201ENST00000605468 310 ntBASIC3.35□□□□□ -1.87
CCDC43Q96MW1 AC090132.2-201ENST00000615881 347 ntBASIC3.35□□□□□ -1.87
CCDC43Q96MW1 MIR6130-201ENST00000619419 109 ntBASIC3.35□□□□□ -1.87
CCDC43Q96MW1 AC012409.2-201ENST00000619812 751 ntTSL 5 BASIC3.35□□□□□ -1.87
CCDC43Q96MW1 AC116618.1-201ENST00000634617 774 ntBASIC3.35□□□□□ -1.87
CCDC43Q96MW1 AL445984.1-201ENST00000637834 659 ntBASIC3.35□□□□□ -1.87
CCDC43Q96MW1 LMNTD1-204ENST00000458174 1677 ntAPPRIS ALT2 TSL 2 BASIC3.35□□□□□ -1.87
CCDC43Q96MW1 AL136537.2-201ENST00000562049 2471 ntTSL 1 (best) BASIC3.35□□□□□ -1.87
CCDC43Q96MW1 ANKRD26P2-201ENST00000445530 1710 ntBASIC3.35□□□□□ -1.87
CCDC43Q96MW1 VSTM2A-OT1-201ENST00000456049 3031 ntTSL 1 (best) BASIC3.35□□□□□ -1.87
CCDC43Q96MW1 MIR133A1HG-202ENST00000581072 4226 ntTSL 1 (best) BASIC3.34□□□□□ -1.87
CCDC43Q96MW1 ADGRG7-202ENST00000475887 2035 ntTSL 2 BASIC3.34□□□□□ -1.87
CCDC43Q96MW1 FTX-214ENST00000638437 12267 ntTSL 5 BASIC3.34□□□□□ -1.87
CCDC43Q96MW1 TMPRSS11A-202ENST00000508048 3247 ntAPPRIS ALT2 TSL 1 (best) BASIC3.34□□□□□ -1.87
CCDC43Q96MW1 Y_RNA.311-201ENST00000365068 96 ntBASIC3.34□□□□□ -1.87
CCDC43Q96MW1 SNORD116.1-201ENST00000365628 92 ntBASIC3.34□□□□□ -1.87
CCDC43Q96MW1 RNU6-1027P-201ENST00000383998 107 ntBASIC3.34□□□□□ -1.87
CCDC43Q96MW1 SNORA54-201ENST00000384281 123 ntBASIC3.34□□□□□ -1.87
CCDC43Q96MW1 TRAV8-1-201ENST00000390430 473 ntAPPRIS P1 BASIC3.34□□□□□ -1.87
CCDC43Q96MW1 TRAJ32-201ENST00000390505 66 ntAPPRIS P1 BASIC3.34□□□□□ -1.87
CCDC43Q96MW1 SNORA48.2-201ENST00000390926 124 ntBASIC3.34□□□□□ -1.87
CCDC43Q96MW1 AC096664.2-201ENST00000411843 406 ntBASIC3.34□□□□□ -1.87
CCDC43Q96MW1 AC018630.2-202ENST00000422992 927 ntBASIC3.34□□□□□ -1.87
CCDC43Q96MW1 AC234781.2-201ENST00000426370 994 ntBASIC3.34□□□□□ -1.87
CCDC43Q96MW1 AL139118.1-201ENST00000432707 446 ntTSL 3 BASIC3.34□□□□□ -1.87
CCDC43Q96MW1 ZNF736P4Y-201ENST00000454995 1243 ntBASIC3.34□□□□□ -1.87
CCDC43Q96MW1 MTND2P39-201ENST00000457230 764 ntBASIC3.34□□□□□ -1.87
CCDC43Q96MW1 LINC01546-201ENST00000457435 674 ntTSL 2 BASIC3.34□□□□□ -1.87
CCDC43Q96MW1 AC005410.1-202ENST00000460347 485 ntBASIC3.34□□□□□ -1.87
CCDC43Q96MW1 SETP11-201ENST00000473027 690 ntBASIC3.34□□□□□ -1.87
CCDC43Q96MW1 RPS29P2-201ENST00000479278 136 ntBASIC3.34□□□□□ -1.87
CCDC43Q96MW1 RPL30P5-201ENST00000494923 336 ntBASIC3.34□□□□□ -1.87
CCDC43Q96MW1 PTPRG-AS1-210ENST00000498655 547 ntTSL 4 BASIC3.34□□□□□ -1.87
CCDC43Q96MW1 LINC02110-201ENST00000503870 546 ntTSL 3 BASIC3.34□□□□□ -1.87
CCDC43Q96MW1 LINC02496-201ENST00000509559 584 ntTSL 3 BASIC3.34□□□□□ -1.87
CCDC43Q96MW1 AC079395.1-201ENST00000510981 262 ntBASIC3.34□□□□□ -1.87
CCDC43Q96MW1 AC113385.1-201ENST00000511468 563 ntTSL 4 BASIC3.34□□□□□ -1.87
CCDC43Q96MW1 LINC02484-201ENST00000513843 546 ntTSL 5 BASIC3.34□□□□□ -1.87
CCDC43Q96MW1 AC026801.2-201ENST00000515352 425 ntBASIC3.34□□□□□ -1.87
CCDC43Q96MW1 ELOC-204ENST00000519487 814 ntAPPRIS P1 TSL 2 BASIC3.34□□□□□ -1.87
CCDC43Q96MW1 OR7K1P-201ENST00000546439 926 ntBASIC3.34□□□□□ -1.87
Retrieved 100 of 98,524 protein–RNA pairs in 107.5 ms