Protein–RNA interactions for Protein: Q9HD42

CHMP1A, Charged multivesicular body protein 1a, humanhuman

Predicted RBP Predictions only

Length 196 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP1AQ9HD42 AL589872.1-201ENST00000426602 288 ntBASIC3.3□□□□□ -1.88
CHMP1AQ9HD42 AC008850.1-201ENST00000427546 362 ntBASIC3.3□□□□□ -1.88
CHMP1AQ9HD42 AC008067.1-203ENST00000430876 359 ntTSL 3 BASIC3.3□□□□□ -1.88
CHMP1AQ9HD42 HTR2A-AS1-201ENST00000430913 429 ntTSL 3 BASIC3.3□□□□□ -1.88
CHMP1AQ9HD42 AC010153.1-201ENST00000432862 727 ntBASIC3.3□□□□□ -1.88
CHMP1AQ9HD42 AL583835.2-201ENST00000435483 500 ntTSL 2 BASIC3.3□□□□□ -1.88
CHMP1AQ9HD42 MTCO1P19-201ENST00000443487 500 ntBASIC3.3□□□□□ -1.88
CHMP1AQ9HD42 MTND6P13-201ENST00000443510 523 ntBASIC3.3□□□□□ -1.88
CHMP1AQ9HD42 AL451164.2-201ENST00000445932 597 ntTSL 2 BASIC3.3□□□□□ -1.88
CHMP1AQ9HD42 AC099563.1-201ENST00000456086 418 ntBASIC3.3□□□□□ -1.88
CHMP1AQ9HD42 AC108059.3-201ENST00000456388 214 ntBASIC3.3□□□□□ -1.88
CHMP1AQ9HD42 RPL21P11-201ENST00000461458 483 ntBASIC3.3□□□□□ -1.88
CHMP1AQ9HD42 AL138787.2-202ENST00000479395 385 ntTSL 2 BASIC3.3□□□□□ -1.88
CHMP1AQ9HD42 AC105137.1-201ENST00000484355 562 ntBASIC3.3□□□□□ -1.88
CHMP1AQ9HD42 AL132838.2-201ENST00000492041 314 ntBASIC3.3□□□□□ -1.88
CHMP1AQ9HD42 ANKRD36B-207ENST00000497329 649 ntTSL 1 (best) BASIC3.3□□□□□ -1.88
CHMP1AQ9HD42 RPS27AP13-201ENST00000498403 237 ntBASIC3.3□□□□□ -1.88
CHMP1AQ9HD42 AC026784.1-201ENST00000507986 352 ntBASIC3.3□□□□□ -1.88
CHMP1AQ9HD42 AC016550.2-202ENST00000511940 581 ntTSL 2 BASIC3.3□□□□□ -1.88
CHMP1AQ9HD42 EGFLAM-AS2-202ENST00000514377 539 ntTSL 3 BASIC3.3□□□□□ -1.88
CHMP1AQ9HD42 APELA-204ENST00000515275 551 ntAPPRIS P1 TSL 3 BASIC3.3□□□□□ -1.88
CHMP1AQ9HD42 RPL12P22-201ENST00000519073 490 ntBASIC3.3□□□□□ -1.88
CHMP1AQ9HD42 RGS5-206ENST00000527988 373 ntTSL 1 (best) BASIC3.3□□□□□ -1.88
CHMP1AQ9HD42 SPTY2D1-AS1-203ENST00000542172 331 ntAPPRIS ALT2 TSL 1 (best) BASIC3.3□□□□□ -1.88
CHMP1AQ9HD42 GLYCAM1-202ENST00000546607 553 ntTSL 1 (best) BASIC3.3□□□□□ -1.88
CHMP1AQ9HD42 AP005205.1-201ENST00000563503 508 ntBASIC3.3□□□□□ -1.88
CHMP1AQ9HD42 AC090403.1-205ENST00000580883 516 ntTSL 2 BASIC3.3□□□□□ -1.88
CHMP1AQ9HD42 AC005771.1-201ENST00000585581 349 ntBASIC3.3□□□□□ -1.88
CHMP1AQ9HD42 AC012593.1-213ENST00000587255 510 ntTSL 5 BASIC3.3□□□□□ -1.88
CHMP1AQ9HD42 NBR2-204ENST00000587322 63 ntBASIC3.3□□□□□ -1.88
CHMP1AQ9HD42 AF038458.1-201ENST00000588406 262 ntBASIC3.3□□□□□ -1.88
CHMP1AQ9HD42 GALP-203ENST00000590002 150 ntTSL 1 (best) BASIC3.3□□□□□ -1.88
CHMP1AQ9HD42 AC234771.5-201ENST00000600161 514 ntBASIC3.3□□□□□ -1.88
CHMP1AQ9HD42 AC087752.4-201ENST00000605911 462 ntBASIC3.3□□□□□ -1.88
CHMP1AQ9HD42 AC245008.1-201ENST00000608123 476 ntBASIC3.3□□□□□ -1.88
CHMP1AQ9HD42 AP000254.1-201ENST00000609934 520 ntBASIC3.3□□□□□ -1.88
CHMP1AQ9HD42 AC091304.9-201ENST00000612091 226 ntBASIC3.3□□□□□ -1.88
CHMP1AQ9HD42 ANKRD36C-207ENST00000612359 650 ntTSL 1 (best) BASIC3.3□□□□□ -1.88
CHMP1AQ9HD42 RNVU1-4-201ENST00000612985 164 ntBASIC3.3□□□□□ -1.88
CHMP1AQ9HD42 uc_338.12-201ENST00000616344 181 ntBASIC3.3□□□□□ -1.88
CHMP1AQ9HD42 MIR7151-201ENST00000617477 60 ntBASIC3.3□□□□□ -1.88
CHMP1AQ9HD42 AC245427.9-201ENST00000633713 53 ntAPPRIS P1 BASIC3.3□□□□□ -1.88
CHMP1AQ9HD42 LPP-220ENST00000617246 18220 ntAPPRIS P1 TSL 1 (best) BASIC3.3□□□□□ -1.88
CHMP1AQ9HD42 OR4G2P-202ENST00000641004 1759 ntBASIC3.3□□□□□ -1.88
CHMP1AQ9HD42 IGSF11-AS1-201ENST00000477009 1604 ntTSL 2 BASIC3.3□□□□□ -1.88
CHMP1AQ9HD42 AC092104.1-201ENST00000497346 1441 ntBASIC3.29□□□□□ -1.88
CHMP1AQ9HD42 RNA5SP399-201ENST00000364003 117 ntBASIC3.29□□□□□ -1.88
CHMP1AQ9HD42 RNY3P13-201ENST00000365542 102 ntBASIC3.29□□□□□ -1.88
CHMP1AQ9HD42 CRISP3-203ENST00000371159 872 ntAPPRIS ALT2 TSL 5 BASIC3.29□□□□□ -1.88
CHMP1AQ9HD42 MIR184-201ENST00000384962 84 ntBASIC3.29□□□□□ -1.88
CHMP1AQ9HD42 U3.22-201ENST00000391120 215 ntBASIC3.29□□□□□ -1.88
CHMP1AQ9HD42 SNORA48.8-201ENST00000391324 134 ntBASIC3.29□□□□□ -1.88
CHMP1AQ9HD42 TANK-203ENST00000402568 878 ntTSL 5 BASIC3.29□□□□□ -1.88
CHMP1AQ9HD42 RPS3AP3-201ENST00000411933 242 ntBASIC3.29□□□□□ -1.88
CHMP1AQ9HD42 AC017079.2-201ENST00000416102 485 ntBASIC3.29□□□□□ -1.88
CHMP1AQ9HD42 RPL27AP8-201ENST00000424277 446 ntBASIC3.29□□□□□ -1.88
CHMP1AQ9HD42 AC002075.2-201ENST00000425207 252 ntBASIC3.29□□□□□ -1.88
CHMP1AQ9HD42 AL691449.1-201ENST00000426570 421 ntBASIC3.29□□□□□ -1.88
CHMP1AQ9HD42 BRWD1P3-201ENST00000428816 390 ntBASIC3.29□□□□□ -1.88
CHMP1AQ9HD42 LINC02095-201ENST00000430908 346 ntTSL 2 BASIC3.29□□□□□ -1.88
CHMP1AQ9HD42 AL117336.1-201ENST00000439198 380 ntTSL 2 BASIC3.29□□□□□ -1.88
CHMP1AQ9HD42 AL139383.1-203ENST00000445227 420 ntTSL 3 BASIC3.29□□□□□ -1.88
CHMP1AQ9HD42 MTND1P29-201ENST00000448112 647 ntBASIC3.29□□□□□ -1.88
CHMP1AQ9HD42 PDSS1P2-201ENST00000449397 678 ntBASIC3.29□□□□□ -1.88
CHMP1AQ9HD42 NANOGP10-201ENST00000453325 895 ntBASIC3.29□□□□□ -1.88
CHMP1AQ9HD42 AL359385.1-201ENST00000456509 365 ntBASIC3.29□□□□□ -1.88
CHMP1AQ9HD42 AL390961.3-201ENST00000458171 485 ntTSL 5 BASIC3.29□□□□□ -1.88
CHMP1AQ9HD42 RNU6-956P-201ENST00000458868 103 ntBASIC3.29□□□□□ -1.88
CHMP1AQ9HD42 SNORD42A-201ENST00000459584 64 ntBASIC3.29□□□□□ -1.88
CHMP1AQ9HD42 AL049714.1-201ENST00000466686 347 ntBASIC3.29□□□□□ -1.88
CHMP1AQ9HD42 RPS23P3-201ENST00000470993 430 ntBASIC3.29□□□□□ -1.88
CHMP1AQ9HD42 AC010631.1-201ENST00000474150 156 ntBASIC3.29□□□□□ -1.88
CHMP1AQ9HD42 MTND1P3-201ENST00000484956 952 ntBASIC3.29□□□□□ -1.88
CHMP1AQ9HD42 ATP6V1G3-204ENST00000489986 449 ntTSL 1 (best) BASIC3.29□□□□□ -1.88
CHMP1AQ9HD42 AP002075.1-201ENST00000505091 603 ntTSL 3 BASIC3.29□□□□□ -1.88
CHMP1AQ9HD42 AC114797.1-201ENST00000514003 728 ntBASIC3.29□□□□□ -1.88
CHMP1AQ9HD42 AC022447.1-201ENST00000515358 464 ntBASIC3.29□□□□□ -1.88
CHMP1AQ9HD42 RNU2-46P-201ENST00000517038 113 ntBASIC3.29□□□□□ -1.88
CHMP1AQ9HD42 AL138812.1-201ENST00000525573 471 ntTSL 3 BASIC3.29□□□□□ -1.88
CHMP1AQ9HD42 AC009643.1-201ENST00000532030 391 ntBASIC3.29□□□□□ -1.88
CHMP1AQ9HD42 AC087260.1-201ENST00000546118 401 ntTSL 5 BASIC3.29□□□□□ -1.88
CHMP1AQ9HD42 LINC02464-201ENST00000552060 368 ntTSL 2 BASIC3.29□□□□□ -1.88
CHMP1AQ9HD42 AL358335.2-201ENST00000555693 487 ntTSL 3 BASIC3.29□□□□□ -1.88
CHMP1AQ9HD42 AL121576.1-201ENST00000556055 276 ntBASIC3.29□□□□□ -1.88
CHMP1AQ9HD42 C1QBP-206ENST00000574444 901 ntTSL 3 BASIC3.29□□□□□ -1.88
CHMP1AQ9HD42 LINC01909-202ENST00000584919 815 ntTSL 3 BASIC3.29□□□□□ -1.88
CHMP1AQ9HD42 LINC01928-201ENST00000591029 504 ntTSL 3 BASIC3.29□□□□□ -1.88
CHMP1AQ9HD42 CKS1BP3-201ENST00000600888 237 ntBASIC3.29□□□□□ -1.88
CHMP1AQ9HD42 RN7SKP299-201ENST00000606679 301 ntBASIC3.29□□□□□ -1.88
CHMP1AQ9HD42 ACYP2-208ENST00000606865 674 ntTSL 5 BASIC3.29□□□□□ -1.88
CHMP1AQ9HD42 MUCL1-205ENST00000619042 243 ntAPPRIS ALT2 TSL 5 BASIC3.29□□□□□ -1.88
CHMP1AQ9HD42 MIR6730-201ENST00000622213 67 ntBASIC3.29□□□□□ -1.88
CHMP1AQ9HD42 SATB1-AS1-269ENST00000630766 591 ntTSL 5 BASIC3.29□□□□□ -1.88
CHMP1AQ9HD42 AP003171.2-202ENST00000634657 355 ntTSL 5 BASIC3.29□□□□□ -1.88
CHMP1AQ9HD42 LGI1-210ENST00000629035 2251 ntTSL 5 BASIC3.29□□□□□ -1.88
CHMP1AQ9HD42 ZNF807-201ENST00000328088 1707 ntBASIC3.29□□□□□ -1.88
CHMP1AQ9HD42 LCA5L-218ENST00000485895 2551 ntTSL 1 (best) BASIC3.29□□□□□ -1.88
CHMP1AQ9HD42 FOXP2-206ENST00000393491 6085 ntTSL 5 BASIC3.29□□□□□ -1.88
CHMP1AQ9HD42 FLG-AS1-205ENST00000445097 2857 ntTSL 1 (best) BASIC3.29□□□□□ -1.88
CHMP1AQ9HD42 CCDC30-212ENST00000507855 2445 ntAPPRIS ALT2 TSL 1 (best) BASIC3.29□□□□□ -1.88
Retrieved 100 of 98,524 protein–RNA pairs in 82.6 ms