Protein–RNA interactions for Protein: P22223

CDH3, Cadherin-3, humanhuman

Predictions only

Length 829 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDH3P22223 AL021407.1-201ENST00000404531 386 ntBASIC3.39□□□□□ -1.87
CDH3P22223 RNA5SP44-201ENST00000410446 133 ntBASIC3.39□□□□□ -1.87
CDH3P22223 RNU6-712P-201ENST00000410558 100 ntBASIC3.39□□□□□ -1.87
CDH3P22223 TPMTP3-201ENST00000411928 735 ntBASIC3.39□□□□□ -1.87
CDH3P22223 AC126124.2-201ENST00000413542 321 ntBASIC3.39□□□□□ -1.87
CDH3P22223 HMGB1P11-201ENST00000413899 637 ntBASIC3.39□□□□□ -1.87
CDH3P22223 RPL7P46-201ENST00000425129 740 ntBASIC3.39□□□□□ -1.87
CDH3P22223 AL355303.1-201ENST00000428920 680 ntTSL 3 BASIC3.39□□□□□ -1.87
CDH3P22223 AL512649.1-201ENST00000428997 581 ntBASIC3.39□□□□□ -1.87
CDH3P22223 FTH1P1-201ENST00000437933 532 ntBASIC3.39□□□□□ -1.87
CDH3P22223 AP000542.1-201ENST00000448473 371 ntBASIC3.39□□□□□ -1.87
CDH3P22223 AL390730.1-201ENST00000457106 692 ntTSL 2 BASIC3.39□□□□□ -1.87
CDH3P22223 TIPARP-AS1-201ENST00000463449 735 ntTSL 3 BASIC3.39□□□□□ -1.87
CDH3P22223 RPL21P10-201ENST00000463521 490 ntBASIC3.39□□□□□ -1.87
CDH3P22223 AC091153.1-201ENST00000466297 402 ntBASIC3.39□□□□□ -1.87
CDH3P22223 LINC02496-201ENST00000509559 584 ntTSL 3 BASIC3.39□□□□□ -1.87
CDH3P22223 MTND5P4-201ENST00000514978 288 ntBASIC3.39□□□□□ -1.87
CDH3P22223 AC026991.1-201ENST00000520815 463 ntTSL 3 BASIC3.39□□□□□ -1.87
CDH3P22223 AC013828.2-201ENST00000532487 235 ntBASIC3.39□□□□□ -1.87
CDH3P22223 LINC02460-201ENST00000543558 536 ntTSL 4 BASIC3.39□□□□□ -1.87
CDH3P22223 LINC00640-203ENST00000556479 576 ntTSL 2 BASIC3.39□□□□□ -1.87
CDH3P22223 PWRN1-202ENST00000562501 642 ntTSL 3 BASIC3.39□□□□□ -1.87
CDH3P22223 SMG1P7-203ENST00000573141 619 ntTSL 2 BASIC3.39□□□□□ -1.87
CDH3P22223 FOPNL-204ENST00000573396 735 ntTSL 3 BASIC3.39□□□□□ -1.87
CDH3P22223 ROCK1P1-201ENST00000573767 549 ntBASIC3.39□□□□□ -1.87
CDH3P22223 AC005951.1-201ENST00000576706 485 ntBASIC3.39□□□□□ -1.87
CDH3P22223 AC104564.2-201ENST00000581240 270 ntTSL 3 BASIC3.39□□□□□ -1.87
CDH3P22223 MIR544B-201ENST00000582372 78 ntBASIC3.39□□□□□ -1.87
CDH3P22223 SRGNP1-201ENST00000603392 451 ntBASIC3.39□□□□□ -1.87
CDH3P22223 IGKV1OR2-6-201ENST00000603485 277 ntBASIC3.39□□□□□ -1.87
CDH3P22223 BCRP9-201ENST00000605312 388 ntBASIC3.39□□□□□ -1.87
CDH3P22223 AL110115.1-201ENST00000614396 364 ntBASIC3.39□□□□□ -1.87
CDH3P22223 AC068831.7-201ENST00000616954 363 ntBASIC3.39□□□□□ -1.87
CDH3P22223 AC091931.1-201ENST00000623488 728 ntBASIC3.39□□□□□ -1.87
CDH3P22223 U6.105-201ENST00000637379 88 ntBASIC3.39□□□□□ -1.87
CDH3P22223 AC006927.3-201ENST00000638789 384 ntBASIC3.39□□□□□ -1.87
CDH3P22223 ZNF266-204ENST00000590306 3317 ntAPPRIS P1 TSL 1 (best) BASIC3.39□□□□□ -1.87
CDH3P22223 SAMD3-214ENST00000532763 3690 ntTSL 5 BASIC3.39□□□□□ -1.87
CDH3P22223 GNAI3-201ENST00000369851 27174 ntAPPRIS P1 TSL 1 (best) BASIC3.39□□□□□ -1.87
CDH3P22223 DCUN1D1-201ENST00000292782 7954 ntAPPRIS P1 TSL 1 (best) BASIC3.38□□□□□ -1.87
CDH3P22223 UTS2-202ENST00000361696 559 ntAPPRIS ALT2 TSL 1 (best) BASIC3.38□□□□□ -1.87
CDH3P22223 MIR30E-201ENST00000362104 92 ntBASIC3.38□□□□□ -1.87
CDH3P22223 RNU4-35P-201ENST00000362588 141 ntBASIC3.38□□□□□ -1.87
CDH3P22223 Y_RNA.97-201ENST00000363094 102 ntBASIC3.38□□□□□ -1.87
CDH3P22223 MS4A4E-201ENST00000398984 479 ntTSL 5 BASIC3.38□□□□□ -1.87
CDH3P22223 U3.39-201ENST00000408569 239 ntBASIC3.38□□□□□ -1.87
CDH3P22223 MRPL30-202ENST00000409145 562 ntTSL 2 BASIC3.38□□□□□ -1.87
CDH3P22223 RNU6-1077P-201ENST00000410506 102 ntBASIC3.38□□□□□ -1.87
CDH3P22223 RAD23BP2-201ENST00000416003 1207 ntBASIC3.38□□□□□ -1.87
CDH3P22223 MTCO3P12-201ENST00000416718 547 ntBASIC3.38□□□□□ -1.87
CDH3P22223 LINC01794-201ENST00000420187 549 ntTSL 4 BASIC3.38□□□□□ -1.87
CDH3P22223 Z99497.1-201ENST00000421282 135 ntBASIC3.38□□□□□ -1.87
CDH3P22223 AC012498.1-201ENST00000424037 437 ntBASIC3.38□□□□□ -1.87
CDH3P22223 AC233728.2-201ENST00000425348 757 ntBASIC3.38□□□□□ -1.87
CDH3P22223 AC006989.1-201ENST00000427212 131 ntBASIC3.38□□□□□ -1.87
CDH3P22223 AL080248.1-201ENST00000428954 388 ntTSL 3 BASIC3.38□□□□□ -1.87
CDH3P22223 ATP5JP1-201ENST00000431631 322 ntBASIC3.38□□□□□ -1.87
CDH3P22223 AL159987.2-201ENST00000432754 307 ntBASIC3.38□□□□□ -1.87
CDH3P22223 Z83839.2-201ENST00000436294 274 ntTSL 5 BASIC3.38□□□□□ -1.87
CDH3P22223 ZNF385D-AS2-201ENST00000436306 424 ntTSL 5 BASIC3.38□□□□□ -1.87
CDH3P22223 RPL23AP22-201ENST00000437556 453 ntBASIC3.38□□□□□ -1.87
CDH3P22223 AP002512.3-201ENST00000440231 985 ntAPPRIS P1 BASIC3.38□□□□□ -1.87
CDH3P22223 MYCBP2-AS1-202ENST00000448470 333 ntTSL 3 BASIC3.38□□□□□ -1.87
CDH3P22223 RPL36AP33-201ENST00000450395 310 ntBASIC3.38□□□□□ -1.87
CDH3P22223 KATNBL1P6-201ENST00000453433 915 ntBASIC3.38□□□□□ -1.87
CDH3P22223 snoU13.4-201ENST00000458916 104 ntBASIC3.38□□□□□ -1.87
CDH3P22223 AC104563.1-201ENST00000476147 376 ntBASIC3.38□□□□□ -1.87
CDH3P22223 AC109486.1-201ENST00000486833 374 ntBASIC3.38□□□□□ -1.87
CDH3P22223 AC097521.1-201ENST00000505488 567 ntTSL 3 BASIC3.38□□□□□ -1.87
CDH3P22223 LINC02469-201ENST00000506460 741 ntTSL 3 BASIC3.38□□□□□ -1.87
CDH3P22223 POU5F1P7-201ENST00000508759 541 ntBASIC3.38□□□□□ -1.87
CDH3P22223 LINC02112-202ENST00000512976 464 ntTSL 3 BASIC3.38□□□□□ -1.87
CDH3P22223 RNU2-27P-201ENST00000516185 142 ntBASIC3.38□□□□□ -1.87
CDH3P22223 RNU6-714P-201ENST00000516963 103 ntBASIC3.38□□□□□ -1.87
CDH3P22223 AC106038.2-201ENST00000520706 568 ntBASIC3.38□□□□□ -1.87
CDH3P22223 AP004247.1-201ENST00000531556 1289 ntBASIC3.38□□□□□ -1.87
CDH3P22223 AL133166.1-201ENST00000551040 1034 ntTSL 4 BASIC3.38□□□□□ -1.87
CDH3P22223 LINC02345-201ENST00000557883 766 ntTSL 3 BASIC3.38□□□□□ -1.87
CDH3P22223 AC118755.1-201ENST00000572923 195 ntTSL 3 BASIC3.38□□□□□ -1.87
CDH3P22223 AC090615.1-201ENST00000577519 154 ntBASIC3.38□□□□□ -1.87
CDH3P22223 AC023394.2-201ENST00000581987 792 ntTSL 5 BASIC3.38□□□□□ -1.87
CDH3P22223 BNIP3P23-201ENST00000599655 511 ntBASIC3.38□□□□□ -1.87
CDH3P22223 AC010620.1-201ENST00000601088 1102 ntBASIC3.38□□□□□ -1.87
CDH3P22223 XIAPP1-201ENST00000603162 600 ntBASIC3.38□□□□□ -1.87
CDH3P22223 AC055876.5-201ENST00000605667 259 ntBASIC3.38□□□□□ -1.87
CDH3P22223 AL355365.1-201ENST00000616480 294 ntBASIC3.38□□□□□ -1.87
CDH3P22223 AL354810.1-201ENST00000618134 635 ntTSL 3 BASIC3.38□□□□□ -1.87
CDH3P22223 SOX2-OT-255ENST00000630150 649 ntTSL 5 BASIC3.38□□□□□ -1.87
CDH3P22223 AC127502.3-201ENST00000636170 1206 ntBASIC3.38□□□□□ -1.87
CDH3P22223 RNF17-204ENST00000339524 2203 ntTSL 2 BASIC3.38□□□□□ -1.87
CDH3P22223 AC004972.1-201ENST00000623934 2209 ntBASIC3.38□□□□□ -1.87
CDH3P22223 HNRNPC-203ENST00000430246 4501 ntAPPRIS P2 TSL 1 (best) BASIC3.37□□□□□ -1.87
CDH3P22223 GPRC6A-201ENST00000310357 2860 ntAPPRIS P1 TSL 1 (best) BASIC3.37□□□□□ -1.87
CDH3P22223 MS4A5-201ENST00000300190 722 ntAPPRIS P1 TSL 1 (best) BASIC3.37□□□□□ -1.87
CDH3P22223 AL161781.1-201ENST00000354277 403 ntBASIC3.37□□□□□ -1.87
CDH3P22223 MIR490-201ENST00000384865 128 ntBASIC3.37□□□□□ -1.87
CDH3P22223 MIR34B-201ENST00000385076 84 ntBASIC3.37□□□□□ -1.87
CDH3P22223 MIR1302-8-201ENST00000408342 128 ntBASIC3.37□□□□□ -1.87
CDH3P22223 RNU2-47P-201ENST00000410649 186 ntBASIC3.37□□□□□ -1.87
CDH3P22223 RNA5SP31-201ENST00000411144 127 ntBASIC3.37□□□□□ -1.87
Retrieved 100 of 98,524 protein–RNA pairs in 88.1 ms