Protein–RNA interactions for Protein: Q9Y5H8

PCDHA3, Protocadherin alpha-3, humanhuman

Predictions only

Length 950 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHA3Q9Y5H8 HMGN2P28-201ENST00000606102 262 ntBASIC4.27□□□□□ -1.73
PCDHA3Q9Y5H8 AC109471.3-201ENST00000625219 233 ntTSL 5 BASIC4.27□□□□□ -1.73
PCDHA3Q9Y5H8 LINC01021-204ENST00000512067 1610 ntTSL 1 (best) BASIC4.27□□□□□ -1.73
PCDHA3Q9Y5H8 GMFB-208ENST00000554908 6721 ntTSL 1 (best) BASIC4.27□□□□□ -1.73
PCDHA3Q9Y5H8 FAR2-203ENST00000547116 1787 ntTSL 2 BASIC4.27□□□□□ -1.73
PCDHA3Q9Y5H8 FAM197Y9-201ENST00000451062 2332 ntTSL 5 BASIC4.27□□□□□ -1.73
PCDHA3Q9Y5H8 LINC00630-205ENST00000440496 2101 ntTSL 1 (best) BASIC4.27□□□□□ -1.73
PCDHA3Q9Y5H8 C1orf112-203ENST00000413811 2661 ntAPPRIS ALT2 TSL 1 (best) BASIC4.27□□□□□ -1.73
PCDHA3Q9Y5H8 KCNJ16-209ENST00000589377 3684 ntAPPRIS P1 TSL 5 BASIC4.26□□□□□ -1.73
PCDHA3Q9Y5H8 CCNH-206ENST00000508855 2391 ntTSL 1 (best) BASIC4.26□□□□□ -1.73
PCDHA3Q9Y5H8 ZSCAN26-204ENST00000614088 2321 ntTSL 3 BASIC4.26□□□□□ -1.73
PCDHA3Q9Y5H8 FAM111B-202ENST00000411426 3344 ntTSL 4 BASIC4.26□□□□□ -1.73
PCDHA3Q9Y5H8 TNP2-201ENST00000312693 626 ntAPPRIS P1 TSL 1 (best) BASIC4.26□□□□□ -1.73
PCDHA3Q9Y5H8 HSPE1P11-201ENST00000339579 310 ntBASIC4.26□□□□□ -1.73
PCDHA3Q9Y5H8 RNU6-1090P-201ENST00000364065 94 ntBASIC4.26□□□□□ -1.73
PCDHA3Q9Y5H8 AL133412.1-201ENST00000380194 2992 ntBASIC4.26□□□□□ -1.73
PCDHA3Q9Y5H8 RNU6-483P-201ENST00000384088 108 ntBASIC4.26□□□□□ -1.73
PCDHA3Q9Y5H8 RNU6-74P-201ENST00000384235 107 ntBASIC4.26□□□□□ -1.73
PCDHA3Q9Y5H8 AC005062.1-206ENST00000424516 710 ntTSL 3 BASIC4.26□□□□□ -1.73
PCDHA3Q9Y5H8 AL732292.1-201ENST00000426692 226 ntBASIC4.26□□□□□ -1.73
PCDHA3Q9Y5H8 AL590378.1-201ENST00000426818 303 ntTSL 3 BASIC4.26□□□□□ -1.73
PCDHA3Q9Y5H8 AL451129.1-201ENST00000437471 285 ntTSL 3 BASIC4.26□□□□□ -1.73
PCDHA3Q9Y5H8 AF228730.2-201ENST00000438784 848 ntBASIC4.26□□□□□ -1.73
PCDHA3Q9Y5H8 AL356535.1-201ENST00000440335 398 ntBASIC4.26□□□□□ -1.73
PCDHA3Q9Y5H8 AL662791.1-201ENST00000441992 928 ntBASIC4.26□□□□□ -1.73
PCDHA3Q9Y5H8 AC099566.1-201ENST00000442558 479 ntTSL 3 BASIC4.26□□□□□ -1.73
PCDHA3Q9Y5H8 AL121871.1-201ENST00000443413 436 ntBASIC4.26□□□□□ -1.73
PCDHA3Q9Y5H8 MCCC1-AS1-201ENST00000471731 765 ntTSL 5 BASIC4.26□□□□□ -1.73
PCDHA3Q9Y5H8 AC041039.1-201ENST00000485656 536 ntBASIC4.26□□□□□ -1.73
PCDHA3Q9Y5H8 LINC01326-201ENST00000495159 755 ntTSL 2 BASIC4.26□□□□□ -1.73
PCDHA3Q9Y5H8 AC114797.1-201ENST00000514003 728 ntBASIC4.26□□□□□ -1.73
PCDHA3Q9Y5H8 Y_RNA.704-201ENST00000516851 102 ntBASIC4.26□□□□□ -1.73
PCDHA3Q9Y5H8 RNU6-64P-201ENST00000517119 105 ntBASIC4.26□□□□□ -1.73
PCDHA3Q9Y5H8 AC100870.1-201ENST00000522035 505 ntBASIC4.26□□□□□ -1.73
PCDHA3Q9Y5H8 AC084083.1-201ENST00000526947 722 ntTSL 5 BASIC4.26□□□□□ -1.73
PCDHA3Q9Y5H8 DEFB109D-201ENST00000529497 240 ntBASIC4.26□□□□□ -1.73
PCDHA3Q9Y5H8 AC013762.1-201ENST00000531136 467 ntTSL 3 BASIC4.26□□□□□ -1.73
PCDHA3Q9Y5H8 AC118273.2-201ENST00000532092 465 ntBASIC4.26□□□□□ -1.73
PCDHA3Q9Y5H8 MGST1-215ENST00000540056 546 ntTSL 3 BASIC4.26□□□□□ -1.73
PCDHA3Q9Y5H8 GNRHR2P1-201ENST00000555315 631 ntBASIC4.26□□□□□ -1.73
PCDHA3Q9Y5H8 RPL21P12-201ENST00000559810 515 ntBASIC4.26□□□□□ -1.73
PCDHA3Q9Y5H8 HMGB1P6-201ENST00000569046 646 ntBASIC4.26□□□□□ -1.73
PCDHA3Q9Y5H8 MIR4284-201ENST00000578924 81 ntBASIC4.26□□□□□ -1.73
PCDHA3Q9Y5H8 MSMB-201ENST00000581478 386 ntTSL 1 (best) BASIC4.26□□□□□ -1.73
PCDHA3Q9Y5H8 MIR5096-201ENST00000583713 70 ntBASIC4.26□□□□□ -1.73
PCDHA3Q9Y5H8 KLHL23-207ENST00000602521 630 ntTSL 3 BASIC4.26□□□□□ -1.73
PCDHA3Q9Y5H8 AP001596.2-201ENST00000608410 312 ntBASIC4.26□□□□□ -1.73
PCDHA3Q9Y5H8 AC098617.1-203ENST00000609865 277 ntTSL 5 BASIC4.26□□□□□ -1.73
PCDHA3Q9Y5H8 AL445584.2-201ENST00000614030 616 ntTSL 5 BASIC4.26□□□□□ -1.73
PCDHA3Q9Y5H8 AC097478.4-201ENST00000615968 522 ntTSL 5 BASIC4.26□□□□□ -1.73
PCDHA3Q9Y5H8 RMST_9.1-201ENST00000619945 193 ntBASIC4.26□□□□□ -1.73
PCDHA3Q9Y5H8 AC244100.1-202ENST00000621554 382 ntBASIC4.26□□□□□ -1.73
PCDHA3Q9Y5H8 CACNB4-233ENST00000636773 4143 ntTSL 5 BASIC4.26□□□□□ -1.73
PCDHA3Q9Y5H8 ZNF266-203ENST00000588933 3293 ntAPPRIS P1 TSL 1 (best) BASIC4.26□□□□□ -1.73
PCDHA3Q9Y5H8 NR3C1-206ENST00000424646 4591 ntTSL 1 (best) BASIC4.26□□□□□ -1.73
PCDHA3Q9Y5H8 AGTR2-201ENST00000371906 2882 ntAPPRIS P1 TSL 1 (best) BASIC4.26□□□□□ -1.73
PCDHA3Q9Y5H8 OR2H1-202ENST00000377133 3021 ntAPPRIS P1 BASIC4.26□□□□□ -1.73
PCDHA3Q9Y5H8 CSRNP3-202ENST00000342316 11684 ntAPPRIS P1 TSL 1 (best) BASIC4.26□□□□□ -1.73
PCDHA3Q9Y5H8 ANKRD20A10P-201ENST00000457591 1515 ntBASIC4.26□□□□□ -1.73
PCDHA3Q9Y5H8 LINC01239-202ENST00000436786 2347 ntTSL 2 BASIC4.26□□□□□ -1.73
PCDHA3Q9Y5H8 AGBL2-201ENST00000357610 3295 ntAPPRIS ALT2 TSL 5 BASIC4.26□□□□□ -1.73
PCDHA3Q9Y5H8 RPAP2-203ENST00000610020 16993 ntAPPRIS P1 TSL 1 (best) BASIC4.26□□□□□ -1.73
PCDHA3Q9Y5H8 AC139713.2-214ENST00000642059 1811 ntBASIC4.25□□□□□ -1.73
PCDHA3Q9Y5H8 BDP1P-201ENST00000582658 1990 ntBASIC4.25□□□□□ -1.73
PCDHA3Q9Y5H8 FAM35DP-201ENST00000323387 2712 ntBASIC4.25□□□□□ -1.73
PCDHA3Q9Y5H8 CCDC102B-201ENST00000360242 2711 ntAPPRIS P1 TSL 1 (best) BASIC4.25□□□□□ -1.73
PCDHA3Q9Y5H8 DDX10P1-201ENST00000448545 1933 ntBASIC4.25□□□□□ -1.73
PCDHA3Q9Y5H8 NEGR1-201ENST00000306821 5577 ntTSL 1 (best) BASIC4.25□□□□□ -1.73
PCDHA3Q9Y5H8 LINC01733-201ENST00000449316 4604 ntTSL 1 (best) BASIC4.25□□□□□ -1.73
PCDHA3Q9Y5H8 RNU5E-8P-201ENST00000363502 116 ntBASIC4.25□□□□□ -1.73
PCDHA3Q9Y5H8 RNU6-1279P-201ENST00000383917 103 ntBASIC4.25□□□□□ -1.73
PCDHA3Q9Y5H8 RNY3P14-201ENST00000384309 102 ntBASIC4.25□□□□□ -1.73
PCDHA3Q9Y5H8 RNU4-25P-201ENST00000410569 230 ntBASIC4.25□□□□□ -1.73
PCDHA3Q9Y5H8 RNA5SP107-201ENST00000411358 122 ntBASIC4.25□□□□□ -1.73
PCDHA3Q9Y5H8 AC011933.1-201ENST00000413334 321 ntBASIC4.25□□□□□ -1.73
PCDHA3Q9Y5H8 PSMA4-202ENST00000413382 1019 ntTSL 1 (best) BASIC4.25□□□□□ -1.73
PCDHA3Q9Y5H8 AL353612.1-201ENST00000428769 465 ntTSL 3 BASIC4.25□□□□□ -1.73
PCDHA3Q9Y5H8 COX6B1P7-201ENST00000430845 235 ntBASIC4.25□□□□□ -1.73
PCDHA3Q9Y5H8 AC087650.1-201ENST00000431445 468 ntBASIC4.25□□□□□ -1.73
PCDHA3Q9Y5H8 RPL23AP30-201ENST00000432419 501 ntBASIC4.25□□□□□ -1.73
PCDHA3Q9Y5H8 BTF3P10-201ENST00000433415 495 ntBASIC4.25□□□□□ -1.73
PCDHA3Q9Y5H8 AC097347.1-201ENST00000438499 517 ntTSL 3 BASIC4.25□□□□□ -1.73
PCDHA3Q9Y5H8 HMGB3P12-201ENST00000438745 556 ntBASIC4.25□□□□□ -1.73
PCDHA3Q9Y5H8 LINC00280-201ENST00000439525 448 ntTSL 2 BASIC4.25□□□□□ -1.73
PCDHA3Q9Y5H8 AL157882.1-201ENST00000447148 429 ntTSL 3 BASIC4.25□□□□□ -1.73
PCDHA3Q9Y5H8 AC006480.1-201ENST00000449887 378 ntBASIC4.25□□□□□ -1.73
PCDHA3Q9Y5H8 AL034349.1-201ENST00000458367 549 ntTSL 5 BASIC4.25□□□□□ -1.73
PCDHA3Q9Y5H8 AC116533.1-201ENST00000459748 321 ntBASIC4.25□□□□□ -1.73
PCDHA3Q9Y5H8 RPL23AP2-201ENST00000471227 466 ntBASIC4.25□□□□□ -1.73
PCDHA3Q9Y5H8 RPS15AP36-201ENST00000492022 382 ntBASIC4.25□□□□□ -1.73
PCDHA3Q9Y5H8 RPL29P14-201ENST00000495837 428 ntBASIC4.25□□□□□ -1.73
PCDHA3Q9Y5H8 AC069360.1-201ENST00000503469 431 ntTSL 2 BASIC4.25□□□□□ -1.73
PCDHA3Q9Y5H8 AC092673.1-201ENST00000510203 428 ntTSL 3 BASIC4.25□□□□□ -1.73
PCDHA3Q9Y5H8 AC022360.2-202ENST00000517308 407 ntTSL 3 BASIC4.25□□□□□ -1.73
PCDHA3Q9Y5H8 AC060765.1-201ENST00000522776 544 ntTSL 4 BASIC4.25□□□□□ -1.73
PCDHA3Q9Y5H8 AC024681.2-201ENST00000523525 204 ntTSL 5 BASIC4.25□□□□□ -1.73
PCDHA3Q9Y5H8 AF117829.1-210ENST00000523859 696 ntTSL 3 BASIC4.25□□□□□ -1.73
PCDHA3Q9Y5H8 MS4A4E-204ENST00000526086 460 ntTSL 1 (best) BASIC4.25□□□□□ -1.73
PCDHA3Q9Y5H8 AC023442.3-203ENST00000530946 533 ntTSL 4 BASIC4.25□□□□□ -1.73
PCDHA3Q9Y5H8 LINC01495-202ENST00000534135 343 ntTSL 2 BASIC4.25□□□□□ -1.73
Retrieved 100 of 98,524 protein–RNA pairs in 240 ms