Protein–RNA interactions for Protein: P28370

SMARCA1, Probable global transcription activator SNF2L1, humanhuman

Predictions only

Length 1,054 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA1P28370 AC090985.1-201ENST00000554440 480 ntTSL 2 BASIC4.45□□□□□ -1.7
SMARCA1P28370 AC090877.1-201ENST00000561418 344 ntBASIC4.45□□□□□ -1.7
SMARCA1P28370 AC126407.1-201ENST00000563044 566 ntTSL 4 BASIC4.45□□□□□ -1.7
SMARCA1P28370 AC092325.1-201ENST00000566449 554 ntBASIC4.45□□□□□ -1.7
SMARCA1P28370 DLGAP1-AS4-201ENST00000582054 757 ntTSL 5 BASIC4.45□□□□□ -1.7
SMARCA1P28370 AC010928.3-201ENST00000587712 541 ntBASIC4.45□□□□□ -1.7
SMARCA1P28370 PPP3CB-AS1-206ENST00000595935 675 ntTSL 5 BASIC4.45□□□□□ -1.7
SMARCA1P28370 STARD13-AS-239ENST00000609588 982 ntTSL 5 BASIC4.45□□□□□ -1.7
SMARCA1P28370 AL133173.2-201ENST00000614270 90 ntBASIC4.45□□□□□ -1.7
SMARCA1P28370 AL359880.1-201ENST00000621879 266 ntBASIC4.45□□□□□ -1.7
SMARCA1P28370 AC091905.1-201ENST00000624400 311 ntBASIC4.45□□□□□ -1.7
SMARCA1P28370 AC092017.3-201ENST00000638880 536 ntAPPRIS P1 TSL 5 BASIC4.45□□□□□ -1.7
SMARCA1P28370 ISPD-AS1-202ENST00000438573 2252 ntTSL 1 (best) BASIC4.45□□□□□ -1.7
SMARCA1P28370 BDP1P-201ENST00000582658 1990 ntBASIC4.45□□□□□ -1.7
SMARCA1P28370 CCSER1-201ENST00000432775 3927 ntTSL 1 (best) BASIC4.45□□□□□ -1.7
SMARCA1P28370 ZBTB26-202ENST00000373656 4443 ntAPPRIS P1 TSL 1 (best) BASIC4.45□□□□□ -1.7
SMARCA1P28370 ADAM5-201ENST00000359790 1663 ntTSL 1 (best) BASIC4.45□□□□□ -1.7
SMARCA1P28370 USH2A-201ENST00000307340 18883 ntAPPRIS P1 TSL 1 (best) BASIC4.44□□□□□ -1.7
SMARCA1P28370 UTRN-204ENST00000367545 12339 ntAPPRIS P1 TSL 5 BASIC4.44□□□□□ -1.7
SMARCA1P28370 UBE3A-202ENST00000397954 2873 ntTSL 5 BASIC4.44□□□□□ -1.7
SMARCA1P28370 AC027287.1-201ENST00000553115 1453 ntBASIC4.44□□□□□ -1.7
SMARCA1P28370 POLR2B-201ENST00000314595 3748 ntAPPRIS P1 TSL 1 (best) BASIC4.44□□□□□ -1.7
SMARCA1P28370 MUC7-201ENST00000304887 2443 ntAPPRIS P2 TSL 1 (best) BASIC4.44□□□□□ -1.7
SMARCA1P28370 BAZ2B-204ENST00000392783 8289 ntAPPRIS P1 TSL 5 BASIC4.44□□□□□ -1.7
SMARCA1P28370 RRAS2-202ENST00000414023 1884 ntTSL 2 BASIC4.44□□□□□ -1.7
SMARCA1P28370 RTTN-201ENST00000255674 6960 ntTSL 5 BASIC4.44□□□□□ -1.7
SMARCA1P28370 RNY4P16-201ENST00000364768 94 ntBASIC4.44□□□□□ -1.7
SMARCA1P28370 RNU6-1103P-201ENST00000384150 107 ntBASIC4.44□□□□□ -1.7
SMARCA1P28370 MIR30B-201ENST00000384850 88 ntBASIC4.44□□□□□ -1.7
SMARCA1P28370 RNU2-47P-201ENST00000410649 186 ntBASIC4.44□□□□□ -1.7
SMARCA1P28370 RNU4-55P-201ENST00000410731 137 ntBASIC4.44□□□□□ -1.7
SMARCA1P28370 LINC01048-201ENST00000414480 511 ntTSL 2 BASIC4.44□□□□□ -1.7
SMARCA1P28370 AC092447.6-201ENST00000414578 210 ntBASIC4.44□□□□□ -1.7
SMARCA1P28370 FAM230B-202ENST00000415704 396 ntTSL 3 BASIC4.44□□□□□ -1.7
SMARCA1P28370 EI24P1-201ENST00000416584 867 ntBASIC4.44□□□□□ -1.7
SMARCA1P28370 AL589765.2-201ENST00000420382 424 ntTSL 3 BASIC4.44□□□□□ -1.7
SMARCA1P28370 AL445123.1-201ENST00000422023 446 ntTSL 2 BASIC4.44□□□□□ -1.7
SMARCA1P28370 MTND4LP11-201ENST00000422184 280 ntBASIC4.44□□□□□ -1.7
SMARCA1P28370 AL157884.2-201ENST00000424177 551 ntTSL 3 BASIC4.44□□□□□ -1.7
SMARCA1P28370 PCDH9-AS1-201ENST00000430861 532 ntTSL 2 BASIC4.44□□□□□ -1.7
SMARCA1P28370 MTCO2P11-201ENST00000431069 680 ntBASIC4.44□□□□□ -1.7
SMARCA1P28370 CLEC4E-202ENST00000446457 701 ntTSL 3 BASIC4.44□□□□□ -1.7
SMARCA1P28370 AL359073.1-201ENST00000448036 403 ntBASIC4.44□□□□□ -1.7
SMARCA1P28370 AC084198.1-201ENST00000477747 402 ntBASIC4.44□□□□□ -1.7
SMARCA1P28370 RPS26P15-201ENST00000488067 348 ntBASIC4.44□□□□□ -1.7
SMARCA1P28370 THAP6-203ENST00000502620 582 ntTSL 3 BASIC4.44□□□□□ -1.7
SMARCA1P28370 AC139783.2-201ENST00000504847 1145 ntBASIC4.44□□□□□ -1.7
SMARCA1P28370 AC093689.1-201ENST00000514737 246 ntTSL 5 BASIC4.44□□□□□ -1.7
SMARCA1P28370 RNU6-1178P-201ENST00000516674 107 ntBASIC4.44□□□□□ -1.7
SMARCA1P28370 RNU6-352P-201ENST00000516908 107 ntBASIC4.44□□□□□ -1.7
SMARCA1P28370 AC103798.1-201ENST00000532562 376 ntTSL 2 BASIC4.44□□□□□ -1.7
SMARCA1P28370 AC107016.1-201ENST00000550463 337 ntBASIC4.44□□□□□ -1.7
SMARCA1P28370 LINC02286-201ENST00000552425 285 ntTSL 2 BASIC4.44□□□□□ -1.7
SMARCA1P28370 AC008741.1-201ENST00000569456 510 ntTSL 3 BASIC4.44□□□□□ -1.7
SMARCA1P28370 AC099489.2-201ENST00000574976 260 ntBASIC4.44□□□□□ -1.7
SMARCA1P28370 MIR3167-201ENST00000579623 85 ntBASIC4.44□□□□□ -1.7
SMARCA1P28370 MIR3146-201ENST00000580367 79 ntBASIC4.44□□□□□ -1.7
SMARCA1P28370 AC113137.1-201ENST00000591869 558 ntTSL 4 BASIC4.44□□□□□ -1.7
SMARCA1P28370 AC097467.3-204ENST00000595229 827 ntTSL 5 BASIC4.44□□□□□ -1.7
SMARCA1P28370 AC068790.3-201ENST00000602988 553 ntBASIC4.44□□□□□ -1.7
SMARCA1P28370 CEP164P1-207ENST00000608660 504 ntTSL 5 BASIC4.44□□□□□ -1.7
SMARCA1P28370 AL161734.1-201ENST00000609720 557 ntBASIC4.44□□□□□ -1.7
SMARCA1P28370 AC007014.2-201ENST00000615581 479 ntBASIC4.44□□□□□ -1.7
SMARCA1P28370 AC002550.2-201ENST00000621246 394 ntBASIC4.44□□□□□ -1.7
SMARCA1P28370 DAZ4-206ENST00000449750 3271 ntTSL 5 BASIC4.44□□□□□ -1.7
SMARCA1P28370 LINC02471-203ENST00000641941 4752 ntBASIC4.44□□□□□ -1.7
SMARCA1P28370 MAPK10-253ENST00000641010 4072 ntBASIC4.44□□□□□ -1.7
SMARCA1P28370 OTUD4P1-201ENST00000237841 3067 ntBASIC4.44□□□□□ -1.7
SMARCA1P28370 UBA6-201ENST00000322244 9564 ntAPPRIS P1 TSL 1 (best) BASIC4.44□□□□□ -1.7
SMARCA1P28370 ZNF682-207ENST00000595736 1710 ntTSL 2 BASIC4.43□□□□□ -1.7
SMARCA1P28370 SELENOI-201ENST00000260585 8101 ntAPPRIS P2 TSL 1 (best) BASIC4.43□□□□□ -1.7
SMARCA1P28370 BRCA2-201ENST00000380152 11986 ntAPPRIS P1 TSL 5 BASIC4.43□□□□□ -1.7
SMARCA1P28370 OR6P1-202ENST00000641540 3255 ntAPPRIS P1 BASIC4.43□□□□□ -1.7
SMARCA1P28370 WDR49-207ENST00000479765 2108 ntTSL 2 BASIC4.43□□□□□ -1.7
SMARCA1P28370 DNAH8-202ENST00000359357 13864 ntAPPRIS ALT2 TSL 2 BASIC4.43□□□□□ -1.7
SMARCA1P28370 DEFB114-201ENST00000322066 253 ntAPPRIS P1 TSL 1 (best) BASIC4.43□□□□□ -1.7
SMARCA1P28370 LINC00305-201ENST00000323355 873 ntTSL 1 (best) BASIC4.43□□□□□ -1.7
SMARCA1P28370 RNU6-181P-201ENST00000363225 107 ntBASIC4.43□□□□□ -1.7
SMARCA1P28370 RNU4-12P-201ENST00000365233 139 ntBASIC4.43□□□□□ -1.7
SMARCA1P28370 RNA5SP167-201ENST00000365461 116 ntBASIC4.43□□□□□ -1.7
SMARCA1P28370 RNU6-780P-201ENST00000391030 104 ntBASIC4.43□□□□□ -1.7
SMARCA1P28370 HLFP1-201ENST00000402375 499 ntBASIC4.43□□□□□ -1.7
SMARCA1P28370 RNU2-8P-201ENST00000410727 190 ntBASIC4.43□□□□□ -1.7
SMARCA1P28370 AC114763.2-201ENST00000412593 826 ntTSL 2 BASIC4.43□□□□□ -1.7
SMARCA1P28370 AMD1P2-201ENST00000412936 992 ntBASIC4.43□□□□□ -1.7
SMARCA1P28370 NAP1L1P2-201ENST00000414182 1089 ntBASIC4.43□□□□□ -1.7
SMARCA1P28370 AL136369.2-201ENST00000420825 537 ntTSL 3 BASIC4.43□□□□□ -1.7
SMARCA1P28370 LINC01204-201ENST00000422047 639 ntTSL 3 BASIC4.43□□□□□ -1.7
SMARCA1P28370 AL157786.1-206ENST00000424422 551 ntTSL 3 BASIC4.43□□□□□ -1.7
SMARCA1P28370 AC087650.1-201ENST00000431445 468 ntBASIC4.43□□□□□ -1.7
SMARCA1P28370 AC078845.1-202ENST00000435996 733 ntTSL 3 BASIC4.43□□□□□ -1.7
SMARCA1P28370 FTH1P1-201ENST00000437933 532 ntBASIC4.43□□□□□ -1.7
SMARCA1P28370 RPS29P7-201ENST00000439662 171 ntBASIC4.43□□□□□ -1.7
SMARCA1P28370 AC132479.1-201ENST00000449160 144 ntBASIC4.43□□□□□ -1.7
SMARCA1P28370 AL442647.1-201ENST00000449485 481 ntTSL 5 BASIC4.43□□□□□ -1.7
SMARCA1P28370 NANOGP10-201ENST00000453325 895 ntBASIC4.43□□□□□ -1.7
SMARCA1P28370 AC117386.2-202ENST00000472821 522 ntTSL 3 BASIC4.43□□□□□ -1.7
SMARCA1P28370 RPL23AP41-201ENST00000484754 458 ntBASIC4.43□□□□□ -1.7
SMARCA1P28370 TNFAIP8-205ENST00000504642 711 ntTSL 3 BASIC4.43□□□□□ -1.7
SMARCA1P28370 ARL4AP2-201ENST00000507378 601 ntBASIC4.43□□□□□ -1.7
Retrieved 100 of 98,524 protein–RNA pairs in 164 ms