Protein–RNA interactions for Protein: Q70EL1

USP54, Inactive ubiquitin carboxyl-terminal hydrolase 54, humanhuman

Predictions only

Length 1,684 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP54Q70EL1 ANKAR-201ENST00000313581 4391 ntAPPRIS P1 TSL 1 (best) BASIC2.3□□□□□ -2.04
USP54Q70EL1 DEFB106B-201ENST00000335479 316 ntAPPRIS P1 TSL 1 (best) BASIC2.3□□□□□ -2.04
USP54Q70EL1 RNU4-13P-201ENST00000364019 141 ntBASIC2.3□□□□□ -2.04
USP54Q70EL1 AL121972.1-201ENST00000402023 252 ntBASIC2.3□□□□□ -2.04
USP54Q70EL1 RPL17P12-201ENST00000413391 526 ntBASIC2.3□□□□□ -2.04
USP54Q70EL1 AL645937.4-201ENST00000419702 389 ntTSL 2 BASIC2.3□□□□□ -2.04
USP54Q70EL1 MTCO2P32-201ENST00000514865 403 ntBASIC2.3□□□□□ -2.04
USP54Q70EL1 RNU1-40P-201ENST00000516816 164 ntBASIC2.3□□□□□ -2.04
USP54Q70EL1 RNU1-97P-201ENST00000516872 164 ntBASIC2.3□□□□□ -2.04
USP54Q70EL1 AC104012.1-201ENST00000517848 719 ntTSL 3 BASIC2.3□□□□□ -2.04
USP54Q70EL1 AC108471.2-204ENST00000526807 784 ntTSL 5 BASIC2.3□□□□□ -2.04
USP54Q70EL1 AC090092.1-201ENST00000530576 510 ntTSL 2 BASIC2.3□□□□□ -2.04
USP54Q70EL1 SETP2-201ENST00000553886 926 ntBASIC2.3□□□□□ -2.04
USP54Q70EL1 AC016987.2-201ENST00000560696 351 ntTSL 3 BASIC2.3□□□□□ -2.04
USP54Q70EL1 AC091563.1-202ENST00000574086 522 ntTSL 5 BASIC2.3□□□□□ -2.04
USP54Q70EL1 MIR3690-201ENST00000580266 75 ntBASIC2.3□□□□□ -2.04
USP54Q70EL1 BX248123.2-201ENST00000606318 124 ntBASIC2.3□□□□□ -2.04
USP54Q70EL1 AC012360.2-201ENST00000609349 391 ntBASIC2.3□□□□□ -2.04
USP54Q70EL1 N4BP2L2-211ENST00000504114 2513 ntTSL 5 BASIC2.3□□□□□ -2.04
USP54Q70EL1 NBPF20-202ENST00000392971 18450 ntAPPRIS P2 TSL 5 BASIC2.3□□□□□ -2.04
USP54Q70EL1 MBNL3-212ENST00000538204 11294 ntTSL 1 (best) BASIC2.29□□□□□ -2.04
USP54Q70EL1 MME-216ENST00000615825 5523 ntAPPRIS P1 TSL 1 (best) BASIC2.29□□□□□ -2.04
USP54Q70EL1 RNU6-666P-201ENST00000363499 107 ntBASIC2.29□□□□□ -2.04
USP54Q70EL1 RNA5SP27-201ENST00000363839 119 ntBASIC2.29□□□□□ -2.04
USP54Q70EL1 MIR320B1-201ENST00000390209 79 ntBASIC2.29□□□□□ -2.04
USP54Q70EL1 WARS2P1-201ENST00000429678 537 ntBASIC2.29□□□□□ -2.04
USP54Q70EL1 LINC01878-201ENST00000434559 769 ntTSL 3 BASIC2.29□□□□□ -2.04
USP54Q70EL1 AL591721.1-201ENST00000439849 751 ntTSL 3 BASIC2.29□□□□□ -2.04
USP54Q70EL1 MTCO1P42-201ENST00000457379 726 ntBASIC2.29□□□□□ -2.04
USP54Q70EL1 AC068781.1-201ENST00000488231 618 ntBASIC2.29□□□□□ -2.04
USP54Q70EL1 LINC02049-201ENST00000490647 747 ntTSL 1 (best) BASIC2.29□□□□□ -2.04
USP54Q70EL1 RPL30P11-201ENST00000495304 339 ntBASIC2.29□□□□□ -2.04
USP54Q70EL1 AC016687.2-201ENST00000504795 541 ntTSL 5 BASIC2.29□□□□□ -2.04
USP54Q70EL1 AC090753.1-201ENST00000522087 331 ntTSL 3 BASIC2.29□□□□□ -2.04
USP54Q70EL1 AL358333.2-201ENST00000556834 529 ntTSL 5 BASIC2.29□□□□□ -2.04
USP54Q70EL1 MIR4496-201ENST00000635896 61 ntBASIC2.29□□□□□ -2.04
USP54Q70EL1 MCMDC2-201ENST00000313616 2043 ntTSL 2 BASIC2.29□□□□□ -2.04
USP54Q70EL1 MTND4P1-201ENST00000457501 1466 ntBASIC2.29□□□□□ -2.04
USP54Q70EL1 FSD1L-201ENST00000374707 7062 ntTSL 1 (best) BASIC2.29□□□□□ -2.04
USP54Q70EL1 CXCL11-201ENST00000306621 1606 ntAPPRIS P1 TSL 1 (best) BASIC2.29□□□□□ -2.04
USP54Q70EL1 AC027514.1-201ENST00000588561 1603 ntBASIC2.29□□□□□ -2.04
USP54Q70EL1 MTND4P34-201ENST00000572715 1371 ntBASIC2.29□□□□□ -2.04
USP54Q70EL1 SEL1L2-201ENST00000284951 2224 ntAPPRIS P1 TSL 5 BASIC2.29□□□□□ -2.04
USP54Q70EL1 RNU2-71P-201ENST00000411395 189 ntBASIC2.28□□□□□ -2.04
USP54Q70EL1 AL078645.1-201ENST00000414377 423 ntTSL 3 BASIC2.28□□□□□ -2.04
USP54Q70EL1 AL136369.1-201ENST00000437825 244 ntTSL 5 BASIC2.28□□□□□ -2.04
USP54Q70EL1 MTND2P8-201ENST00000450555 1025 ntBASIC2.28□□□□□ -2.04
USP54Q70EL1 AC099520.1-208ENST00000518276 472 ntTSL 3 BASIC2.28□□□□□ -2.04
USP54Q70EL1 AC092746.1-201ENST00000542819 562 ntTSL 4 BASIC2.28□□□□□ -2.04
USP54Q70EL1 AC055764.2-201ENST00000610089 670 ntBASIC2.28□□□□□ -2.04
USP54Q70EL1 MUCL1-205ENST00000619042 243 ntAPPRIS ALT2 TSL 5 BASIC2.28□□□□□ -2.04
USP54Q70EL1 FO624990.1-201ENST00000636373 85 ntBASIC2.28□□□□□ -2.04
USP54Q70EL1 POLK-204ENST00000504026 1484 ntTSL 1 (best) BASIC2.28□□□□□ -2.04
USP54Q70EL1 RNU6-1251P-201ENST00000364502 107 ntBASIC2.28□□□□□ -2.05
USP54Q70EL1 HMGB1P10-201ENST00000395823 563 ntBASIC2.28□□□□□ -2.05
USP54Q70EL1 AC004965.1-201ENST00000413033 213 ntBASIC2.28□□□□□ -2.05
USP54Q70EL1 AC004594.1-217ENST00000422260 325 ntTSL 2 BASIC2.28□□□□□ -2.05
USP54Q70EL1 AC069257.1-202ENST00000425275 422 ntTSL 3 BASIC2.28□□□□□ -2.05
USP54Q70EL1 MTCYBP12-201ENST00000440559 1134 ntBASIC2.28□□□□□ -2.05
USP54Q70EL1 OR6C72P-201ENST00000451403 892 ntBASIC2.28□□□□□ -2.05
USP54Q70EL1 GPX5-203ENST00000469384 428 ntTSL 1 (best) BASIC2.28□□□□□ -2.05
USP54Q70EL1 APOA2-210ENST00000491350 263 ntTSL 1 (best) BASIC2.28□□□□□ -2.05
USP54Q70EL1 VTRNA2-2P-201ENST00000516091 103 ntBASIC2.28□□□□□ -2.05
USP54Q70EL1 HDAC2-AS2-206ENST00000517965 850 ntTSL 3 BASIC2.28□□□□□ -2.05
USP54Q70EL1 AF099810.1-201ENST00000554219 525 ntTSL 3 BASIC2.28□□□□□ -2.05
USP54Q70EL1 AC067805.1-201ENST00000559344 470 ntBASIC2.28□□□□□ -2.05
USP54Q70EL1 AP003117.1-201ENST00000602771 554 ntBASIC2.28□□□□□ -2.05
USP54Q70EL1 CCDC82-202ENST00000423339 1878 ntAPPRIS P2 TSL 1 (best) BASIC2.27□□□□□ -2.05
USP54Q70EL1 RNU1-57P-201ENST00000384491 166 ntBASIC2.27□□□□□ -2.05
USP54Q70EL1 RPS7P9-201ENST00000414704 586 ntBASIC2.27□□□□□ -2.05
USP54Q70EL1 SSXP9-201ENST00000417503 292 ntBASIC2.27□□□□□ -2.05
USP54Q70EL1 BLOC1S2P1-201ENST00000428431 301 ntBASIC2.27□□□□□ -2.05
USP54Q70EL1 OR51B8P-201ENST00000449892 769 ntBASIC2.27□□□□□ -2.05
USP54Q70EL1 AC104803.1-201ENST00000506917 529 ntTSL 3 BASIC2.27□□□□□ -2.05
USP54Q70EL1 AC010425.1-201ENST00000511734 554 ntTSL 4 BASIC2.27□□□□□ -2.05
USP54Q70EL1 RNU6-56P-201ENST00000516986 93 ntBASIC2.27□□□□□ -2.05
USP54Q70EL1 MIR4419B-201ENST00000577260 68 ntBASIC2.27□□□□□ -2.05
USP54Q70EL1 AC006023.2-201ENST00000609916 167 ntBASIC2.27□□□□□ -2.05
USP54Q70EL1 RMST_5.1-201ENST00000618704 126 ntBASIC2.27□□□□□ -2.05
USP54Q70EL1 CLECL1-204ENST00000621400 611 ntAPPRIS ALT2 TSL 5 BASIC2.27□□□□□ -2.05
USP54Q70EL1 AP003171.2-202ENST00000634657 355 ntTSL 5 BASIC2.27□□□□□ -2.05
USP54Q70EL1 AC087521.4-201ENST00000637427 289 ntTSL 5 BASIC2.27□□□□□ -2.05
USP54Q70EL1 CADM2-AS1-201ENST00000476021 2656 ntTSL 1 (best) BASIC2.27□□□□□ -2.05
USP54Q70EL1 C11orf40-201ENST00000307616 654 ntAPPRIS P1 TSL 1 (best) BASIC2.26□□□□□ -2.05
USP54Q70EL1 RNU6-392P-201ENST00000364926 101 ntBASIC2.26□□□□□ -2.05
USP54Q70EL1 SNORD65-201ENST00000391079 73 ntBASIC2.26□□□□□ -2.05
USP54Q70EL1 AL031663.1-201ENST00000437445 219 ntBASIC2.26□□□□□ -2.05
USP54Q70EL1 OR7L1P-201ENST00000456181 380 ntBASIC2.26□□□□□ -2.05
USP54Q70EL1 SNRPFP4-201ENST00000456366 242 ntBASIC2.26□□□□□ -2.05
USP54Q70EL1 ARPC3P2-201ENST00000457786 533 ntBASIC2.26□□□□□ -2.05
USP54Q70EL1 AIG1P1-201ENST00000503376 148 ntBASIC2.26□□□□□ -2.05
USP54Q70EL1 AC108120.2-201ENST00000512973 294 ntBASIC2.26□□□□□ -2.05
USP54Q70EL1 HSPE1P20-201ENST00000538133 289 ntBASIC2.26□□□□□ -2.05
USP54Q70EL1 AL355076.2-202ENST00000553754 574 ntTSL 4 BASIC2.26□□□□□ -2.05
USP54Q70EL1 LINC02301-201ENST00000553760 773 ntTSL 3 BASIC2.26□□□□□ -2.05
USP54Q70EL1 MTND4LP24-201ENST00000572277 291 ntBASIC2.26□□□□□ -2.05
USP54Q70EL1 AC103987.3-201ENST00000582071 292 ntBASIC2.26□□□□□ -2.05
USP54Q70EL1 AL035411.2-201ENST00000604022 421 ntBASIC2.26□□□□□ -2.05
USP54Q70EL1 MIR502-201ENST00000606349 86 ntBASIC2.26□□□□□ -2.05
USP54Q70EL1 KTN1-204ENST00000395311 4516 ntAPPRIS ALT2 TSL 1 (best) BASIC2.26□□□□□ -2.05
Retrieved 100 of 98,524 protein–RNA pairs in 100.5 ms