Protein–RNA interactions for Protein: Q9Y2N7

HIF3A, Hypoxia-inducible factor 3-alpha, humanhuman

Predictions only

Length 669 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HIF3AQ9Y2N7 AC099677.1-201ENST00000420575 175 ntBASIC4.93□□□□□ -1.62
HIF3AQ9Y2N7 AP001476.3-201ENST00000429512 415 ntTSL 3 BASIC4.93□□□□□ -1.62
HIF3AQ9Y2N7 KCND3-IT1-201ENST00000439736 376 ntTSL 3 BASIC4.93□□□□□ -1.62
HIF3AQ9Y2N7 MYO9A-203ENST00000444904 7749 ntAPPRIS P2 TSL 5 BASIC4.93□□□□□ -1.62
HIF3AQ9Y2N7 HMGN1P2-201ENST00000445197 310 ntBASIC4.93□□□□□ -1.62
HIF3AQ9Y2N7 RN7SL189P-201ENST00000468631 289 ntBASIC4.93□□□□□ -1.62
HIF3AQ9Y2N7 CREM-226ENST00000469949 721 ntTSL 3 BASIC4.93□□□□□ -1.62
HIF3AQ9Y2N7 LINC01206-203ENST00000476815 482 ntTSL 3 BASIC4.93□□□□□ -1.62
HIF3AQ9Y2N7 VN1R105P-201ENST00000486595 910 ntBASIC4.93□□□□□ -1.62
HIF3AQ9Y2N7 CREM-238ENST00000488741 651 ntTSL 2 BASIC4.93□□□□□ -1.62
HIF3AQ9Y2N7 ENSA-211ENST00000503345 793 ntTSL 3 BASIC4.93□□□□□ -1.62
HIF3AQ9Y2N7 AC093852.1-201ENST00000503587 266 ntBASIC4.93□□□□□ -1.62
HIF3AQ9Y2N7 LEF1-218ENST00000512172 598 ntTSL 2 BASIC4.93□□□□□ -1.62
HIF3AQ9Y2N7 LINC01337-201ENST00000515871 440 ntTSL 3 BASIC4.93□□□□□ -1.62
HIF3AQ9Y2N7 RNU6-390P-201ENST00000516259 103 ntBASIC4.93□□□□□ -1.62
HIF3AQ9Y2N7 SCARNA20.4-201ENST00000516969 131 ntBASIC4.93□□□□□ -1.62
HIF3AQ9Y2N7 GLYATL1P2-201ENST00000529451 510 ntTSL 2 BASIC4.93□□□□□ -1.62
HIF3AQ9Y2N7 AC069437.1-201ENST00000551372 512 ntTSL 4 BASIC4.93□□□□□ -1.62
HIF3AQ9Y2N7 UACA-211ENST00000560441 4723 ntAPPRIS ALT2 TSL 5 BASIC4.93□□□□□ -1.62
HIF3AQ9Y2N7 MRPS21P7-201ENST00000566937 238 ntBASIC4.93□□□□□ -1.62
HIF3AQ9Y2N7 AC092138.1-201ENST00000568659 472 ntTSL 2 BASIC4.93□□□□□ -1.62
HIF3AQ9Y2N7 AC005899.1-201ENST00000584125 563 ntTSL 5 BASIC4.93□□□□□ -1.62
HIF3AQ9Y2N7 MRO-208ENST00000588444 866 ntTSL 3 BASIC4.93□□□□□ -1.62
HIF3AQ9Y2N7 RNMT-206ENST00000589866 1879 ntAPPRIS P1 TSL 1 (best) BASIC4.93□□□□□ -1.62
HIF3AQ9Y2N7 ZRANB2-AS2-213ENST00000591654 719 ntTSL 5 BASIC4.93□□□□□ -1.62
HIF3AQ9Y2N7 AC012119.1-201ENST00000603184 222 ntBASIC4.93□□□□□ -1.62
HIF3AQ9Y2N7 AC108738.1-201ENST00000603703 237 ntBASIC4.93□□□□□ -1.62
HIF3AQ9Y2N7 AC006363.1-201ENST00000603806 463 ntBASIC4.93□□□□□ -1.62
HIF3AQ9Y2N7 AC004792.1-201ENST00000614523 137 ntBASIC4.93□□□□□ -1.62
HIF3AQ9Y2N7 AL672167.1-205ENST00000641112 3080 ntBASIC4.93□□□□□ -1.62
HIF3AQ9Y2N7 OR13C1P-202ENST00000641378 2919 ntBASIC4.93□□□□□ -1.62
HIF3AQ9Y2N7 RNMT-202ENST00000383314 6250 ntAPPRIS P1 TSL 1 (best) BASIC4.93□□□□□ -1.62
HIF3AQ9Y2N7 ESRRG-204ENST00000361525 5363 ntAPPRIS P1 TSL 5 BASIC4.93□□□□□ -1.62
HIF3AQ9Y2N7 NUP35-201ENST00000295119 1633 ntAPPRIS P1 TSL 1 (best) BASIC4.93□□□□□ -1.62
HIF3AQ9Y2N7 MCF2L2-202ENST00000414362 3031 ntTSL 2 BASIC4.93□□□□□ -1.62
HIF3AQ9Y2N7 AL022322.2-201ENST00000624072 20397 ntBASIC4.93□□□□□ -1.62
HIF3AQ9Y2N7 DNAJC2-201ENST00000249270 1846 ntTSL 1 (best) BASIC4.93□□□□□ -1.62
HIF3AQ9Y2N7 LIPI-203ENST00000536861 1529 ntAPPRIS ALT2 TSL 1 (best) BASIC4.92□□□□□ -1.62
HIF3AQ9Y2N7 VPS50-202ENST00000305866 3613 ntAPPRIS P1 TSL 1 (best) BASIC4.92□□□□□ -1.62
HIF3AQ9Y2N7 AC008695.1-201ENST00000514667 6393 ntAPPRIS P1 TSL 2 BASIC4.92□□□□□ -1.62
HIF3AQ9Y2N7 BTBD10P1-201ENST00000549824 1352 ntBASIC4.92□□□□□ -1.62
HIF3AQ9Y2N7 CARF-208ENST00000428585 2513 ntTSL 2 BASIC4.92□□□□□ -1.62
HIF3AQ9Y2N7 ADGRL3-217ENST00000514591 6297 ntAPPRIS P2 TSL 5 BASIC4.92□□□□□ -1.62
HIF3AQ9Y2N7 CRISP1-201ENST00000329411 1709 ntTSL 5 BASIC4.92□□□□□ -1.62
HIF3AQ9Y2N7 POLE2-206ENST00000554396 1581 ntTSL 1 (best) BASIC4.92□□□□□ -1.62
HIF3AQ9Y2N7 A1CF-205ENST00000374001 9221 ntAPPRIS ALT1 TSL 5 BASIC4.92□□□□□ -1.62
HIF3AQ9Y2N7 AC016576.1-201ENST00000637153 3585 ntTSL 5 BASIC4.92□□□□□ -1.62
HIF3AQ9Y2N7 PRKAA1-204ENST00000397128 5088 ntAPPRIS P1 TSL 1 (best) BASIC4.92□□□□□ -1.62
HIF3AQ9Y2N7 CENPI-202ENST00000372927 3262 ntAPPRIS P3 TSL 5 BASIC4.92□□□□□ -1.62
HIF3AQ9Y2N7 ZNF782-208ENST00000535338 3296 ntAPPRIS P1 TSL 3 BASIC4.92□□□□□ -1.62
HIF3AQ9Y2N7 ZNF334-203ENST00000593880 2635 ntTSL 1 (best) BASIC4.92□□□□□ -1.62
HIF3AQ9Y2N7 Y_RNA.20-201ENST00000362479 113 ntBASIC4.92□□□□□ -1.62
HIF3AQ9Y2N7 Y_RNA.29-201ENST00000362570 113 ntBASIC4.92□□□□□ -1.62
HIF3AQ9Y2N7 Y_RNA.297-201ENST00000364950 91 ntBASIC4.92□□□□□ -1.62
HIF3AQ9Y2N7 SNORA48.4-201ENST00000391089 134 ntBASIC4.92□□□□□ -1.62
HIF3AQ9Y2N7 SNORA68.2-201ENST00000391263 128 ntBASIC4.92□□□□□ -1.62
HIF3AQ9Y2N7 EFCAB9-201ENST00000398186 702 ntAPPRIS P1 TSL 3 BASIC4.92□□□□□ -1.62
HIF3AQ9Y2N7 AC092111.3-201ENST00000402465 496 ntAPPRIS P1 TSL 2 BASIC4.92□□□□□ -1.62
HIF3AQ9Y2N7 MIR548I2-201ENST00000408348 149 ntBASIC4.92□□□□□ -1.62
HIF3AQ9Y2N7 RNU6ATAC16P-201ENST00000408591 138 ntBASIC4.92□□□□□ -1.62
HIF3AQ9Y2N7 RNU2-33P-201ENST00000410344 192 ntBASIC4.92□□□□□ -1.62
HIF3AQ9Y2N7 RNA5SP296-201ENST00000410523 111 ntBASIC4.92□□□□□ -1.62
HIF3AQ9Y2N7 HMGN1P20-201ENST00000411849 300 ntBASIC4.92□□□□□ -1.62
HIF3AQ9Y2N7 AL133173.1-201ENST00000423458 397 ntBASIC4.92□□□□□ -1.62
HIF3AQ9Y2N7 UBE2V1P4-201ENST00000425374 344 ntBASIC4.92□□□□□ -1.62
HIF3AQ9Y2N7 AL606753.1-201ENST00000427435 87 ntBASIC4.92□□□□□ -1.62
HIF3AQ9Y2N7 RPL7AP49-201ENST00000429522 581 ntBASIC4.92□□□□□ -1.62
HIF3AQ9Y2N7 PMCHL1-204ENST00000430902 659 ntTSL 1 (best) BASIC4.92□□□□□ -1.62
HIF3AQ9Y2N7 AL133396.1-201ENST00000432048 687 ntBASIC4.92□□□□□ -1.62
HIF3AQ9Y2N7 AL591438.1-201ENST00000433508 581 ntBASIC4.92□□□□□ -1.62
HIF3AQ9Y2N7 AL645568.3-201ENST00000433683 316 ntBASIC4.92□□□□□ -1.62
HIF3AQ9Y2N7 NEFMP1-201ENST00000443423 1006 ntBASIC4.92□□□□□ -1.62
HIF3AQ9Y2N7 AP000281.1-201ENST00000444036 316 ntBASIC4.92□□□□□ -1.62
HIF3AQ9Y2N7 LINC01422-203ENST00000447149 509 ntTSL 4 BASIC4.92□□□□□ -1.62
HIF3AQ9Y2N7 AL359715.2-201ENST00000452402 682 ntTSL 2 BASIC4.92□□□□□ -1.62
HIF3AQ9Y2N7 AC144530.1-201ENST00000452862 555 ntBASIC4.92□□□□□ -1.62
HIF3AQ9Y2N7 PCMTD1P1-201ENST00000455560 355 ntBASIC4.92□□□□□ -1.62
HIF3AQ9Y2N7 LINC01399-202ENST00000458450 244 ntBASIC4.92□□□□□ -1.62
HIF3AQ9Y2N7 GSTM1-206ENST00000483399 512 ntTSL 3 BASIC4.92□□□□□ -1.62
HIF3AQ9Y2N7 AC091180.4-201ENST00000511322 245 ntTSL 2 BASIC4.92□□□□□ -1.62
HIF3AQ9Y2N7 AC034238.3-201ENST00000512349 591 ntTSL 4 BASIC4.92□□□□□ -1.62
HIF3AQ9Y2N7 RNU6-352P-201ENST00000516908 107 ntBASIC4.92□□□□□ -1.62
HIF3AQ9Y2N7 RNU6-677P-201ENST00000516914 101 ntBASIC4.92□□□□□ -1.62
HIF3AQ9Y2N7 AP004609.2-201ENST00000532177 190 ntBASIC4.92□□□□□ -1.62
HIF3AQ9Y2N7 CBX3P8-201ENST00000532412 525 ntBASIC4.92□□□□□ -1.62
HIF3AQ9Y2N7 AC107918.3-201ENST00000533272 382 ntBASIC4.92□□□□□ -1.62
HIF3AQ9Y2N7 AC013565.1-201ENST00000565938 597 ntTSL 2 BASIC4.92□□□□□ -1.62
HIF3AQ9Y2N7 AC093227.2-201ENST00000589357 285 ntBASIC4.92□□□□□ -1.62
HIF3AQ9Y2N7 ZNF667-AS1-207ENST00000592146 668 ntTSL 5 BASIC4.92□□□□□ -1.62
HIF3AQ9Y2N7 AC012616.1-201ENST00000600294 197 ntBASIC4.92□□□□□ -1.62
HIF3AQ9Y2N7 GMFG-212ENST00000602185 423 ntTSL 3 BASIC4.92□□□□□ -1.62
HIF3AQ9Y2N7 MIR1244-1-201ENST00000612829 85 ntBASIC4.92□□□□□ -1.62
HIF3AQ9Y2N7 AL159153.1-201ENST00000619688 317 ntBASIC4.92□□□□□ -1.62
HIF3AQ9Y2N7 AC091903.1-201ENST00000624322 454 ntBASIC4.92□□□□□ -1.62
HIF3AQ9Y2N7 LAMTOR5-AS1-244ENST00000629484 780 ntTSL 5 BASIC4.92□□□□□ -1.62
HIF3AQ9Y2N7 MIR1244-3-201ENST00000635744 85 ntBASIC4.92□□□□□ -1.62
HIF3AQ9Y2N7 MIR1244-2-201ENST00000636449 85 ntBASIC4.92□□□□□ -1.62
HIF3AQ9Y2N7 MIR1244-4-202ENST00000636813 85 ntBASIC4.92□□□□□ -1.62
HIF3AQ9Y2N7 AL807742.1-203ENST00000637444 759 ntTSL 5 BASIC4.92□□□□□ -1.62
HIF3AQ9Y2N7 ZEB1-219ENST00000560721 3368 ntAPPRIS ALT2 TSL 2 BASIC4.92□□□□□ -1.62
Retrieved 100 of 98,524 protein–RNA pairs in 100.8 ms