Protein–RNA interactions for Protein: Q9Y6I4

USP3, Ubiquitin carboxyl-terminal hydrolase 3, humanhuman

Predictions only

Length 520 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP3Q9Y6I4 KCNJ10-205ENST00000638728 4351 ntAPPRIS P1 TSL 5 BASIC5.53□□□□□ -1.52
USP3Q9Y6I4 CPNE4-214ENST00000617767 3556 ntTSL 2 BASIC5.52□□□□□ -1.53
USP3Q9Y6I4 ARHGEF12-213ENST00000532993 8753 ntTSL 1 (best) BASIC5.52□□□□□ -1.53
USP3Q9Y6I4 MTND5P6-201ENST00000422338 1798 ntBASIC5.52□□□□□ -1.53
USP3Q9Y6I4 ZNF780A-205ENST00000594395 2044 ntAPPRIS ALT2 TSL 2 BASIC5.52□□□□□ -1.53
USP3Q9Y6I4 ZNF382-204ENST00000439428 2742 ntAPPRIS ALT2 TSL 1 (best) BASIC5.52□□□□□ -1.53
USP3Q9Y6I4 DYNC1I2-201ENST00000340296 2589 ntAPPRIS P4 TSL 1 (best) BASIC5.52□□□□□ -1.53
USP3Q9Y6I4 AC138393.1-203ENST00000327086 343 ntBASIC5.52□□□□□ -1.53
USP3Q9Y6I4 RNU1-35P-201ENST00000362782 153 ntBASIC5.52□□□□□ -1.53
USP3Q9Y6I4 C1orf54-202ENST00000369099 600 ntAPPRIS P1 TSL 1 (best) BASIC5.52□□□□□ -1.53
USP3Q9Y6I4 AC008065.1-201ENST00000428525 348 ntBASIC5.52□□□□□ -1.53
USP3Q9Y6I4 AL353680.1-201ENST00000433788 337 ntTSL 3 BASIC5.52□□□□□ -1.53
USP3Q9Y6I4 AC092637.1-201ENST00000444745 510 ntTSL 5 BASIC5.52□□□□□ -1.53
USP3Q9Y6I4 CHEK2P4-201ENST00000450340 246 ntBASIC5.52□□□□□ -1.53
USP3Q9Y6I4 AL603839.1-201ENST00000453437 432 ntTSL 2 BASIC5.52□□□□□ -1.53
USP3Q9Y6I4 AC117462.1-201ENST00000461186 554 ntTSL 4 BASIC5.52□□□□□ -1.53
USP3Q9Y6I4 RN7SL189P-201ENST00000468631 289 ntBASIC5.52□□□□□ -1.53
USP3Q9Y6I4 BX284632.1-201ENST00000478218 541 ntBASIC5.52□□□□□ -1.53
USP3Q9Y6I4 HAX1-208ENST00000483970 1151 ntTSL 2 BASIC5.52□□□□□ -1.53
USP3Q9Y6I4 VN1R105P-201ENST00000486595 910 ntBASIC5.52□□□□□ -1.53
USP3Q9Y6I4 RNU6-138P-201ENST00000515952 107 ntBASIC5.52□□□□□ -1.53
USP3Q9Y6I4 AC087369.1-201ENST00000520775 996 ntBASIC5.52□□□□□ -1.53
USP3Q9Y6I4 AC090692.1-202ENST00000525363 607 ntTSL 4 BASIC5.52□□□□□ -1.53
USP3Q9Y6I4 LINC00871-201ENST00000555246 408 ntTSL 5 BASIC5.52□□□□□ -1.53
USP3Q9Y6I4 AC092120.1-201ENST00000562211 420 ntTSL 3 BASIC5.52□□□□□ -1.53
USP3Q9Y6I4 AL390123.1-201ENST00000603216 237 ntBASIC5.52□□□□□ -1.53
USP3Q9Y6I4 RAC1P9-201ENST00000604990 392 ntBASIC5.52□□□□□ -1.53
USP3Q9Y6I4 AL160281.1-201ENST00000605307 311 ntBASIC5.52□□□□□ -1.53
USP3Q9Y6I4 AC005344.1-201ENST00000613391 459 ntBASIC5.52□□□□□ -1.53
USP3Q9Y6I4 SDR42E1P2-201ENST00000614861 481 ntBASIC5.52□□□□□ -1.53
USP3Q9Y6I4 SDR42E1P4-201ENST00000620894 481 ntBASIC5.52□□□□□ -1.53
USP3Q9Y6I4 MIR6719-201ENST00000622428 87 ntBASIC5.52□□□□□ -1.53
USP3Q9Y6I4 AC018445.2-201ENST00000622987 260 ntBASIC5.52□□□□□ -1.53
USP3Q9Y6I4 AL512643.1-201ENST00000635735 524 ntBASIC5.52□□□□□ -1.53
USP3Q9Y6I4 PRKAA1-204ENST00000397128 5088 ntAPPRIS P1 TSL 1 (best) BASIC5.52□□□□□ -1.53
USP3Q9Y6I4 HEATR1-203ENST00000366582 8447 ntAPPRIS P1 TSL 5 BASIC5.52□□□□□ -1.53
USP3Q9Y6I4 ELMO1-207ENST00000442504 3154 ntAPPRIS P1 TSL 2 BASIC5.52□□□□□ -1.53
USP3Q9Y6I4 SRPK2-201ENST00000357311 3700 ntAPPRIS P3 TSL 1 (best) BASIC5.52□□□□□ -1.53
USP3Q9Y6I4 DNM1P47-202ENST00000561463 15043 ntTSL 5 BASIC5.52□□□□□ -1.53
USP3Q9Y6I4 LINC01197-202ENST00000555332 3568 ntTSL 3 BASIC5.52□□□□□ -1.53
USP3Q9Y6I4 PTPRD-205ENST00000397611 8242 ntTSL 5 BASIC5.52□□□□□ -1.53
USP3Q9Y6I4 APBB2-230ENST00000543538 6992 ntTSL 5 BASIC5.52□□□□□ -1.53
USP3Q9Y6I4 ZNF492-201ENST00000456783 4245 ntAPPRIS P1 TSL 1 (best) BASIC5.52□□□□□ -1.53
USP3Q9Y6I4 FGF1-202ENST00000359370 3660 ntAPPRIS P1 TSL 1 (best) BASIC5.52□□□□□ -1.53
USP3Q9Y6I4 PCGF5-201ENST00000336126 7018 ntAPPRIS P1 TSL 1 (best) BASIC5.52□□□□□ -1.53
USP3Q9Y6I4 DAZ1-206ENST00000620725 1891 ntTSL 5 BASIC5.51□□□□□ -1.53
USP3Q9Y6I4 AP005432.1-201ENST00000580891 3485 ntBASIC5.51□□□□□ -1.53
USP3Q9Y6I4 ITGAV-204ENST00000433736 3288 ntAPPRIS ALT2 TSL 2 BASIC5.51□□□□□ -1.53
USP3Q9Y6I4 CASP10-204ENST00000346817 3926 ntAPPRIS ALT2 TSL 5 BASIC5.51□□□□□ -1.53
USP3Q9Y6I4 CXCL9-201ENST00000264888 2740 ntAPPRIS P1 TSL 1 (best) BASIC5.51□□□□□ -1.53
USP3Q9Y6I4 TRDN-206ENST00000628709 1661 ntAPPRIS ALT2 TSL 1 (best) BASIC5.51□□□□□ -1.53
USP3Q9Y6I4 NAV2-AS5-201ENST00000528726 3307 ntTSL 1 (best) BASIC5.51□□□□□ -1.53
USP3Q9Y6I4 FANCI-201ENST00000300027 4713 ntAPPRIS P3 TSL 5 BASIC5.51□□□□□ -1.53
USP3Q9Y6I4 OR5AS1-201ENST00000313555 975 ntAPPRIS P1 BASIC5.51□□□□□ -1.53
USP3Q9Y6I4 Y_RNA.20-201ENST00000362479 113 ntBASIC5.51□□□□□ -1.53
USP3Q9Y6I4 RNY1P16-201ENST00000363063 111 ntBASIC5.51□□□□□ -1.53
USP3Q9Y6I4 U8.4-201ENST00000363626 134 ntBASIC5.51□□□□□ -1.53
USP3Q9Y6I4 APOA2-201ENST00000367990 474 ntAPPRIS P1 TSL 1 (best) BASIC5.51□□□□□ -1.53
USP3Q9Y6I4 MIR105-2-201ENST00000385083 81 ntBASIC5.51□□□□□ -1.53
USP3Q9Y6I4 SAR1AP2-201ENST00000392696 594 ntBASIC5.51□□□□□ -1.53
USP3Q9Y6I4 SPTLC1P2-201ENST00000407089 121 ntBASIC5.51□□□□□ -1.53
USP3Q9Y6I4 MIR1182-201ENST00000408363 97 ntBASIC5.51□□□□□ -1.53
USP3Q9Y6I4 RNU2-71P-201ENST00000411395 189 ntBASIC5.51□□□□□ -1.53
USP3Q9Y6I4 AC092809.3-201ENST00000415453 231 ntBASIC5.51□□□□□ -1.53
USP3Q9Y6I4 RPS15AP6-201ENST00000420703 385 ntBASIC5.51□□□□□ -1.53
USP3Q9Y6I4 AL391219.1-201ENST00000422570 483 ntBASIC5.51□□□□□ -1.53
USP3Q9Y6I4 FTLP19-201ENST00000433300 394 ntBASIC5.51□□□□□ -1.53
USP3Q9Y6I4 LINC02438-201ENST00000505347 641 ntTSL 3 BASIC5.51□□□□□ -1.53
USP3Q9Y6I4 AC006427.1-201ENST00000514359 712 ntBASIC5.51□□□□□ -1.53
USP3Q9Y6I4 RN7SKP258-201ENST00000517151 304 ntBASIC5.51□□□□□ -1.53
USP3Q9Y6I4 UQCRB-202ENST00000517523 515 ntTSL 2 BASIC5.51□□□□□ -1.53
USP3Q9Y6I4 SKP1-203ENST00000517625 876 ntAPPRIS P4 TSL 3 BASIC5.51□□□□□ -1.53
USP3Q9Y6I4 AC027369.5-201ENST00000533838 755 ntBASIC5.51□□□□□ -1.53
USP3Q9Y6I4 AC112481.1-201ENST00000549669 901 ntTSL 2 BASIC5.51□□□□□ -1.53
USP3Q9Y6I4 AL133279.1-202ENST00000556789 456 ntTSL 5 BASIC5.51□□□□□ -1.53
USP3Q9Y6I4 MIR4273-201ENST00000582824 84 ntBASIC5.51□□□□□ -1.53
USP3Q9Y6I4 LINC00649-204ENST00000593977 640 ntTSL 5 BASIC5.51□□□□□ -1.53
USP3Q9Y6I4 RPS29P30-201ENST00000600975 111 ntBASIC5.51□□□□□ -1.53
USP3Q9Y6I4 AC006363.1-201ENST00000603806 463 ntBASIC5.51□□□□□ -1.53
USP3Q9Y6I4 SHMT1-211ENST00000618902 378 ntTSL 5 BASIC5.51□□□□□ -1.53
USP3Q9Y6I4 LINC00923-207ENST00000619015 505 ntTSL 5 BASIC5.51□□□□□ -1.53
USP3Q9Y6I4 OR1A1-203ENST00000641732 3832 ntAPPRIS P1 BASIC5.51□□□□□ -1.53
USP3Q9Y6I4 AP002512.4-202ENST00000641599 4530 ntBASIC5.51□□□□□ -1.53
USP3Q9Y6I4 TRPC4-205ENST00000379679 2475 ntTSL 1 (best) BASIC5.51□□□□□ -1.53
USP3Q9Y6I4 RNF19A-205ENST00000519449 4330 ntAPPRIS P1 TSL 1 (best) BASIC5.51□□□□□ -1.53
USP3Q9Y6I4 VCAN-203ENST00000343200 9455 ntTSL 1 (best) BASIC5.51□□□□□ -1.53
USP3Q9Y6I4 ATF2-201ENST00000264110 4176 ntTSL 1 (best) BASIC5.51□□□□□ -1.53
USP3Q9Y6I4 LINC01524-201ENST00000428009 4390 ntTSL 1 (best) BASIC5.51□□□□□ -1.53
USP3Q9Y6I4 PPFIBP1-201ENST00000228425 5933 ntAPPRIS P1 TSL 1 (best) BASIC5.5□□□□□ -1.53
USP3Q9Y6I4 SLC16A9-201ENST00000395347 3646 ntAPPRIS P1 TSL 2 BASIC5.5□□□□□ -1.53
USP3Q9Y6I4 CUL2-201ENST00000374746 3903 ntTSL 5 BASIC5.5□□□□□ -1.53
USP3Q9Y6I4 WDR12-201ENST00000261015 8100 ntAPPRIS P1 TSL 1 (best) BASIC5.5□□□□□ -1.53
USP3Q9Y6I4 SETD2-202ENST00000409792 8142 ntAPPRIS P1 TSL 5 BASIC5.5□□□□□ -1.53
USP3Q9Y6I4 ERVFRD-3-201ENST00000578561 1617 ntBASIC5.5□□□□□ -1.53
USP3Q9Y6I4 Y_RNA.19-201ENST00000362462 99 ntBASIC5.5□□□□□ -1.53
USP3Q9Y6I4 RNA5SP90-201ENST00000364801 99 ntBASIC5.5□□□□□ -1.53
USP3Q9Y6I4 RN7SKP153-201ENST00000365026 316 ntBASIC5.5□□□□□ -1.53
USP3Q9Y6I4 SNORA51.11-201ENST00000384442 131 ntBASIC5.5□□□□□ -1.53
USP3Q9Y6I4 RNU6-790P-201ENST00000384479 105 ntBASIC5.5□□□□□ -1.53
USP3Q9Y6I4 SNORA48.4-201ENST00000391089 134 ntBASIC5.5□□□□□ -1.53
Retrieved 100 of 98,524 protein–RNA pairs in 99.8 ms