Protein–RNA interactions for Protein: Q7Z6J8

UBE3D, E3 ubiquitin-protein ligase E3D, humanhuman

Predictions only

Length 389 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UBE3DQ7Z6J8 FOXP1-IT1-201ENST00000498714 3539 ntTSL 2 BASIC4.85□□□□□ -1.63
UBE3DQ7Z6J8 PCDH15-215ENST00000409834 5401 ntTSL 5 BASIC4.85□□□□□ -1.63
UBE3DQ7Z6J8 DNAH5-201ENST00000265104 15633 ntAPPRIS P1 TSL 1 (best) BASIC4.84□□□□□ -1.63
UBE3DQ7Z6J8 ZNF525-202ENST00000474037 3890 ntAPPRIS P1 TSL 5 BASIC4.84□□□□□ -1.63
UBE3DQ7Z6J8 AC107027.3-201ENST00000565095 3473 ntBASIC4.84□□□□□ -1.63
UBE3DQ7Z6J8 LINC02302-201ENST00000556405 2904 ntTSL 2 BASIC4.84□□□□□ -1.63
UBE3DQ7Z6J8 NBPF10-201ENST00000583866 13042 ntAPPRIS P1 TSL 5 BASIC4.84□□□□□ -1.63
UBE3DQ7Z6J8 FBXL13-207ENST00000455112 2274 ntTSL 1 (best) BASIC4.84□□□□□ -1.63
UBE3DQ7Z6J8 CDC27P3-201ENST00000635418 1910 ntBASIC4.84□□□□□ -1.63
UBE3DQ7Z6J8 PRG4-206ENST00000635041 4915 ntAPPRIS ALT2 TSL 5 BASIC4.84□□□□□ -1.63
UBE3DQ7Z6J8 AC104118.1-201ENST00000607625 1589 ntBASIC4.84□□□□□ -1.63
UBE3DQ7Z6J8 CUL2-201ENST00000374746 3903 ntTSL 5 BASIC4.84□□□□□ -1.63
UBE3DQ7Z6J8 OR4N5-201ENST00000333629 927 ntAPPRIS P1 BASIC4.84□□□□□ -1.63
UBE3DQ7Z6J8 RNU6-989P-201ENST00000362756 107 ntBASIC4.84□□□□□ -1.63
UBE3DQ7Z6J8 RNU6-238P-201ENST00000363313 106 ntBASIC4.84□□□□□ -1.63
UBE3DQ7Z6J8 OR14A2-201ENST00000366485 945 ntAPPRIS P1 BASIC4.84□□□□□ -1.63
UBE3DQ7Z6J8 OR51A4-201ENST00000380373 1002 ntAPPRIS P1 BASIC4.84□□□□□ -1.63
UBE3DQ7Z6J8 RNU6-823P-201ENST00000391042 103 ntBASIC4.84□□□□□ -1.63
UBE3DQ7Z6J8 U3.36-201ENST00000408418 213 ntBASIC4.84□□□□□ -1.63
UBE3DQ7Z6J8 RNU6ATAC21P-201ENST00000408656 126 ntBASIC4.84□□□□□ -1.63
UBE3DQ7Z6J8 AL160162.1-202ENST00000417654 244 ntTSL 3 BASIC4.84□□□□□ -1.63
UBE3DQ7Z6J8 LAMTOR3P1-201ENST00000428620 370 ntBASIC4.84□□□□□ -1.63
UBE3DQ7Z6J8 COX6CP13-201ENST00000428703 226 ntBASIC4.84□□□□□ -1.63
UBE3DQ7Z6J8 AL139397.1-201ENST00000430456 644 ntTSL 2 BASIC4.84□□□□□ -1.63
UBE3DQ7Z6J8 RHOT1P3-201ENST00000436571 331 ntBASIC4.84□□□□□ -1.63
UBE3DQ7Z6J8 AC011816.1-201ENST00000441346 546 ntBASIC4.84□□□□□ -1.63
UBE3DQ7Z6J8 RPS24P13-201ENST00000442520 397 ntBASIC4.84□□□□□ -1.63
UBE3DQ7Z6J8 AL121871.1-201ENST00000443413 436 ntBASIC4.84□□□□□ -1.63
UBE3DQ7Z6J8 NEFMP1-201ENST00000443423 1006 ntBASIC4.84□□□□□ -1.63
UBE3DQ7Z6J8 KNOP1P3-201ENST00000446933 426 ntBASIC4.84□□□□□ -1.63
UBE3DQ7Z6J8 RPL7L1P1-201ENST00000448259 785 ntBASIC4.84□□□□□ -1.63
UBE3DQ7Z6J8 AL161630.1-201ENST00000450938 1299 ntTSL 1 (best) BASIC4.84□□□□□ -1.63
UBE3DQ7Z6J8 LINC02540-201ENST00000455554 570 ntTSL 3 BASIC4.84□□□□□ -1.63
UBE3DQ7Z6J8 RNU7-138P-201ENST00000459479 64 ntBASIC4.84□□□□□ -1.63
UBE3DQ7Z6J8 RN7SL443P-201ENST00000464331 290 ntBASIC4.84□□□□□ -1.63
UBE3DQ7Z6J8 AC005532.2-201ENST00000467154 373 ntBASIC4.84□□□□□ -1.63
UBE3DQ7Z6J8 AC097484.1-201ENST00000471148 389 ntBASIC4.84□□□□□ -1.63
UBE3DQ7Z6J8 RPS18P6-201ENST00000476880 458 ntBASIC4.84□□□□□ -1.63
UBE3DQ7Z6J8 AC084198.1-201ENST00000477747 402 ntBASIC4.84□□□□□ -1.63
UBE3DQ7Z6J8 AC106894.1-201ENST00000511735 451 ntTSL 5 BASIC4.84□□□□□ -1.63
UBE3DQ7Z6J8 AC069113.1-201ENST00000517763 267 ntBASIC4.84□□□□□ -1.63
UBE3DQ7Z6J8 AC025437.5-201ENST00000522769 314 ntTSL 3 BASIC4.84□□□□□ -1.63
UBE3DQ7Z6J8 AC022882.1-201ENST00000532142 501 ntBASIC4.84□□□□□ -1.63
UBE3DQ7Z6J8 SNHG1-204ENST00000537068 629 ntTSL 5 BASIC4.84□□□□□ -1.63
UBE3DQ7Z6J8 AC018904.1-201ENST00000560594 542 ntTSL 3 BASIC4.84□□□□□ -1.63
UBE3DQ7Z6J8 HMGN2P28-201ENST00000606102 262 ntBASIC4.84□□□□□ -1.63
UBE3DQ7Z6J8 LDHA-225ENST00000625635 141 ntTSL 5 BASIC4.84□□□□□ -1.63
UBE3DQ7Z6J8 SNAP23-222ENST00000626061 237 ntTSL 5 BASIC4.84□□□□□ -1.63
UBE3DQ7Z6J8 SNAP23-223ENST00000627440 210 ntTSL 5 BASIC4.84□□□□□ -1.63
UBE3DQ7Z6J8 ZNF836-204ENST00000597252 3209 ntAPPRIS P2 TSL 2 BASIC4.84□□□□□ -1.63
UBE3DQ7Z6J8 AL033384.1-202ENST00000431554 3104 ntTSL 1 (best) BASIC4.84□□□□□ -1.63
UBE3DQ7Z6J8 STK31-205ENST00000433467 3085 ntTSL 2 BASIC4.84□□□□□ -1.63
UBE3DQ7Z6J8 SCN2A-201ENST00000283256 8660 ntAPPRIS P5 TSL 1 (best) BASIC4.84□□□□□ -1.63
UBE3DQ7Z6J8 NDUFA5-207ENST00000471770 5608 ntTSL 1 (best) BASIC4.84□□□□□ -1.64
UBE3DQ7Z6J8 SULF1-204ENST00000458141 5551 ntAPPRIS P1 TSL 1 (best) BASIC4.84□□□□□ -1.64
UBE3DQ7Z6J8 SLC26A7-201ENST00000276609 5263 ntAPPRIS P1 TSL 1 (best) BASIC4.84□□□□□ -1.64
UBE3DQ7Z6J8 DNAH7-202ENST00000409063 1845 ntTSL 1 (best) BASIC4.83□□□□□ -1.64
UBE3DQ7Z6J8 HERC4-205ENST00000412272 4211 ntTSL 1 (best) BASIC4.83□□□□□ -1.64
UBE3DQ7Z6J8 D21S2088E-201ENST00000262354 1725 ntTSL 1 (best) BASIC4.83□□□□□ -1.64
UBE3DQ7Z6J8 CDK14-203ENST00000406263 5163 ntAPPRIS ALT2 TSL 1 (best) BASIC4.83□□□□□ -1.64
UBE3DQ7Z6J8 AC073136.1-201ENST00000449426 2884 ntBASIC4.83□□□□□ -1.64
UBE3DQ7Z6J8 FZD6-205ENST00000522566 3719 ntAPPRIS P1 TSL 1 (best) BASIC4.83□□□□□ -1.64
UBE3DQ7Z6J8 RUFY3-201ENST00000226328 4233 ntTSL 1 (best) BASIC4.83□□□□□ -1.64
UBE3DQ7Z6J8 Y_RNA.2-201ENST00000362330 96 ntBASIC4.83□□□□□ -1.64
UBE3DQ7Z6J8 RNU6-874P-201ENST00000362390 105 ntBASIC4.83□□□□□ -1.64
UBE3DQ7Z6J8 TMLHE-202ENST00000369439 1248 ntTSL 1 (best) BASIC4.83□□□□□ -1.64
UBE3DQ7Z6J8 Y_RNA.424-201ENST00000384063 103 ntBASIC4.83□□□□□ -1.64
UBE3DQ7Z6J8 RNU1-106P-201ENST00000384382 164 ntBASIC4.83□□□□□ -1.64
UBE3DQ7Z6J8 MIR1178-201ENST00000408396 91 ntBASIC4.83□□□□□ -1.64
UBE3DQ7Z6J8 RPL9P9-201ENST00000418824 636 ntTSL 2 BASIC4.83□□□□□ -1.64
UBE3DQ7Z6J8 AC243428.1-201ENST00000421099 264 ntBASIC4.83□□□□□ -1.64
UBE3DQ7Z6J8 EIF4EP1-201ENST00000422311 642 ntBASIC4.83□□□□□ -1.64
UBE3DQ7Z6J8 AL391219.1-201ENST00000422570 483 ntBASIC4.83□□□□□ -1.64
UBE3DQ7Z6J8 AL022396.1-201ENST00000427011 386 ntTSL 3 BASIC4.83□□□□□ -1.64
UBE3DQ7Z6J8 RPS27AP12-201ENST00000429552 465 ntBASIC4.83□□□□□ -1.64
UBE3DQ7Z6J8 PSMA2P3-201ENST00000429685 675 ntBASIC4.83□□□□□ -1.64
UBE3DQ7Z6J8 AC097713.2-201ENST00000430199 356 ntBASIC4.83□□□□□ -1.64
UBE3DQ7Z6J8 USP9YP30-201ENST00000430729 455 ntBASIC4.83□□□□□ -1.64
UBE3DQ7Z6J8 AL353689.2-201ENST00000433837 440 ntTSL 3 BASIC4.83□□□□□ -1.64
UBE3DQ7Z6J8 AL450992.2-201ENST00000434182 506 ntTSL 5 BASIC4.83□□□□□ -1.64
UBE3DQ7Z6J8 AC004869.2-201ENST00000436501 229 ntTSL 3 BASIC4.83□□□□□ -1.64
UBE3DQ7Z6J8 AC012070.1-201ENST00000442062 427 ntTSL 3 BASIC4.83□□□□□ -1.64
UBE3DQ7Z6J8 AC087884.1-201ENST00000469738 328 ntBASIC4.83□□□□□ -1.64
UBE3DQ7Z6J8 RPS23P3-201ENST00000470993 430 ntBASIC4.83□□□□□ -1.64
UBE3DQ7Z6J8 AC020651.1-201ENST00000490324 360 ntTSL 3 BASIC4.83□□□□□ -1.64
UBE3DQ7Z6J8 TM4SF1-AS1-202ENST00000496491 754 ntTSL 2 BASIC4.83□□□□□ -1.64
UBE3DQ7Z6J8 Y_RNA.689-201ENST00000516589 107 ntBASIC4.83□□□□□ -1.64
UBE3DQ7Z6J8 RNU4-77P-201ENST00000516692 156 ntBASIC4.83□□□□□ -1.64
UBE3DQ7Z6J8 AC127894.1-201ENST00000548266 851 ntTSL 3 BASIC4.83□□□□□ -1.64
UBE3DQ7Z6J8 AP005059.1-201ENST00000578391 456 ntTSL 2 BASIC4.83□□□□□ -1.64
UBE3DQ7Z6J8 AC011447.4-201ENST00000587562 111 ntBASIC4.83□□□□□ -1.64
UBE3DQ7Z6J8 LINC00649-204ENST00000593977 640 ntTSL 5 BASIC4.83□□□□□ -1.64
UBE3DQ7Z6J8 U2.1-201ENST00000618978 145 ntBASIC4.83□□□□□ -1.64
UBE3DQ7Z6J8 AC243312.2-201ENST00000623340 601 ntBASIC4.83□□□□□ -1.64
UBE3DQ7Z6J8 CDK15-204ENST00000450471 3659 ntAPPRIS ALT1 TSL 1 (best) BASIC4.83□□□□□ -1.64
UBE3DQ7Z6J8 VWC2L-202ENST00000427124 4480 ntTSL 1 (best) BASIC4.83□□□□□ -1.64
UBE3DQ7Z6J8 AC016705.1-201ENST00000548231 1891 ntTSL 5 BASIC4.83□□□□□ -1.64
UBE3DQ7Z6J8 ZNF334-203ENST00000593880 2635 ntTSL 1 (best) BASIC4.83□□□□□ -1.64
UBE3DQ7Z6J8 CASP10-204ENST00000346817 3926 ntAPPRIS ALT2 TSL 5 BASIC4.83□□□□□ -1.64
UBE3DQ7Z6J8 SMC2-203ENST00000374793 5909 ntAPPRIS P1 TSL 1 (best) BASIC4.83□□□□□ -1.64
Retrieved 100 of 98,524 protein–RNA pairs in 206.6 ms