Protein–RNA interactions for Protein: P20849

COL9A1, Collagen alpha-1(IX) chain, humanhuman

Predictions only

Length 921 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1P20849 BPIFA4P-203ENST00000603168 689 ntBASIC6.12□□□□□ -1.43
COL9A1P20849 AC107294.1-201ENST00000609524 467 ntBASIC6.12□□□□□ -1.43
COL9A1P20849 AL161629.2-201ENST00000615347 275 ntBASIC6.12□□□□□ -1.43
COL9A1P20849 ZNF780A-203ENST00000450241 7500 ntTSL 2 BASIC6.12□□□□□ -1.43
COL9A1P20849 HHLA1-201ENST00000414222 4105 ntAPPRIS ALT2 TSL 5 BASIC6.12□□□□□ -1.43
COL9A1P20849 ZYG11B-201ENST00000294353 8093 ntAPPRIS P1 TSL 1 (best) BASIC6.12□□□□□ -1.43
COL9A1P20849 ZNF112-202ENST00000354340 3654 ntAPPRIS P3 TSL 1 (best) BASIC6.12□□□□□ -1.43
COL9A1P20849 LINC00284-201ENST00000423211 3208 ntTSL 2 BASIC6.12□□□□□ -1.43
COL9A1P20849 AC104162.1-201ENST00000430831 2382 ntBASIC6.11□□□□□ -1.43
COL9A1P20849 TMEM67-205ENST00000453321 4651 ntAPPRIS P1 TSL 1 (best) BASIC6.11□□□□□ -1.43
COL9A1P20849 THAP12P5-201ENST00000405864 2275 ntBASIC6.11□□□□□ -1.43
COL9A1P20849 ANK3-216ENST00000503366 5792 ntAPPRIS ALT2 TSL 2 BASIC6.11□□□□□ -1.43
COL9A1P20849 LUZP4-201ENST00000371920 1701 ntAPPRIS P2 TSL 1 (best) BASIC6.11□□□□□ -1.43
COL9A1P20849 PROX1-202ENST00000366958 8240 ntAPPRIS P1 TSL 1 (best) BASIC6.11□□□□□ -1.43
COL9A1P20849 MAPK10-323ENST00000641493 3207 ntBASIC6.11□□□□□ -1.43
COL9A1P20849 PREPL-216ENST00000541738 6049 ntTSL 2 BASIC6.11□□□□□ -1.43
COL9A1P20849 PIGN-220ENST00000638167 4195 ntTSL 5 BASIC6.11□□□□□ -1.43
COL9A1P20849 RBM48-202ENST00000481551 4093 ntTSL 1 (best) BASIC6.11□□□□□ -1.43
COL9A1P20849 DOCK9-216ENST00000627024 4096 ntTSL 2 BASIC6.11□□□□□ -1.43
COL9A1P20849 PCA3-201ENST00000412654 3922 ntTSL 1 (best) BASIC6.11□□□□□ -1.43
COL9A1P20849 AC078851.1-201ENST00000415918 298 ntTSL 3 BASIC6.11□□□□□ -1.43
COL9A1P20849 AC114803.1-201ENST00000417355 311 ntTSL 3 BASIC6.11□□□□□ -1.43
COL9A1P20849 MTATP6P4-201ENST00000427725 675 ntBASIC6.11□□□□□ -1.43
COL9A1P20849 LAMTOR3P1-201ENST00000428620 370 ntBASIC6.11□□□□□ -1.43
COL9A1P20849 AC011742.1-201ENST00000431448 434 ntBASIC6.11□□□□□ -1.43
COL9A1P20849 AC016027.4-201ENST00000450866 277 ntBASIC6.11□□□□□ -1.43
COL9A1P20849 snoU13.22-201ENST00000459428 104 ntBASIC6.11□□□□□ -1.43
COL9A1P20849 AC104164.2-201ENST00000496953 495 ntBASIC6.11□□□□□ -1.43
COL9A1P20849 RNU6-927P-201ENST00000516199 100 ntBASIC6.11□□□□□ -1.43
COL9A1P20849 RN7SKP272-201ENST00000516988 232 ntBASIC6.11□□□□□ -1.43
COL9A1P20849 AC005476.1-201ENST00000554427 397 ntBASIC6.11□□□□□ -1.43
COL9A1P20849 AC018695.3-201ENST00000602617 408 ntTSL 2 BASIC6.11□□□□□ -1.43
COL9A1P20849 AC008121.1-201ENST00000603244 268 ntBASIC6.11□□□□□ -1.43
COL9A1P20849 AC135050.6-201ENST00000610813 528 ntTSL 3 BASIC6.11□□□□□ -1.43
COL9A1P20849 AC126915.2-201ENST00000610957 190 ntBASIC6.11□□□□□ -1.43
COL9A1P20849 AL627309.5-201ENST00000484859 4860 ntTSL 5 BASIC6.11□□□□□ -1.43
COL9A1P20849 MYPN-202ENST00000358913 6013 ntAPPRIS P1 TSL 1 (best) BASIC6.11□□□□□ -1.43
COL9A1P20849 IFIT2-201ENST00000371826 3489 ntAPPRIS P2 TSL 1 (best) BASIC6.11□□□□□ -1.43
COL9A1P20849 VEZT-204ENST00000436874 4562 ntAPPRIS P1 TSL 1 (best) BASIC6.11□□□□□ -1.43
COL9A1P20849 OR10G7-202ENST00000641585 3449 ntAPPRIS P1 BASIC6.11□□□□□ -1.43
COL9A1P20849 KIAA0232-202ENST00000425103 7771 ntAPPRIS P1 TSL 1 (best) BASIC6.11□□□□□ -1.43
COL9A1P20849 CWF19L2-201ENST00000282251 3278 ntAPPRIS P1 TSL 1 (best) BASIC6.11□□□□□ -1.43
COL9A1P20849 KCNJ16-202ENST00000392670 4009 ntAPPRIS P1 TSL 1 (best) BASIC6.11□□□□□ -1.43
COL9A1P20849 RNF20-202ENST00000389120 3940 ntAPPRIS P1 TSL 1 (best) BASIC6.11□□□□□ -1.43
COL9A1P20849 AC064875.1-201ENST00000425974 1942 ntTSL 2 BASIC6.11□□□□□ -1.43
COL9A1P20849 LINC00702-203ENST00000608792 6300 ntTSL 4 BASIC6.11□□□□□ -1.43
COL9A1P20849 NBPF12-206ENST00000617844 6326 ntAPPRIS P2 TSL 5 BASIC6.11□□□□□ -1.43
COL9A1P20849 GLRA2-202ENST00000355020 1730 ntAPPRIS ALT1 TSL 1 (best) BASIC6.11□□□□□ -1.43
COL9A1P20849 TRAF5-201ENST00000261464 3972 ntAPPRIS P1 TSL 1 (best) BASIC6.1□□□□□ -1.43
COL9A1P20849 ATF7IP2-204ENST00000396560 3665 ntAPPRIS P1 TSL 1 (best) BASIC6.1□□□□□ -1.43
COL9A1P20849 ZNF410-202ENST00000334521 2193 ntTSL 5 BASIC6.1□□□□□ -1.43
COL9A1P20849 ALG13-202ENST00000371979 2770 ntTSL 1 (best) BASIC6.1□□□□□ -1.43
COL9A1P20849 FTO-206ENST00000471389 11766 ntAPPRIS P1 TSL 1 (best) BASIC6.1□□□□□ -1.43
COL9A1P20849 TMTC2-204ENST00000549919 6211 ntTSL 1 (best) BASIC6.1□□□□□ -1.43
COL9A1P20849 PDZRN4-201ENST00000298919 3411 ntTSL 2 BASIC6.1□□□□□ -1.43
COL9A1P20849 CRNDE-212ENST00000613942 2601 ntTSL 5 BASIC6.1□□□□□ -1.43
COL9A1P20849 WDCP-201ENST00000295148 3817 ntAPPRIS P3 TSL 2 BASIC6.1□□□□□ -1.43
COL9A1P20849 RNA5SP183-201ENST00000362452 119 ntBASIC6.1□□□□□ -1.43
COL9A1P20849 Y_RNA.412-201ENST00000384001 104 ntBASIC6.1□□□□□ -1.43
COL9A1P20849 TRAJ6-201ENST00000390531 62 ntAPPRIS P1 BASIC6.1□□□□□ -1.43
COL9A1P20849 RNU1-139P-201ENST00000391307 165 ntBASIC6.1□□□□□ -1.43
COL9A1P20849 TBCAP2-201ENST00000416175 326 ntBASIC6.1□□□□□ -1.43
COL9A1P20849 NME1P1-201ENST00000420914 382 ntBASIC6.1□□□□□ -1.43
COL9A1P20849 TBCAP1-201ENST00000436520 327 ntBASIC6.1□□□□□ -1.43
COL9A1P20849 MRPS10P1-201ENST00000448483 130 ntBASIC6.1□□□□□ -1.43
COL9A1P20849 BX276092.4-201ENST00000452056 248 ntBASIC6.1□□□□□ -1.43
COL9A1P20849 RPS23P6-201ENST00000466136 431 ntBASIC6.1□□□□□ -1.43
COL9A1P20849 SNORA40.9-201ENST00000515895 93 ntBASIC6.1□□□□□ -1.43
COL9A1P20849 RNU6-1095P-201ENST00000516148 108 ntBASIC6.1□□□□□ -1.43
COL9A1P20849 AC107973.1-201ENST00000530249 576 ntTSL 4 BASIC6.1□□□□□ -1.43
COL9A1P20849 MIR4679-2-201ENST00000578358 77 ntBASIC6.1□□□□□ -1.43
COL9A1P20849 AC087783.2-201ENST00000605070 562 ntBASIC6.1□□□□□ -1.43
COL9A1P20849 MIR663AHG-231ENST00000609044 590 ntTSL 5 BASIC6.1□□□□□ -1.43
COL9A1P20849 RMST_6.1-201ENST00000611980 203 ntBASIC6.1□□□□□ -1.43
COL9A1P20849 5_8S_rRNA.1-201ENST00000614365 152 ntBASIC6.1□□□□□ -1.43
COL9A1P20849 Y_RNA.802-201ENST00000614892 130 ntBASIC6.1□□□□□ -1.43
COL9A1P20849 LGALS13-204ENST00000621475 494 ntAPPRIS ALT2 TSL 5 BASIC6.1□□□□□ -1.43
COL9A1P20849 AC006001.4-201ENST00000622243 395 ntBASIC6.1□□□□□ -1.43
COL9A1P20849 SCARNA4-201ENST00000629045 128 ntBASIC6.1□□□□□ -1.43
COL9A1P20849 FTO-204ENST00000463855 3056 ntTSL 1 (best) BASIC6.1□□□□□ -1.43
COL9A1P20849 CSMD2-210ENST00000619121 13430 ntAPPRIS ALT2 TSL 5 BASIC6.1□□□□□ -1.43
COL9A1P20849 FAM197Y2-202ENST00000448006 2338 ntTSL 2 BASIC6.1□□□□□ -1.43
COL9A1P20849 ZNF605-204ENST00000392321 6156 ntAPPRIS ALT2 TSL 2 BASIC6.1□□□□□ -1.43
COL9A1P20849 SEPT7-AS1-203ENST00000437235 3810 ntTSL 5 BASIC6.1□□□□□ -1.43
COL9A1P20849 NRK-201ENST00000243300 8062 ntAPPRIS P1 TSL 1 (best) BASIC6.1□□□□□ -1.43
COL9A1P20849 ROR1-204ENST00000545203 5362 ntAPPRIS ALT2 TSL 5 BASIC6.1□□□□□ -1.43
COL9A1P20849 PTPRG-AS1-204ENST00000474795 2661 ntTSL 1 (best) BASIC6.1□□□□□ -1.43
COL9A1P20849 AC012254.3-201ENST00000591183 2117 ntBASIC6.1□□□□□ -1.43
COL9A1P20849 AC062029.1-202ENST00000606164 3651 ntBASIC6.1□□□□□ -1.43
COL9A1P20849 PABPC1P8-201ENST00000452851 2086 ntBASIC6.1□□□□□ -1.43
COL9A1P20849 AC110774.1-201ENST00000623567 2018 ntBASIC6.09□□□□□ -1.43
COL9A1P20849 MID1-206ENST00000380787 5973 ntAPPRIS P1 TSL 1 (best) BASIC6.09□□□□□ -1.43
COL9A1P20849 ZNF254-208ENST00000616028 3886 ntTSL 4 BASIC6.09□□□□□ -1.43
COL9A1P20849 STXBP5-203ENST00000367480 3297 ntTSL 5 BASIC6.09□□□□□ -1.43
COL9A1P20849 AMOT-203ENST00000371959 7319 ntAPPRIS ALT2 TSL 1 (best) BASIC6.09□□□□□ -1.43
COL9A1P20849 PYGO1-202ENST00000563719 2653 ntAPPRIS P1 TSL 5 BASIC6.09□□□□□ -1.43
COL9A1P20849 RBPJ-202ENST00000342320 5761 ntAPPRIS P3 TSL 1 (best) BASIC6.09□□□□□ -1.43
COL9A1P20849 SLC17A8-201ENST00000323346 3983 ntAPPRIS P1 TSL 1 (best) BASIC6.09□□□□□ -1.43
COL9A1P20849 UBE2L2-201ENST00000254302 429 ntBASIC6.09□□□□□ -1.43
COL9A1P20849 RPL26-201ENST00000293842 524 ntAPPRIS P1 TSL 1 (best) BASIC6.09□□□□□ -1.43
Retrieved 100 of 98,524 protein–RNA pairs in 103.5 ms