Protein–RNA interactions for Protein: Q6ZMZ3

SYNE3, Nesprin-3, humanhuman

Predictions only

Length 975 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE3Q6ZMZ3 Y_RNA.436-201ENST00000384097 102 ntBASIC4.08□□□□□ -1.76
SYNE3Q6ZMZ3 LGALS16-201ENST00000392051 624 ntAPPRIS P1 TSL 1 (best) BASIC4.08□□□□□ -1.76
SYNE3Q6ZMZ3 PAPOLA-202ENST00000392990 2588 ntTSL 5 BASIC4.08□□□□□ -1.76
SYNE3Q6ZMZ3 AL356421.1-201ENST00000403255 413 ntBASIC4.08□□□□□ -1.76
SYNE3Q6ZMZ3 RNU6ATAC34P-201ENST00000408879 121 ntBASIC4.08□□□□□ -1.76
SYNE3Q6ZMZ3 LINC00894-201ENST00000413076 403 ntTSL 3 BASIC4.08□□□□□ -1.76
SYNE3Q6ZMZ3 AC000123.1-201ENST00000418215 516 ntTSL 5 BASIC4.08□□□□□ -1.76
SYNE3Q6ZMZ3 TTC3-AS1-201ENST00000424733 1097 ntTSL 1 (best) BASIC4.08□□□□□ -1.76
SYNE3Q6ZMZ3 AC020571.1-201ENST00000430904 768 ntTSL 2 BASIC4.08□□□□□ -1.76
SYNE3Q6ZMZ3 AL138916.1-201ENST00000436295 455 ntTSL 3 BASIC4.08□□□□□ -1.76
SYNE3Q6ZMZ3 MTCO1P19-201ENST00000443487 500 ntBASIC4.08□□□□□ -1.76
SYNE3Q6ZMZ3 FAM103A2P-201ENST00000444122 354 ntBASIC4.08□□□□□ -1.76
SYNE3Q6ZMZ3 AC099342.1-201ENST00000446399 1124 ntTSL 3 BASIC4.08□□□□□ -1.76
SYNE3Q6ZMZ3 RPL21P23-201ENST00000446654 460 ntBASIC4.08□□□□□ -1.76
SYNE3Q6ZMZ3 LINC01810-201ENST00000450397 411 ntTSL 3 BASIC4.08□□□□□ -1.76
SYNE3Q6ZMZ3 Z82190.1-201ENST00000454534 490 ntBASIC4.08□□□□□ -1.76
SYNE3Q6ZMZ3 U3.44-201ENST00000458938 192 ntBASIC4.08□□□□□ -1.76
SYNE3Q6ZMZ3 AC092608.1-201ENST00000503505 267 ntTSL 2 BASIC4.08□□□□□ -1.76
SYNE3Q6ZMZ3 LINC01861-201ENST00000509568 537 ntTSL 4 BASIC4.08□□□□□ -1.76
SYNE3Q6ZMZ3 AC091965.2-201ENST00000512324 613 ntBASIC4.08□□□□□ -1.76
SYNE3Q6ZMZ3 GTF2H2C-212ENST00000512736 832 ntTSL 1 (best) BASIC4.08□□□□□ -1.76
SYNE3Q6ZMZ3 Y_RNA.655-201ENST00000515919 96 ntBASIC4.08□□□□□ -1.76
SYNE3Q6ZMZ3 RNU6-1231P-201ENST00000517185 103 ntBASIC4.08□□□□□ -1.76
SYNE3Q6ZMZ3 AC084116.2-201ENST00000520171 415 ntTSL 4 BASIC4.08□□□□□ -1.76
SYNE3Q6ZMZ3 AP006245.1-201ENST00000522549 120 ntBASIC4.08□□□□□ -1.76
SYNE3Q6ZMZ3 AC006518.2-202ENST00000544947 297 ntTSL 2 BASIC4.08□□□□□ -1.76
SYNE3Q6ZMZ3 AC090049.1-201ENST00000551075 1011 ntTSL 3 BASIC4.08□□□□□ -1.76
SYNE3Q6ZMZ3 AL135746.1-201ENST00000554205 547 ntTSL 3 BASIC4.08□□□□□ -1.76
SYNE3Q6ZMZ3 TGIF1P1-201ENST00000558095 802 ntBASIC4.08□□□□□ -1.76
SYNE3Q6ZMZ3 AC003687.1-201ENST00000578040 427 ntTSL 3 BASIC4.08□□□□□ -1.76
SYNE3Q6ZMZ3 MIR4425-201ENST00000580572 84 ntBASIC4.08□□□□□ -1.76
SYNE3Q6ZMZ3 UBE2L4-201ENST00000587688 464 ntBASIC4.08□□□□□ -1.76
SYNE3Q6ZMZ3 AC091965.4-201ENST00000607691 587 ntBASIC4.08□□□□□ -1.76
SYNE3Q6ZMZ3 AC239868.4-201ENST00000608318 671 ntBASIC4.08□□□□□ -1.76
SYNE3Q6ZMZ3 AC092636.1-201ENST00000608609 415 ntTSL 2 BASIC4.08□□□□□ -1.76
SYNE3Q6ZMZ3 AL591441.2-201ENST00000620059 535 ntTSL 5 BASIC4.08□□□□□ -1.76
SYNE3Q6ZMZ3 AC022149.2-201ENST00000621061 203 ntBASIC4.08□□□□□ -1.76
SYNE3Q6ZMZ3 AC002550.2-201ENST00000621246 394 ntBASIC4.08□□□□□ -1.76
SYNE3Q6ZMZ3 AL356585.4-201ENST00000623078 1229 ntBASIC4.08□□□□□ -1.76
SYNE3Q6ZMZ3 AL158801.5-201ENST00000623123 465 ntBASIC4.08□□□□□ -1.76
SYNE3Q6ZMZ3 PRO1804-201ENST00000623780 2050 ntBASIC4.08□□□□□ -1.76
SYNE3Q6ZMZ3 AC244258.1-201ENST00000637553 1071 ntBASIC4.08□□□□□ -1.76
SYNE3Q6ZMZ3 CRYM-AS1-204ENST00000637983 556 ntBASIC4.08□□□□□ -1.76
SYNE3Q6ZMZ3 AL645937.1-201ENST00000641739 1652 ntBASIC4.08□□□□□ -1.76
SYNE3Q6ZMZ3 VPS13C-203ENST00000395896 14579 ntAPPRIS ALT2 TSL 1 (best) BASIC4.08□□□□□ -1.76
SYNE3Q6ZMZ3 UBE2W-203ENST00000517608 8426 ntTSL 1 (best) BASIC4.08□□□□□ -1.76
SYNE3Q6ZMZ3 MIPOL1-206ENST00000545536 2073 ntTSL 5 BASIC4.07□□□□□ -1.76
SYNE3Q6ZMZ3 RNMT-206ENST00000589866 1879 ntAPPRIS P1 TSL 1 (best) BASIC4.07□□□□□ -1.76
SYNE3Q6ZMZ3 AC019117.3-201ENST00000637807 3523 ntAPPRIS P1 TSL 5 BASIC4.07□□□□□ -1.76
SYNE3Q6ZMZ3 C6orf10-203ENST00000442822 1696 ntAPPRIS ALT2 TSL 1 (best) BASIC4.07□□□□□ -1.76
SYNE3Q6ZMZ3 MTND5P33-201ENST00000571250 1450 ntBASIC4.07□□□□□ -1.76
SYNE3Q6ZMZ3 TRAPPC13-204ENST00000438419 1437 ntAPPRIS P4 TSL 1 (best) BASIC4.07□□□□□ -1.76
SYNE3Q6ZMZ3 AC092104.1-201ENST00000497346 1441 ntBASIC4.07□□□□□ -1.76
SYNE3Q6ZMZ3 MACC1-205ENST00000589011 2686 ntAPPRIS P1 TSL 5 BASIC4.07□□□□□ -1.76
SYNE3Q6ZMZ3 Y_RNA.194-201ENST00000363985 102 ntBASIC4.07□□□□□ -1.76
SYNE3Q6ZMZ3 SNORA73.2-201ENST00000364946 201 ntBASIC4.07□□□□□ -1.76
SYNE3Q6ZMZ3 RNU5E-5P-201ENST00000365379 116 ntBASIC4.07□□□□□ -1.76
SYNE3Q6ZMZ3 RNU6-1207P-201ENST00000384343 107 ntBASIC4.07□□□□□ -1.76
SYNE3Q6ZMZ3 SNORA11-201ENST00000408789 128 ntBASIC4.07□□□□□ -1.76
SYNE3Q6ZMZ3 RPL21P32-201ENST00000419877 477 ntBASIC4.07□□□□□ -1.76
SYNE3Q6ZMZ3 AC244098.2-201ENST00000422068 99 ntBASIC4.07□□□□□ -1.76
SYNE3Q6ZMZ3 AL021026.1-201ENST00000422841 658 ntTSL 3 BASIC4.07□□□□□ -1.76
SYNE3Q6ZMZ3 AL391336.1-201ENST00000424678 484 ntTSL 3 BASIC4.07□□□□□ -1.76
SYNE3Q6ZMZ3 AC092641.1-201ENST00000440229 772 ntBASIC4.07□□□□□ -1.76
SYNE3Q6ZMZ3 AL139383.1-203ENST00000445227 420 ntTSL 3 BASIC4.07□□□□□ -1.76
SYNE3Q6ZMZ3 NUTM2A-AS1-209ENST00000447424 571 ntTSL 3 BASIC4.07□□□□□ -1.76
SYNE3Q6ZMZ3 RNU6-956P-201ENST00000458868 103 ntBASIC4.07□□□□□ -1.76
SYNE3Q6ZMZ3 SNORA84-201ENST00000459229 133 ntBASIC4.07□□□□□ -1.76
SYNE3Q6ZMZ3 TAF8-207ENST00000482432 556 ntTSL 2 BASIC4.07□□□□□ -1.76
SYNE3Q6ZMZ3 AC021382.1-201ENST00000483523 359 ntBASIC4.07□□□□□ -1.76
SYNE3Q6ZMZ3 AC068724.1-201ENST00000487100 792 ntBASIC4.07□□□□□ -1.76
SYNE3Q6ZMZ3 AC010451.3-201ENST00000511721 444 ntTSL 3 BASIC4.07□□□□□ -1.76
SYNE3Q6ZMZ3 AC109454.3-201ENST00000512748 669 ntTSL 3 BASIC4.07□□□□□ -1.76
SYNE3Q6ZMZ3 IGKV2D-19-201ENST00000523346 262 ntBASIC4.07□□□□□ -1.76
SYNE3Q6ZMZ3 AP000442.2-202ENST00000531311 601 ntTSL 3 BASIC4.07□□□□□ -1.76
SYNE3Q6ZMZ3 OR5B10P-201ENST00000532869 642 ntBASIC4.07□□□□□ -1.76
SYNE3Q6ZMZ3 AC010183.2-202ENST00000546791 382 ntTSL 3 BASIC4.07□□□□□ -1.76
SYNE3Q6ZMZ3 AC025254.1-201ENST00000550035 247 ntTSL 5 BASIC4.07□□□□□ -1.76
SYNE3Q6ZMZ3 AC107023.1-201ENST00000552757 356 ntTSL 5 BASIC4.07□□□□□ -1.76
SYNE3Q6ZMZ3 AC103987.3-201ENST00000582071 292 ntBASIC4.07□□□□□ -1.76
SYNE3Q6ZMZ3 AC097467.3-204ENST00000595229 827 ntTSL 5 BASIC4.07□□□□□ -1.76
SYNE3Q6ZMZ3 AP001972.3-202ENST00000603012 375 ntTSL 3 BASIC4.07□□□□□ -1.76
SYNE3Q6ZMZ3 AC006557.5-201ENST00000603126 811 ntBASIC4.07□□□□□ -1.76
SYNE3Q6ZMZ3 AC128687.1-201ENST00000605304 619 ntBASIC4.07□□□□□ -1.76
SYNE3Q6ZMZ3 MIR8058-201ENST00000615737 89 ntBASIC4.07□□□□□ -1.76
SYNE3Q6ZMZ3 AC092656.1-203ENST00000624134 423 ntBASIC4.07□□□□□ -1.76
SYNE3Q6ZMZ3 SATB1-AS1-226ENST00000625515 776 ntTSL 5 BASIC4.07□□□□□ -1.76
SYNE3Q6ZMZ3 TET2-204ENST00000413648 4973 ntTSL 1 (best) BASIC4.07□□□□□ -1.76
SYNE3Q6ZMZ3 RTKN2-201ENST00000315289 2383 ntTSL 2 BASIC4.07□□□□□ -1.76
SYNE3Q6ZMZ3 SAGE1-203ENST00000537770 1824 ntAPPRIS ALT2 TSL 5 BASIC4.07□□□□□ -1.76
SYNE3Q6ZMZ3 FAM71D-211ENST00000612183 1790 ntAPPRIS P1 TSL 2 BASIC4.07□□□□□ -1.76
SYNE3Q6ZMZ3 GPRC6A-202ENST00000368549 2622 ntTSL 1 (best) BASIC4.07□□□□□ -1.76
SYNE3Q6ZMZ3 MCF2-210ENST00000536274 3461 ntAPPRIS ALT2 TSL 2 BASIC4.07□□□□□ -1.76
SYNE3Q6ZMZ3 D21S2088E-201ENST00000262354 1725 ntTSL 1 (best) BASIC4.07□□□□□ -1.76
SYNE3Q6ZMZ3 IBTK-209ENST00000510291 4109 ntTSL 1 (best) BASIC4.06□□□□□ -1.76
SYNE3Q6ZMZ3 ADGRV1-201ENST00000405460 19557 ntAPPRIS P1 TSL 1 (best) BASIC4.06□□□□□ -1.76
SYNE3Q6ZMZ3 DNAH12-201ENST00000311202 1555 ntTSL 2 BASIC4.06□□□□□ -1.76
SYNE3Q6ZMZ3 XRCC4-203ENST00000396027 1530 ntAPPRIS ALT1 TSL 5 BASIC4.06□□□□□ -1.76
SYNE3Q6ZMZ3 DAOA-201ENST00000329625 1433 ntAPPRIS ALT2 TSL 1 (best) BASIC4.06□□□□□ -1.76
SYNE3Q6ZMZ3 CENPJ-205ENST00000545981 4299 ntTSL 2 BASIC4.06□□□□□ -1.76
Retrieved 100 of 98,524 protein–RNA pairs in 97.4 ms