Protein–RNA interactions for Protein: P43489

TNFRSF4, Tumor necrosis factor receptor superfamily member 4, humanhuman

Predictions only

Length 277 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TNFRSF4P43489 AC007496.3-201ENST00000624987 3443 ntBASIC3.13□□□□□ -1.91
TNFRSF4P43489 AF228730.1-201ENST00000397972 663 ntBASIC3.13□□□□□ -1.91
TNFRSF4P43489 AL138962.1-201ENST00000417987 411 ntTSL 5 BASIC3.13□□□□□ -1.91
TNFRSF4P43489 AC006960.1-201ENST00000419980 153 ntBASIC3.13□□□□□ -1.91
TNFRSF4P43489 AL159169.1-201ENST00000421119 127 ntBASIC3.13□□□□□ -1.91
TNFRSF4P43489 NBDY-202ENST00000423617 543 ntAPPRIS P1 TSL 2 BASIC3.13□□□□□ -1.91
TNFRSF4P43489 UBE2D3P2-201ENST00000424409 445 ntBASIC3.13□□□□□ -1.91
TNFRSF4P43489 NAALADL2-AS2-201ENST00000424690 1038 ntTSL 5 BASIC3.13□□□□□ -1.91
TNFRSF4P43489 AL022396.1-201ENST00000427011 386 ntTSL 3 BASIC3.13□□□□□ -1.91
TNFRSF4P43489 AC004160.1-205ENST00000428967 577 ntTSL 4 BASIC3.13□□□□□ -1.91
TNFRSF4P43489 AC024082.2-201ENST00000434771 238 ntBASIC3.13□□□□□ -1.91
TNFRSF4P43489 SNRPEP4-201ENST00000435815 279 ntBASIC3.13□□□□□ -1.91
TNFRSF4P43489 MTND5P14-201ENST00000441481 1267 ntBASIC3.13□□□□□ -1.91
TNFRSF4P43489 AC012070.1-201ENST00000442062 427 ntTSL 3 BASIC3.13□□□□□ -1.91
TNFRSF4P43489 AC009299.3-202ENST00000445372 538 ntTSL 3 BASIC3.13□□□□□ -1.91
TNFRSF4P43489 OR6K5P-201ENST00000447050 945 ntBASIC3.13□□□□□ -1.91
TNFRSF4P43489 AL512658.1-201ENST00000449072 533 ntTSL 3 BASIC3.13□□□□□ -1.91
TNFRSF4P43489 ANKRD26P4-201ENST00000455755 950 ntBASIC3.13□□□□□ -1.91
TNFRSF4P43489 AC104563.1-201ENST00000476147 376 ntBASIC3.13□□□□□ -1.91
TNFRSF4P43489 AC068587.2-201ENST00000478386 781 ntBASIC3.13□□□□□ -1.91
TNFRSF4P43489 LINC01846-201ENST00000505908 651 ntTSL 5 BASIC3.13□□□□□ -1.91
TNFRSF4P43489 AC093281.2-201ENST00000510153 597 ntBASIC3.13□□□□□ -1.91
TNFRSF4P43489 AC092673.1-201ENST00000510203 428 ntTSL 3 BASIC3.13□□□□□ -1.91
TNFRSF4P43489 AC022483.1-201ENST00000514020 567 ntBASIC3.13□□□□□ -1.91
TNFRSF4P43489 AC025524.2-207ENST00000520097 506 ntTSL 3 BASIC3.13□□□□□ -1.91
TNFRSF4P43489 AP001205.1-201ENST00000521625 449 ntTSL 3 BASIC3.13□□□□□ -1.91
TNFRSF4P43489 ERHP1-201ENST00000523006 310 ntBASIC3.13□□□□□ -1.91
TNFRSF4P43489 CCDC179-202ENST00000532798 791 ntAPPRIS P1 TSL 2 BASIC3.13□□□□□ -1.91
TNFRSF4P43489 AC092745.2-201ENST00000537764 620 ntTSL 3 BASIC3.13□□□□□ -1.91
TNFRSF4P43489 LINC00944-203ENST00000542248 548 ntTSL 4 BASIC3.13□□□□□ -1.91
TNFRSF4P43489 LINC02311-201ENST00000556144 383 ntTSL 3 BASIC3.13□□□□□ -1.91
TNFRSF4P43489 AC024270.4-201ENST00000570202 421 ntTSL 3 BASIC3.13□□□□□ -1.91
TNFRSF4P43489 MIR4298-201ENST00000584380 73 ntBASIC3.13□□□□□ -1.91
TNFRSF4P43489 AC008739.1-201ENST00000598137 575 ntTSL 2 BASIC3.13□□□□□ -1.91
TNFRSF4P43489 VN1R82P-201ENST00000601481 356 ntBASIC3.13□□□□□ -1.91
TNFRSF4P43489 AL592221.1-201ENST00000605266 382 ntBASIC3.13□□□□□ -1.91
TNFRSF4P43489 Z99289.3-201ENST00000605586 594 ntBASIC3.13□□□□□ -1.91
TNFRSF4P43489 AC068831.7-201ENST00000616954 363 ntBASIC3.13□□□□□ -1.91
TNFRSF4P43489 AP000484.1-201ENST00000620067 1252 ntBASIC3.13□□□□□ -1.91
TNFRSF4P43489 AC073476.4-201ENST00000628409 72 ntBASIC3.13□□□□□ -1.91
TNFRSF4P43489 ZNF883-201ENST00000619044 2051 ntAPPRIS P1 TSL 5 BASIC3.13□□□□□ -1.91
TNFRSF4P43489 ZNF804B-202ENST00000611114 3968 ntTSL 5 BASIC3.12□□□□□ -1.91
TNFRSF4P43489 HDX-201ENST00000297977 6200 ntAPPRIS P1 TSL 1 (best) BASIC3.12□□□□□ -1.91
TNFRSF4P43489 AC025164.2-202ENST00000499685 5699 ntTSL 3 BASIC3.12□□□□□ -1.91
TNFRSF4P43489 AC009812.4-201ENST00000569134 1805 ntBASIC3.12□□□□□ -1.91
TNFRSF4P43489 AC090740.1-201ENST00000623193 2262 ntBASIC3.12□□□□□ -1.91
TNFRSF4P43489 SNORA5B-201ENST00000363786 132 ntBASIC3.12□□□□□ -1.91
TNFRSF4P43489 RNU6-343P-201ENST00000364709 104 ntBASIC3.12□□□□□ -1.91
TNFRSF4P43489 RNU6-55P-201ENST00000411092 107 ntBASIC3.12□□□□□ -1.91
TNFRSF4P43489 RNU6-954P-201ENST00000411355 107 ntBASIC3.12□□□□□ -1.91
TNFRSF4P43489 EEF1A1P41-201ENST00000414667 207 ntBASIC3.12□□□□□ -1.91
TNFRSF4P43489 GRM7-AS3-202ENST00000417482 454 ntTSL 3 BASIC3.12□□□□□ -1.91
TNFRSF4P43489 AL139118.1-201ENST00000432707 446 ntTSL 3 BASIC3.12□□□□□ -1.91
TNFRSF4P43489 THAP5P1-201ENST00000439089 262 ntBASIC3.12□□□□□ -1.91
TNFRSF4P43489 AC003001.1-201ENST00000443247 1135 ntTSL 5 BASIC3.12□□□□□ -1.91
TNFRSF4P43489 AC010975.1-201ENST00000443301 669 ntTSL 3 BASIC3.12□□□□□ -1.91
TNFRSF4P43489 RPL17P49-201ENST00000443728 411 ntBASIC3.12□□□□□ -1.91
TNFRSF4P43489 TEX41-209ENST00000451478 452 ntTSL 2 BASIC3.12□□□□□ -1.91
TNFRSF4P43489 LINC02198-201ENST00000504280 810 ntTSL 3 BASIC3.12□□□□□ -1.91
TNFRSF4P43489 LINC02447-203ENST00000504402 292 ntTSL 3 BASIC3.12□□□□□ -1.91
TNFRSF4P43489 AC093297.1-201ENST00000511712 591 ntTSL 4 BASIC3.12□□□□□ -1.91
TNFRSF4P43489 AC024589.1-201ENST00000512207 263 ntBASIC3.12□□□□□ -1.91
TNFRSF4P43489 LINC02484-202ENST00000514877 546 ntTSL 3 BASIC3.12□□□□□ -1.91
TNFRSF4P43489 RNU6-528P-201ENST00000516926 100 ntBASIC3.12□□□□□ -1.91
TNFRSF4P43489 RNU6-714P-201ENST00000516963 103 ntBASIC3.12□□□□□ -1.91
TNFRSF4P43489 RNU4ATAC17P-201ENST00000517272 120 ntBASIC3.12□□□□□ -1.91
TNFRSF4P43489 AC022690.1-201ENST00000526681 550 ntBASIC3.12□□□□□ -1.91
TNFRSF4P43489 AP000756.1-201ENST00000532606 679 ntTSL 2 BASIC3.12□□□□□ -1.91
TNFRSF4P43489 AC022509.2-201ENST00000540392 699 ntTSL 3 BASIC3.12□□□□□ -1.91
TNFRSF4P43489 LYZ-203ENST00000549690 669 ntTSL 2 BASIC3.12□□□□□ -1.91
TNFRSF4P43489 AC092718.6-202ENST00000563072 408 ntTSL 2 BASIC3.12□□□□□ -1.91
TNFRSF4P43489 AC055876.1-202ENST00000567053 138 ntBASIC3.12□□□□□ -1.91
TNFRSF4P43489 AL354943.1-201ENST00000572103 781 ntBASIC3.12□□□□□ -1.91
TNFRSF4P43489 AC044873.1-201ENST00000580487 399 ntTSL 3 BASIC3.12□□□□□ -1.91
TNFRSF4P43489 AL353997.4-201ENST00000586196 166 ntBASIC3.12□□□□□ -1.91
TNFRSF4P43489 AC006116.8-203ENST00000587448 465 ntTSL 3 BASIC3.12□□□□□ -1.91
TNFRSF4P43489 NIFKP6-201ENST00000598115 845 ntBASIC3.12□□□□□ -1.91
TNFRSF4P43489 AC008962.1-201ENST00000605729 304 ntBASIC3.12□□□□□ -1.91
TNFRSF4P43489 AC002076.2-201ENST00000617362 122 ntBASIC3.12□□□□□ -1.91
TNFRSF4P43489 AC079228.1-201ENST00000624774 1049 ntBASIC3.12□□□□□ -1.91
TNFRSF4P43489 AC068631.1-219ENST00000625826 668 ntTSL 5 BASIC3.12□□□□□ -1.91
TNFRSF4P43489 DLD-214ENST00000639772 421 ntTSL 5 BASIC3.12□□□□□ -1.91
TNFRSF4P43489 UBE2W-203ENST00000517608 8426 ntTSL 1 (best) BASIC3.12□□□□□ -1.91
TNFRSF4P43489 SEC31A-215ENST00000505472 4159 ntTSL 5 BASIC3.12□□□□□ -1.91
TNFRSF4P43489 NEB-218ENST00000603639 25578 ntAPPRIS ALT2 TSL 5 BASIC3.12□□□□□ -1.91
TNFRSF4P43489 NEB-219ENST00000604864 25578 ntAPPRIS ALT2 TSL 5 BASIC3.12□□□□□ -1.91
TNFRSF4P43489 WDFY3-AS2-202ENST00000451762 5814 ntTSL 3 BASIC3.11□□□□□ -1.91
TNFRSF4P43489 AGTR1-208ENST00000475347 1669 ntAPPRIS P1 TSL 3 BASIC3.11□□□□□ -1.91
TNFRSF4P43489 LINC01376-202ENST00000424895 1949 ntTSL 2 BASIC3.11□□□□□ -1.91
TNFRSF4P43489 MUC7-203ENST00000456088 2479 ntAPPRIS P2 TSL 4 BASIC3.11□□□□□ -1.91
TNFRSF4P43489 OXR1-205ENST00000442977 2956 ntTSL 2 BASIC3.11□□□□□ -1.91
TNFRSF4P43489 RNU6-97P-201ENST00000363387 104 ntBASIC3.11□□□□□ -1.91
TNFRSF4P43489 RNU6-1214P-201ENST00000363650 109 ntBASIC3.11□□□□□ -1.91
TNFRSF4P43489 TRAV8-1-201ENST00000390430 473 ntAPPRIS P1 BASIC3.11□□□□□ -1.91
TNFRSF4P43489 SNORD67-201ENST00000390833 111 ntBASIC3.11□□□□□ -1.91
TNFRSF4P43489 AC110754.1-201ENST00000399740 601 ntBASIC3.11□□□□□ -1.91
TNFRSF4P43489 RNU6-757P-201ENST00000410334 100 ntBASIC3.11□□□□□ -1.91
TNFRSF4P43489 HMGB3P23-201ENST00000414981 585 ntBASIC3.11□□□□□ -1.91
TNFRSF4P43489 AP000550.2-201ENST00000417463 774 ntTSL 5 BASIC3.11□□□□□ -1.91
TNFRSF4P43489 RPL27AP8-201ENST00000424277 446 ntBASIC3.11□□□□□ -1.91
Retrieved 100 of 98,524 protein–RNA pairs in 158.4 ms