Protein–RNA interactions for Protein: Q7Z6J0

SH3RF1, E3 ubiquitin-protein ligase SH3RF1, humanhuman

Predictions only

Length 888 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SH3RF1Q7Z6J0 HDAC9-203ENST00000406072 4102 ntTSL 5 BASIC6.04□□□□□ -1.44
SH3RF1Q7Z6J0 DDX3Y-201ENST00000336079 4445 ntAPPRIS P1 TSL 1 (best) BASIC6.04□□□□□ -1.44
SH3RF1Q7Z6J0 KIAA1328-201ENST00000280020 4853 ntAPPRIS P1 TSL 1 (best) BASIC6.04□□□□□ -1.44
SH3RF1Q7Z6J0 OR6Y1-202ENST00000641282 3702 ntAPPRIS P1 BASIC6.04□□□□□ -1.44
SH3RF1Q7Z6J0 HEATR1-203ENST00000366582 8447 ntAPPRIS P1 TSL 5 BASIC6.04□□□□□ -1.44
SH3RF1Q7Z6J0 PDS5B-201ENST00000315596 7497 ntAPPRIS P1 TSL 1 (best) BASIC6.04□□□□□ -1.44
SH3RF1Q7Z6J0 PTPRT-201ENST00000356100 12480 ntAPPRIS ALT2 TSL 5 BASIC6.04□□□□□ -1.44
SH3RF1Q7Z6J0 PTPRT-202ENST00000373184 12483 ntAPPRIS ALT2 TSL 5 BASIC6.04□□□□□ -1.44
SH3RF1Q7Z6J0 PTPRT-203ENST00000373187 12453 ntAPPRIS P3 TSL 1 (best) BASIC6.04□□□□□ -1.44
SH3RF1Q7Z6J0 IBTK-206ENST00000503631 3560 ntTSL 1 (best) BASIC6.03□□□□□ -1.44
SH3RF1Q7Z6J0 PPFIBP1-201ENST00000228425 5933 ntAPPRIS P1 TSL 1 (best) BASIC6.03□□□□□ -1.44
SH3RF1Q7Z6J0 DDX10P1-201ENST00000448545 1933 ntBASIC6.03□□□□□ -1.44
SH3RF1Q7Z6J0 BBX-201ENST00000325805 3517 ntAPPRIS ALT2 TSL 1 (best) BASIC6.03□□□□□ -1.44
SH3RF1Q7Z6J0 MYO3B-202ENST00000408978 5529 ntAPPRIS P3 TSL 1 (best) BASIC6.03□□□□□ -1.44
SH3RF1Q7Z6J0 GTDC1-220ENST00000618778 2317 ntTSL 5 BASIC6.03□□□□□ -1.44
SH3RF1Q7Z6J0 AC099329.2-203ENST00000471537 3605 ntTSL 1 (best) BASIC6.03□□□□□ -1.44
SH3RF1Q7Z6J0 DYNC1I2-201ENST00000340296 2589 ntAPPRIS P4 TSL 1 (best) BASIC6.03□□□□□ -1.44
SH3RF1Q7Z6J0 AC138393.1-203ENST00000327086 343 ntBASIC6.03□□□□□ -1.44
SH3RF1Q7Z6J0 FHIT-201ENST00000341848 174 ntTSL 3 BASIC6.03□□□□□ -1.44
SH3RF1Q7Z6J0 MT-CO2-201ENST00000361739 684 ntAPPRIS P1 BASIC6.03□□□□□ -1.44
SH3RF1Q7Z6J0 SNORA17.1-201ENST00000362945 126 ntBASIC6.03□□□□□ -1.44
SH3RF1Q7Z6J0 RNY3P11-201ENST00000364153 102 ntBASIC6.03□□□□□ -1.44
SH3RF1Q7Z6J0 Y_RNA.480-201ENST00000384364 102 ntBASIC6.03□□□□□ -1.44
SH3RF1Q7Z6J0 RNU6-790P-201ENST00000384479 105 ntBASIC6.03□□□□□ -1.44
SH3RF1Q7Z6J0 RNU6-1081P-201ENST00000384537 107 ntBASIC6.03□□□□□ -1.44
SH3RF1Q7Z6J0 COX5BP7-201ENST00000414780 274 ntBASIC6.03□□□□□ -1.44
SH3RF1Q7Z6J0 AC245028.1-201ENST00000423259 256 ntBASIC6.03□□□□□ -1.44
SH3RF1Q7Z6J0 VTI1BP4-201ENST00000427516 527 ntBASIC6.03□□□□□ -1.44
SH3RF1Q7Z6J0 C4BPAP2-201ENST00000428434 478 ntBASIC6.03□□□□□ -1.44
SH3RF1Q7Z6J0 AF230666.1-201ENST00000429151 786 ntTSL 2 BASIC6.03□□□□□ -1.44
SH3RF1Q7Z6J0 LINC02095-201ENST00000430908 346 ntTSL 2 BASIC6.03□□□□□ -1.44
SH3RF1Q7Z6J0 AL133396.1-201ENST00000432048 687 ntBASIC6.03□□□□□ -1.44
SH3RF1Q7Z6J0 AC004383.1-201ENST00000438135 289 ntBASIC6.03□□□□□ -1.44
SH3RF1Q7Z6J0 AC008264.1-201ENST00000447612 367 ntBASIC6.03□□□□□ -1.44
SH3RF1Q7Z6J0 AC010655.1-201ENST00000449336 292 ntBASIC6.03□□□□□ -1.44
SH3RF1Q7Z6J0 AL139109.1-201ENST00000455491 297 ntBASIC6.03□□□□□ -1.44
SH3RF1Q7Z6J0 AL353152.1-201ENST00000455973 470 ntTSL 5 BASIC6.03□□□□□ -1.44
SH3RF1Q7Z6J0 AC009127.1-201ENST00000467090 155 ntBASIC6.03□□□□□ -1.44
SH3RF1Q7Z6J0 AC090602.1-201ENST00000469695 252 ntBASIC6.03□□□□□ -1.44
SH3RF1Q7Z6J0 AC010255.1-201ENST00000504829 731 ntTSL 5 BASIC6.03□□□□□ -1.44
SH3RF1Q7Z6J0 Y_RNA.689-201ENST00000516589 107 ntBASIC6.03□□□□□ -1.44
SH3RF1Q7Z6J0 RNA5SP230-201ENST00000517039 122 ntBASIC6.03□□□□□ -1.44
SH3RF1Q7Z6J0 AC025437.5-201ENST00000522769 314 ntTSL 3 BASIC6.03□□□□□ -1.44
SH3RF1Q7Z6J0 AP000859.1-201ENST00000525536 307 ntBASIC6.03□□□□□ -1.44
SH3RF1Q7Z6J0 AC078889.1-201ENST00000536412 523 ntTSL 2 BASIC6.03□□□□□ -1.44
SH3RF1Q7Z6J0 PCED1B-AS1-210ENST00000552975 378 ntTSL 2 BASIC6.03□□□□□ -1.44
SH3RF1Q7Z6J0 hsa-mir-548d-2.1-201ENST00000582790 97 ntBASIC6.03□□□□□ -1.44
SH3RF1Q7Z6J0 ELOCP5-201ENST00000604924 333 ntBASIC6.03□□□□□ -1.44
SH3RF1Q7Z6J0 AC064801.1-201ENST00000612025 407 ntBASIC6.03□□□□□ -1.44
SH3RF1Q7Z6J0 MIR6839-201ENST00000620425 113 ntBASIC6.03□□□□□ -1.44
SH3RF1Q7Z6J0 FP236241.1-201ENST00000623374 7632 ntTSL 1 (best) BASIC6.03□□□□□ -1.44
SH3RF1Q7Z6J0 CU633967.1-211ENST00000624444 7628 ntTSL 1 (best) BASIC6.03□□□□□ -1.44
SH3RF1Q7Z6J0 PRR14L-201ENST00000327423 10826 ntAPPRIS P2 TSL 5 BASIC6.03□□□□□ -1.44
SH3RF1Q7Z6J0 SCN2A-202ENST00000375427 8553 ntAPPRIS ALT1 TSL 5 BASIC6.03□□□□□ -1.44
SH3RF1Q7Z6J0 AL353796.1-201ENST00000561542 3241 ntBASIC6.03□□□□□ -1.44
SH3RF1Q7Z6J0 ZNF546-201ENST00000347077 7987 ntAPPRIS P3 TSL 1 (best) BASIC6.03□□□□□ -1.44
SH3RF1Q7Z6J0 SLCO1B7-201ENST00000421593 1923 ntAPPRIS P1 TSL 1 (best) BASIC6.03□□□□□ -1.44
SH3RF1Q7Z6J0 PPIG-207ENST00000448752 2498 ntAPPRIS P1 TSL 1 (best) BASIC6.03□□□□□ -1.44
SH3RF1Q7Z6J0 FBXO38-218ENST00000513826 3585 ntTSL 1 (best) BASIC6.03□□□□□ -1.44
SH3RF1Q7Z6J0 DEUP1-202ENST00000525646 1920 ntTSL 1 (best) BASIC6.03□□□□□ -1.44
SH3RF1Q7Z6J0 BCORP1-203ENST00000513194 5093 ntBASIC6.03□□□□□ -1.44
SH3RF1Q7Z6J0 TTC37-201ENST00000358746 5706 ntAPPRIS P1 TSL 1 (best) BASIC6.03□□□□□ -1.44
SH3RF1Q7Z6J0 TRRAP-204ENST00000446306 12492 ntAPPRIS ALT2 TSL 5 BASIC6.03□□□□□ -1.44
SH3RF1Q7Z6J0 GPR1-201ENST00000407325 2295 ntAPPRIS P1 TSL 1 (best) BASIC6.02□□□□□ -1.44
SH3RF1Q7Z6J0 ITCH-201ENST00000262650 3089 ntTSL 1 (best) BASIC6.02□□□□□ -1.44
SH3RF1Q7Z6J0 ERVW-1-201ENST00000493463 2925 ntAPPRIS P1 BASIC6.02□□□□□ -1.45
SH3RF1Q7Z6J0 MYB-239ENST00000534121 2238 ntTSL 1 (best) BASIC6.02□□□□□ -1.45
SH3RF1Q7Z6J0 NDUFA5-207ENST00000471770 5608 ntTSL 1 (best) BASIC6.02□□□□□ -1.45
SH3RF1Q7Z6J0 TCF4-284ENST00000637169 7553 ntTSL 5 BASIC6.02□□□□□ -1.45
SH3RF1Q7Z6J0 OR10A6-204ENST00000642108 6104 ntAPPRIS P1 BASIC6.02□□□□□ -1.45
SH3RF1Q7Z6J0 SCRG1-201ENST00000296506 4420 ntAPPRIS P1 TSL 1 (best) BASIC6.02□□□□□ -1.45
SH3RF1Q7Z6J0 TRAPPC13-201ENST00000231526 2715 ntAPPRIS ALT1 TSL 5 BASIC6.02□□□□□ -1.45
SH3RF1Q7Z6J0 SP110-202ENST00000258382 2080 ntTSL 1 (best) BASIC6.02□□□□□ -1.45
SH3RF1Q7Z6J0 ZNF493-203ENST00000392288 5023 ntAPPRIS P1 TSL 1 (best) BASIC6.02□□□□□ -1.45
SH3RF1Q7Z6J0 CRISP1-202ENST00000335847 1911 ntAPPRIS P1 TSL 1 (best) BASIC6.02□□□□□ -1.45
SH3RF1Q7Z6J0 Y_RNA.506-201ENST00000384494 102 ntBASIC6.02□□□□□ -1.45
SH3RF1Q7Z6J0 MOBP-203ENST00000415443 577 ntAPPRIS ALT2 TSL 4 BASIC6.02□□□□□ -1.45
SH3RF1Q7Z6J0 TRAPPC2P5-201ENST00000426293 308 ntBASIC6.02□□□□□ -1.45
SH3RF1Q7Z6J0 GSTM5P1-201ENST00000434751 660 ntBASIC6.02□□□□□ -1.45
SH3RF1Q7Z6J0 AC092647.2-201ENST00000452998 253 ntBASIC6.02□□□□□ -1.45
SH3RF1Q7Z6J0 AC112229.2-201ENST00000456683 476 ntTSL 5 BASIC6.02□□□□□ -1.45
SH3RF1Q7Z6J0 AC092754.1-201ENST00000472975 479 ntBASIC6.02□□□□□ -1.45
SH3RF1Q7Z6J0 C10orf128-207ENST00000474718 614 ntAPPRIS P3 TSL 1 (best) BASIC6.02□□□□□ -1.45
SH3RF1Q7Z6J0 AC012123.2-201ENST00000485809 248 ntBASIC6.02□□□□□ -1.45
SH3RF1Q7Z6J0 RPS24P16-201ENST00000497294 392 ntBASIC6.02□□□□□ -1.45
SH3RF1Q7Z6J0 FTH1P24-201ENST00000503502 462 ntBASIC6.02□□□□□ -1.45
SH3RF1Q7Z6J0 FBXO3-AS1-202ENST00000533046 386 ntTSL 3 BASIC6.02□□□□□ -1.45
SH3RF1Q7Z6J0 AC128707.1-201ENST00000552230 494 ntTSL 3 BASIC6.02□□□□□ -1.45
SH3RF1Q7Z6J0 AC130289.1-201ENST00000577321 73 ntBASIC6.02□□□□□ -1.45
SH3RF1Q7Z6J0 MSMB-201ENST00000581478 386 ntTSL 1 (best) BASIC6.02□□□□□ -1.45
SH3RF1Q7Z6J0 MIR4660-201ENST00000583549 74 ntBASIC6.02□□□□□ -1.45
SH3RF1Q7Z6J0 AC026620.1-201ENST00000584815 326 ntTSL 3 BASIC6.02□□□□□ -1.45
SH3RF1Q7Z6J0 AC087385.3-201ENST00000620477 187 ntBASIC6.02□□□□□ -1.45
SH3RF1Q7Z6J0 LAMTOR5-AS1-244ENST00000629484 780 ntTSL 5 BASIC6.02□□□□□ -1.45
SH3RF1Q7Z6J0 AC073869.10-201ENST00000642016 354 ntBASIC6.02□□□□□ -1.45
SH3RF1Q7Z6J0 RNF19A-205ENST00000519449 4330 ntAPPRIS P1 TSL 1 (best) BASIC6.02□□□□□ -1.45
SH3RF1Q7Z6J0 INTS6P1-201ENST00000504674 2530 ntBASIC6.02□□□□□ -1.45
SH3RF1Q7Z6J0 AP005212.5-201ENST00000577614 3505 ntTSL 5 BASIC6.02□□□□□ -1.45
SH3RF1Q7Z6J0 ZNF567-203ENST00000585696 3734 ntTSL 1 (best) BASIC6.02□□□□□ -1.45
SH3RF1Q7Z6J0 HEPHL1-201ENST00000315765 5345 ntAPPRIS P1 TSL 5 BASIC6.02□□□□□ -1.45
Retrieved 100 of 98,524 protein–RNA pairs in 97.8 ms