Protein–RNA interactions for Protein: Q9Y3E7

CHMP3, Charged multivesicular body protein 3, humanhuman

Predictions only

Length 222 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP3Q9Y3E7 PCDH15-209ENST00000395433 6942 ntTSL 5 BASIC5.99□□□□□ -1.45
CHMP3Q9Y3E7 ITCH-207ENST00000535650 2940 ntTSL 2 BASIC5.99□□□□□ -1.45
CHMP3Q9Y3E7 PIK3C3-217ENST00000639914 2722 ntTSL 5 BASIC5.99□□□□□ -1.45
CHMP3Q9Y3E7 ADNP-201ENST00000349014 5963 ntAPPRIS P1 TSL 1 (best) BASIC5.99□□□□□ -1.45
CHMP3Q9Y3E7 MTND5P30-201ENST00000452896 1731 ntBASIC5.99□□□□□ -1.45
CHMP3Q9Y3E7 TCHHL1-201ENST00000368806 3603 ntAPPRIS P1 TSL 1 (best) BASIC5.99□□□□□ -1.45
CHMP3Q9Y3E7 FOXP1-IT1-201ENST00000498714 3539 ntTSL 2 BASIC5.99□□□□□ -1.45
CHMP3Q9Y3E7 IPO5-201ENST00000261574 6003 ntTSL 1 (best) BASIC5.98□□□□□ -1.45
CHMP3Q9Y3E7 BDP1P-201ENST00000582658 1990 ntBASIC5.98□□□□□ -1.45
CHMP3Q9Y3E7 NXPH1-205ENST00000602349 1953 ntBASIC5.98□□□□□ -1.45
CHMP3Q9Y3E7 RGS4-202ENST00000367908 2606 ntTSL 2 BASIC5.98□□□□□ -1.45
CHMP3Q9Y3E7 ASTE1-208ENST00000514044 2504 ntTSL 1 (best) BASIC5.98□□□□□ -1.45
CHMP3Q9Y3E7 TLK1P1-201ENST00000456760 2440 ntBASIC5.98□□□□□ -1.45
CHMP3Q9Y3E7 ASAH2-204ENST00000447815 2311 ntTSL 1 (best) BASIC5.98□□□□□ -1.45
CHMP3Q9Y3E7 SMAD4-202ENST00000398417 8495 ntAPPRIS P1 TSL 5 BASIC5.98□□□□□ -1.45
CHMP3Q9Y3E7 GPR34-202ENST00000378142 1928 ntAPPRIS P1 TSL 1 (best) BASIC5.98□□□□□ -1.45
CHMP3Q9Y3E7 AC079741.1-201ENST00000321498 212 ntBASIC5.98□□□□□ -1.45
CHMP3Q9Y3E7 Y_RNA.149-201ENST00000363558 117 ntBASIC5.98□□□□□ -1.45
CHMP3Q9Y3E7 TRAV26-2-201ENST00000390460 327 ntAPPRIS P1 BASIC5.98□□□□□ -1.45
CHMP3Q9Y3E7 GLULP6-201ENST00000399502 913 ntBASIC5.98□□□□□ -1.45
CHMP3Q9Y3E7 AL359643.1-201ENST00000404109 423 ntBASIC5.98□□□□□ -1.45
CHMP3Q9Y3E7 AC016397.1-201ENST00000412463 242 ntBASIC5.98□□□□□ -1.45
CHMP3Q9Y3E7 RPL7P46-201ENST00000425129 740 ntBASIC5.98□□□□□ -1.45
CHMP3Q9Y3E7 GPC6-AS1-201ENST00000436329 698 ntTSL 5 BASIC5.98□□□□□ -1.45
CHMP3Q9Y3E7 CYCSP24-201ENST00000445119 316 ntBASIC5.98□□□□□ -1.45
CHMP3Q9Y3E7 AL354710.1-201ENST00000453641 246 ntBASIC5.98□□□□□ -1.45
CHMP3Q9Y3E7 AL133481.3-201ENST00000456546 333 ntTSL 3 BASIC5.98□□□□□ -1.45
CHMP3Q9Y3E7 RN7SL558P-201ENST00000497468 299 ntBASIC5.98□□□□□ -1.45
CHMP3Q9Y3E7 FTH1P24-201ENST00000503502 462 ntBASIC5.98□□□□□ -1.45
CHMP3Q9Y3E7 SCARNA22-201ENST00000503991 125 ntBASIC5.98□□□□□ -1.45
CHMP3Q9Y3E7 AC104806.1-201ENST00000508720 308 ntBASIC5.98□□□□□ -1.45
CHMP3Q9Y3E7 BMPR1B-AS1-201ENST00000510795 511 ntTSL 3 BASIC5.98□□□□□ -1.45
CHMP3Q9Y3E7 RNU6-64P-201ENST00000517119 105 ntBASIC5.98□□□□□ -1.45
CHMP3Q9Y3E7 RNU6-264P-201ENST00000517134 104 ntBASIC5.98□□□□□ -1.45
CHMP3Q9Y3E7 FTH1P11-201ENST00000517577 551 ntBASIC5.98□□□□□ -1.45
CHMP3Q9Y3E7 AC007619.1-201ENST00000544086 412 ntTSL 5 BASIC5.98□□□□□ -1.45
CHMP3Q9Y3E7 AC092470.1-201ENST00000546187 132 ntBASIC5.98□□□□□ -1.45
CHMP3Q9Y3E7 AC096558.2-201ENST00000546678 506 ntTSL 3 BASIC5.98□□□□□ -1.45
CHMP3Q9Y3E7 LINC02327-203ENST00000550122 738 ntTSL 2 BASIC5.98□□□□□ -1.45
CHMP3Q9Y3E7 OR11H5P-201ENST00000554039 926 ntBASIC5.98□□□□□ -1.45
CHMP3Q9Y3E7 AC003973.1-201ENST00000600071 546 ntTSL 4 BASIC5.98□□□□□ -1.45
CHMP3Q9Y3E7 AC234771.5-201ENST00000600161 514 ntBASIC5.98□□□□□ -1.45
CHMP3Q9Y3E7 AL355365.1-201ENST00000616480 294 ntBASIC5.98□□□□□ -1.45
CHMP3Q9Y3E7 AC008781.3-201ENST00000622826 335 ntTSL 2 BASIC5.98□□□□□ -1.45
CHMP3Q9Y3E7 Z69720.2-201ENST00000624755 279 ntBASIC5.98□□□□□ -1.45
CHMP3Q9Y3E7 LDHA-225ENST00000625635 141 ntTSL 5 BASIC5.98□□□□□ -1.45
CHMP3Q9Y3E7 WISP3-211ENST00000639360 1026 ntTSL 5 BASIC5.98□□□□□ -1.45
CHMP3Q9Y3E7 CYP3A43-204ENST00000354829 1709 ntAPPRIS ALT1 TSL 1 (best) BASIC5.98□□□□□ -1.45
CHMP3Q9Y3E7 CHL1-216ENST00000620033 7311 ntTSL 1 (best) BASIC5.98□□□□□ -1.45
CHMP3Q9Y3E7 PDE4B-201ENST00000329654 3998 ntTSL 1 (best) BASIC5.98□□□□□ -1.45
CHMP3Q9Y3E7 LRRC39-201ENST00000342895 1881 ntAPPRIS P1 TSL 5 BASIC5.98□□□□□ -1.45
CHMP3Q9Y3E7 CEP112-204ENST00000537949 2847 ntTSL 1 (best) BASIC5.98□□□□□ -1.45
CHMP3Q9Y3E7 MYB-226ENST00000528774 2277 ntAPPRIS ALT1 TSL 1 (best) BASIC5.97□□□□□ -1.45
CHMP3Q9Y3E7 DDX20-202ENST00000475700 4332 ntTSL 2 BASIC5.97□□□□□ -1.45
CHMP3Q9Y3E7 DMXL2-203ENST00000543779 10400 ntAPPRIS ALT2 TSL 1 (best) BASIC5.97□□□□□ -1.45
CHMP3Q9Y3E7 RAP1GDS1-206ENST00000453712 2470 ntAPPRIS ALT1 TSL 1 (best) BASIC5.97□□□□□ -1.45
CHMP3Q9Y3E7 RXFP1-204ENST00000423548 3930 ntTSL 2 BASIC5.97□□□□□ -1.45
CHMP3Q9Y3E7 RPS6KA5-207ENST00000614987 26795 ntAPPRIS P1 TSL 1 (best) BASIC5.97□□□□□ -1.45
CHMP3Q9Y3E7 ZBTB38-201ENST00000321464 3588 ntAPPRIS P1 BASIC5.97□□□□□ -1.45
CHMP3Q9Y3E7 FBXO38-218ENST00000513826 3585 ntTSL 1 (best) BASIC5.97□□□□□ -1.45
CHMP3Q9Y3E7 RAD51AP1-202ENST00000352618 2113 ntAPPRIS P3 TSL 1 (best) BASIC5.97□□□□□ -1.45
CHMP3Q9Y3E7 RNU6-1287P-201ENST00000362914 107 ntBASIC5.97□□□□□ -1.45
CHMP3Q9Y3E7 RNU6-702P-201ENST00000364982 107 ntBASIC5.97□□□□□ -1.45
CHMP3Q9Y3E7 SNORD116-11-201ENST00000383882 92 ntBASIC5.97□□□□□ -1.45
CHMP3Q9Y3E7 RNU6-1060P-201ENST00000384664 107 ntBASIC5.97□□□□□ -1.45
CHMP3Q9Y3E7 RNU2-21P-201ENST00000410368 188 ntBASIC5.97□□□□□ -1.45
CHMP3Q9Y3E7 MRLN-201ENST00000414264 422 ntAPPRIS P2 TSL 1 (best) BASIC5.97□□□□□ -1.45
CHMP3Q9Y3E7 ACTR3BP6-201ENST00000422332 1241 ntBASIC5.97□□□□□ -1.45
CHMP3Q9Y3E7 AL080248.1-201ENST00000428954 388 ntTSL 3 BASIC5.97□□□□□ -1.45
CHMP3Q9Y3E7 AC009478.1-201ENST00000429816 562 ntTSL 3 BASIC5.97□□□□□ -1.45
CHMP3Q9Y3E7 AL138759.1-201ENST00000432120 645 ntTSL 2 BASIC5.97□□□□□ -1.45
CHMP3Q9Y3E7 AC016831.4-201ENST00000438302 307 ntBASIC5.97□□□□□ -1.45
CHMP3Q9Y3E7 AL354949.1-201ENST00000446438 170 ntTSL 2 BASIC5.97□□□□□ -1.45
CHMP3Q9Y3E7 AC016696.1-201ENST00000446949 318 ntBASIC5.97□□□□□ -1.45
CHMP3Q9Y3E7 AC243772.1-201ENST00000451620 410 ntBASIC5.97□□□□□ -1.45
CHMP3Q9Y3E7 AL356981.1-201ENST00000454879 684 ntBASIC5.97□□□□□ -1.45
CHMP3Q9Y3E7 AC010326.1-201ENST00000462726 602 ntBASIC5.97□□□□□ -1.45
CHMP3Q9Y3E7 MTND4LP22-201ENST00000508209 276 ntBASIC5.97□□□□□ -1.45
CHMP3Q9Y3E7 AC073429.1-201ENST00000511749 503 ntTSL 3 BASIC5.97□□□□□ -1.45
CHMP3Q9Y3E7 AC010468.2-201ENST00000511981 438 ntTSL 2 BASIC5.97□□□□□ -1.45
CHMP3Q9Y3E7 ENPP7P9-201ENST00000514456 627 ntBASIC5.97□□□□□ -1.45
CHMP3Q9Y3E7 AC105031.1-201ENST00000518550 476 ntBASIC5.97□□□□□ -1.45
CHMP3Q9Y3E7 AF117829.1-204ENST00000519854 284 ntTSL 3 BASIC5.97□□□□□ -1.45
CHMP3Q9Y3E7 AC135001.1-201ENST00000544546 283 ntBASIC5.97□□□□□ -1.45
CHMP3Q9Y3E7 MIR5699-201ENST00000578903 90 ntBASIC5.97□□□□□ -1.45
CHMP3Q9Y3E7 LAMTOR5-AS1-217ENST00000608152 407 ntTSL 5 BASIC5.97□□□□□ -1.45
CHMP3Q9Y3E7 DLX6-AS1_1.1-201ENST00000621599 180 ntBASIC5.97□□□□□ -1.45
CHMP3Q9Y3E7 Metazoa_SRP.193-201ENST00000622007 277 ntBASIC5.97□□□□□ -1.45
CHMP3Q9Y3E7 AC138965.3-201ENST00000623875 498 ntBASIC5.97□□□□□ -1.45
CHMP3Q9Y3E7 NUDT12-202ENST00000507423 1781 ntTSL 2 BASIC5.97□□□□□ -1.45
CHMP3Q9Y3E7 FAM184A-204ENST00000368475 3392 ntTSL 2 BASIC5.97□□□□□ -1.45
CHMP3Q9Y3E7 B3GNT5-201ENST00000326505 4123 ntAPPRIS P1 TSL 1 (best) BASIC5.97□□□□□ -1.45
CHMP3Q9Y3E7 PTPRO-203ENST00000442921 3030 ntAPPRIS ALT2 TSL 1 (best) BASIC5.97□□□□□ -1.45
CHMP3Q9Y3E7 FANCD2-202ENST00000383807 5102 ntAPPRIS ALT2 TSL 1 (best) BASIC5.97□□□□□ -1.45
CHMP3Q9Y3E7 ENKUR-205ENST00000615958 3294 ntTSL 1 (best) BASIC5.97□□□□□ -1.45
CHMP3Q9Y3E7 NXT2-201ENST00000218004 2692 ntTSL 1 (best) BASIC5.97□□□□□ -1.45
CHMP3Q9Y3E7 PNPT1P2-201ENST00000456768 2050 ntBASIC5.97□□□□□ -1.45
CHMP3Q9Y3E7 KPNA2P1-201ENST00000458289 1591 ntBASIC5.97□□□□□ -1.45
CHMP3Q9Y3E7 DYNC2H1-201ENST00000334267 2984 ntTSL 1 (best) BASIC5.97□□□□□ -1.45
CHMP3Q9Y3E7 PAPPA-AS1-201ENST00000445861 2450 ntBASIC5.97□□□□□ -1.45
Retrieved 100 of 98,524 protein–RNA pairs in 72.4 ms