Protein–RNA interactions for Protein: Q9Y261

FOXA2, Hepatocyte nuclear factor 3-beta, humanhuman

Predicted RBP Predictions only

Length 457 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA2Q9Y261 RN7SKP202-201ENST00000410439 330 ntBASIC2.94□□□□□ -1.94
FOXA2Q9Y261 RPL21P24-201ENST00000413752 448 ntBASIC2.94□□□□□ -1.94
FOXA2Q9Y261 LINC01402-201ENST00000422226 279 ntTSL 3 BASIC2.94□□□□□ -1.94
FOXA2Q9Y261 MACC1-AS1-201ENST00000439285 639 ntTSL 3 BASIC2.94□□□□□ -1.94
FOXA2Q9Y261 AC073174.1-201ENST00000444155 415 ntTSL 5 BASIC2.94□□□□□ -1.94
FOXA2Q9Y261 RNU7-59P-201ENST00000459101 61 ntBASIC2.94□□□□□ -1.94
FOXA2Q9Y261 MTND4LP3-201ENST00000468320 276 ntBASIC2.94□□□□□ -1.94
FOXA2Q9Y261 AL135752.1-201ENST00000479477 471 ntBASIC2.94□□□□□ -1.94
FOXA2Q9Y261 LARP1BP2-201ENST00000486594 519 ntBASIC2.94□□□□□ -1.94
FOXA2Q9Y261 AC068724.1-201ENST00000487100 792 ntBASIC2.94□□□□□ -1.94
FOXA2Q9Y261 AC114967.1-201ENST00000504890 259 ntBASIC2.94□□□□□ -1.94
FOXA2Q9Y261 HMGN1P11-201ENST00000508668 303 ntBASIC2.94□□□□□ -1.94
FOXA2Q9Y261 SCARNA14-201ENST00000516903 136 ntBASIC2.94□□□□□ -1.94
FOXA2Q9Y261 NRON-201ENST00000517270 370 ntBASIC2.94□□□□□ -1.94
FOXA2Q9Y261 AC104393.1-201ENST00000517495 255 ntTSL 3 BASIC2.94□□□□□ -1.94
FOXA2Q9Y261 IGKV3OR22-2-201ENST00000517943 313 ntBASIC2.94□□□□□ -1.94
FOXA2Q9Y261 AC107909.2-201ENST00000520844 493 ntTSL 3 BASIC2.94□□□□□ -1.94
FOXA2Q9Y261 LINC02235-201ENST00000534675 466 ntTSL 5 BASIC2.94□□□□□ -1.94
FOXA2Q9Y261 AC010175.1-201ENST00000538219 224 ntTSL 5 BASIC2.94□□□□□ -1.94
FOXA2Q9Y261 AC002400.1-201ENST00000569310 726 ntBASIC2.94□□□□□ -1.94
FOXA2Q9Y261 MIR3186-201ENST00000577404 85 ntBASIC2.94□□□□□ -1.94
FOXA2Q9Y261 MIR4425-201ENST00000580572 84 ntBASIC2.94□□□□□ -1.94
FOXA2Q9Y261 MIR5187-201ENST00000583479 76 ntBASIC2.94□□□□□ -1.94
FOXA2Q9Y261 AC098848.1-201ENST00000588466 567 ntTSL 4 BASIC2.94□□□□□ -1.94
FOXA2Q9Y261 VN1R90P-201ENST00000595717 726 ntBASIC2.94□□□□□ -1.94
FOXA2Q9Y261 AC112187.2-201ENST00000604345 283 ntBASIC2.94□□□□□ -1.94
FOXA2Q9Y261 AC018714.1-201ENST00000605028 208 ntBASIC2.94□□□□□ -1.94
FOXA2Q9Y261 BCRP9-201ENST00000605312 388 ntBASIC2.94□□□□□ -1.94
FOXA2Q9Y261 AC034229.4-201ENST00000607861 441 ntBASIC2.94□□□□□ -1.94
FOXA2Q9Y261 AC107214.2-201ENST00000608204 634 ntBASIC2.94□□□□□ -1.94
FOXA2Q9Y261 AC068506.1-202ENST00000613388 545 ntTSL 3 BASIC2.94□□□□□ -1.94
FOXA2Q9Y261 AC012593.1-211ENST00000625996 799 ntTSL 5 BASIC2.94□□□□□ -1.94
FOXA2Q9Y261 VPS8-228ENST00000628962 207 ntTSL 5 BASIC2.94□□□□□ -1.94
FOXA2Q9Y261 KIAA0586-215ENST00000619722 5597 ntAPPRIS ALT2 TSL 2 BASIC2.94□□□□□ -1.94
FOXA2Q9Y261 LINC01111-201ENST00000518732 1663 ntTSL 1 (best) BASIC2.94□□□□□ -1.94
FOXA2Q9Y261 PGGT1B-203ENST00000419445 9545 ntAPPRIS P1 TSL 1 (best) BASIC2.94□□□□□ -1.94
FOXA2Q9Y261 C18orf54-202ENST00000382911 4056 ntTSL 5 BASIC2.93□□□□□ -1.94
FOXA2Q9Y261 CD36-221ENST00000534394 1741 ntTSL 2 BASIC2.93□□□□□ -1.94
FOXA2Q9Y261 DAZ4-201ENST00000382296 2048 ntAPPRIS P5 TSL 5 BASIC2.93□□□□□ -1.94
FOXA2Q9Y261 ESCO1-201ENST00000269214 4523 ntAPPRIS P1 TSL 1 (best) BASIC2.93□□□□□ -1.94
FOXA2Q9Y261 RASSF8-210ENST00000541490 5505 ntAPPRIS P1 TSL 5 BASIC2.93□□□□□ -1.94
FOXA2Q9Y261 UBE2W-203ENST00000517608 8426 ntTSL 1 (best) BASIC2.93□□□□□ -1.94
FOXA2Q9Y261 PCLO-206ENST00000437081 3786 ntTSL 1 (best) BASIC2.93□□□□□ -1.94
FOXA2Q9Y261 KERA-201ENST00000266719 2162 ntAPPRIS P1 TSL 1 (best) BASIC2.93□□□□□ -1.94
FOXA2Q9Y261 CPXCR1-202ENST00000373111 1577 ntAPPRIS P1 TSL 2 BASIC2.93□□□□□ -1.94
FOXA2Q9Y261 C12orf4-201ENST00000261250 3826 ntAPPRIS P1 TSL 1 (best) BASIC2.93□□□□□ -1.94
FOXA2Q9Y261 MS4A5-201ENST00000300190 722 ntAPPRIS P1 TSL 1 (best) BASIC2.93□□□□□ -1.94
FOXA2Q9Y261 Y_RNA.126-201ENST00000363382 111 ntBASIC2.93□□□□□ -1.94
FOXA2Q9Y261 RNA5SP139-201ENST00000364340 117 ntBASIC2.93□□□□□ -1.94
FOXA2Q9Y261 RNU6-660P-201ENST00000364566 109 ntBASIC2.93□□□□□ -1.94
FOXA2Q9Y261 MIR554-201ENST00000384874 96 ntBASIC2.93□□□□□ -1.94
FOXA2Q9Y261 TRAJ16-201ENST00000390521 60 ntAPPRIS P1 BASIC2.93□□□□□ -1.94
FOXA2Q9Y261 AC025750.1-201ENST00000399891 379 ntBASIC2.93□□□□□ -1.94
FOXA2Q9Y261 CYCSP19-201ENST00000411715 316 ntBASIC2.93□□□□□ -1.94
FOXA2Q9Y261 AL513331.1-201ENST00000411908 397 ntBASIC2.93□□□□□ -1.94
FOXA2Q9Y261 AC114763.2-201ENST00000412593 826 ntTSL 2 BASIC2.93□□□□□ -1.94
FOXA2Q9Y261 VPS26BP1-201ENST00000417155 755 ntBASIC2.93□□□□□ -1.94
FOXA2Q9Y261 GCG-202ENST00000418842 1289 ntAPPRIS P1 TSL 1 (best) BASIC2.93□□□□□ -1.94
FOXA2Q9Y261 AC091390.3-201ENST00000426478 338 ntBASIC2.93□□□□□ -1.94
FOXA2Q9Y261 TRIAP1P1-201ENST00000427062 225 ntBASIC2.93□□□□□ -1.94
FOXA2Q9Y261 AC090617.2-201ENST00000433167 404 ntTSL 3 BASIC2.93□□□□□ -1.94
FOXA2Q9Y261 AC007179.2-207ENST00000435557 556 ntTSL 4 BASIC2.93□□□□□ -1.94
FOXA2Q9Y261 Z82210.1-201ENST00000440037 231 ntBASIC2.93□□□□□ -1.94
FOXA2Q9Y261 LINC00366-201ENST00000441430 435 ntTSL 2 BASIC2.93□□□□□ -1.94
FOXA2Q9Y261 PIGFP3-201ENST00000441918 722 ntBASIC2.93□□□□□ -1.94
FOXA2Q9Y261 AL606662.1-201ENST00000445763 553 ntBASIC2.93□□□□□ -1.94
FOXA2Q9Y261 FGF14-AS1-202ENST00000451630 321 ntTSL 2 BASIC2.93□□□□□ -1.94
FOXA2Q9Y261 AL139081.1-201ENST00000452207 382 ntTSL 3 BASIC2.93□□□□□ -1.94
FOXA2Q9Y261 LINC00709-201ENST00000458168 494 ntTSL 2 BASIC2.93□□□□□ -1.94
FOXA2Q9Y261 LINC01445-202ENST00000458615 679 ntTSL 2 BASIC2.93□□□□□ -1.94
FOXA2Q9Y261 AL133162.1-201ENST00000463228 453 ntBASIC2.93□□□□□ -1.94
FOXA2Q9Y261 AC005150.1-201ENST00000512831 628 ntTSL 2 BASIC2.93□□□□□ -1.94
FOXA2Q9Y261 AC010261.1-201ENST00000514411 457 ntTSL 5 BASIC2.93□□□□□ -1.94
FOXA2Q9Y261 RNU6-579P-201ENST00000516879 102 ntBASIC2.93□□□□□ -1.94
FOXA2Q9Y261 RN7SKP60-201ENST00000516985 239 ntBASIC2.93□□□□□ -1.94
FOXA2Q9Y261 CACNA1C-AS4-201ENST00000544415 735 ntTSL 3 BASIC2.93□□□□□ -1.94
FOXA2Q9Y261 AC008011.1-201ENST00000545989 227 ntBASIC2.93□□□□□ -1.94
FOXA2Q9Y261 TRAV28-201ENST00000557548 323 ntBASIC2.93□□□□□ -1.94
FOXA2Q9Y261 AC007342.4-202ENST00000565189 721 ntTSL 3 BASIC2.93□□□□□ -1.94
FOXA2Q9Y261 AMZ2P1-203ENST00000565833 850 ntBASIC2.93□□□□□ -1.94
FOXA2Q9Y261 AC010547.2-201ENST00000568523 409 ntTSL 5 BASIC2.93□□□□□ -1.94
FOXA2Q9Y261 AL133383.1-201ENST00000569292 901 ntTSL 1 (best) BASIC2.93□□□□□ -1.94
FOXA2Q9Y261 AP001004.1-201ENST00000582468 324 ntBASIC2.93□□□□□ -1.94
FOXA2Q9Y261 PPP3CB-AS1-206ENST00000595935 675 ntTSL 5 BASIC2.93□□□□□ -1.94
FOXA2Q9Y261 AP001972.3-202ENST00000603012 375 ntTSL 3 BASIC2.93□□□□□ -1.94
FOXA2Q9Y261 PRELID3BP8-201ENST00000604148 295 ntBASIC2.93□□□□□ -1.94
FOXA2Q9Y261 AC027045.1-201ENST00000609065 202 ntTSL 5 BASIC2.93□□□□□ -1.94
FOXA2Q9Y261 AC103710.1-201ENST00000610003 901 ntBASIC2.93□□□□□ -1.94
FOXA2Q9Y261 AL592295.2-201ENST00000612578 206 ntBASIC2.93□□□□□ -1.94
FOXA2Q9Y261 UBE2E2-207ENST00000628311 267 ntTSL 5 BASIC2.93□□□□□ -1.94
FOXA2Q9Y261 TEX41-280ENST00000629185 591 ntTSL 5 BASIC2.93□□□□□ -1.94
FOXA2Q9Y261 VNN1-201ENST00000367928 3106 ntAPPRIS P1 TSL 1 (best) BASIC2.93□□□□□ -1.94
FOXA2Q9Y261 FKTN-204ENST00000448551 1700 ntTSL 2 BASIC2.93□□□□□ -1.94
FOXA2Q9Y261 CCT4P2-201ENST00000233836 1548 ntBASIC2.93□□□□□ -1.94
FOXA2Q9Y261 GTPBP8-205ENST00000473129 1518 ntTSL 2 BASIC2.93□□□□□ -1.94
FOXA2Q9Y261 NDUFAF4-201ENST00000316149 2399 ntAPPRIS P1 TSL 1 (best) BASIC2.93□□□□□ -1.94
FOXA2Q9Y261 CASP1-210ENST00000528974 1402 ntTSL 2 BASIC2.93□□□□□ -1.94
FOXA2Q9Y261 GEN1-201ENST00000317402 9854 ntAPPRIS P1 TSL 2 BASIC2.93□□□□□ -1.94
FOXA2Q9Y261 AL021368.2-201ENST00000606125 5352 ntBASIC2.92□□□□□ -1.94
FOXA2Q9Y261 RNMT-206ENST00000589866 1879 ntAPPRIS P1 TSL 1 (best) BASIC2.92□□□□□ -1.94
Retrieved 100 of 98,524 protein–RNA pairs in 93 ms