Protein–RNA interactions for Protein: Q9ULL8

SHROOM4, Protein Shroom4, humanhuman

Predictions only

Length 1,493 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM4Q9ULL8 ARAP2-210ENST00000618163 2592 ntTSL 5 BASIC5.84□□□□□ -1.47
SHROOM4Q9ULL8 POU2F1-204ENST00000367866 13905 ntAPPRIS P3 TSL 1 (best) BASIC5.84□□□□□ -1.47
SHROOM4Q9ULL8 GABRG2-215ENST00000639213 9960 ntTSL 1 (best) BASIC5.84□□□□□ -1.47
SHROOM4Q9ULL8 PPP2R5C-226ENST00000557095 1307 ntTSL 1 (best) BASIC5.84□□□□□ -1.47
SHROOM4Q9ULL8 ARHGAP28-202ENST00000314319 5415 ntAPPRIS P2 TSL 5 BASIC5.84□□□□□ -1.47
SHROOM4Q9ULL8 CNOT6L-201ENST00000504123 8843 ntAPPRIS P1 TSL 2 BASIC5.84□□□□□ -1.47
SHROOM4Q9ULL8 ARHGAP12-201ENST00000311380 4625 ntTSL 1 (best) BASIC5.84□□□□□ -1.47
SHROOM4Q9ULL8 AC007496.3-201ENST00000624987 3443 ntBASIC5.84□□□□□ -1.47
SHROOM4Q9ULL8 QSER1-204ENST00000527788 5052 ntTSL 2 BASIC5.84□□□□□ -1.48
SHROOM4Q9ULL8 TRAJ7-201ENST00000390530 59 ntAPPRIS P1 BASIC5.83□□□□□ -1.48
SHROOM4Q9ULL8 RPL7P30-201ENST00000420888 709 ntBASIC5.83□□□□□ -1.48
SHROOM4Q9ULL8 ZMYM4-AS1-201ENST00000432683 459 ntTSL 2 BASIC5.83□□□□□ -1.48
SHROOM4Q9ULL8 MTND1P32-201ENST00000433043 938 ntBASIC5.83□□□□□ -1.48
SHROOM4Q9ULL8 REG1CP-203ENST00000434852 460 ntTSL 4 BASIC5.83□□□□□ -1.48
SHROOM4Q9ULL8 EXTL2P1-201ENST00000446218 416 ntBASIC5.83□□□□□ -1.48
SHROOM4Q9ULL8 AC034195.1-202ENST00000451031 610 ntTSL 3 BASIC5.83□□□□□ -1.48
SHROOM4Q9ULL8 AL353691.1-201ENST00000451332 387 ntBASIC5.83□□□□□ -1.48
SHROOM4Q9ULL8 AC016751.2-201ENST00000453206 280 ntTSL 5 BASIC5.83□□□□□ -1.48
SHROOM4Q9ULL8 snoU13.4-201ENST00000458916 104 ntBASIC5.83□□□□□ -1.48
SHROOM4Q9ULL8 KLHL6-AS1-201ENST00000491676 503 ntTSL 2 BASIC5.83□□□□□ -1.48
SHROOM4Q9ULL8 AC093297.2-207ENST00000505401 692 ntTSL 3 BASIC5.83□□□□□ -1.48
SHROOM4Q9ULL8 LINC02469-201ENST00000506460 741 ntTSL 3 BASIC5.83□□□□□ -1.48
SHROOM4Q9ULL8 RNU6-150P-201ENST00000516237 95 ntBASIC5.83□□□□□ -1.48
SHROOM4Q9ULL8 RN7SKP244-201ENST00000516513 307 ntBASIC5.83□□□□□ -1.48
SHROOM4Q9ULL8 CBX3P5-201ENST00000552017 521 ntBASIC5.83□□□□□ -1.48
SHROOM4Q9ULL8 AC091903.1-201ENST00000624322 454 ntBASIC5.83□□□□□ -1.48
SHROOM4Q9ULL8 ZNF479-201ENST00000319636 1811 ntAPPRIS P1 TSL 1 (best) BASIC5.83□□□□□ -1.48
SHROOM4Q9ULL8 C6orf10-202ENST00000375015 2173 ntAPPRIS ALT2 TSL 5 BASIC5.83□□□□□ -1.48
SHROOM4Q9ULL8 MBNL1-206ENST00000357472 5256 ntTSL 5 BASIC5.83□□□□□ -1.48
SHROOM4Q9ULL8 MBNL1-223ENST00000498502 5258 ntTSL 5 BASIC5.83□□□□□ -1.48
SHROOM4Q9ULL8 ERBIN-212ENST00000508515 4374 ntTSL 5 BASIC5.83□□□□□ -1.48
SHROOM4Q9ULL8 RNU6-1074P-201ENST00000383995 104 ntBASIC5.83□□□□□ -1.48
SHROOM4Q9ULL8 TRAV39-201ENST00000390466 331 ntAPPRIS P1 BASIC5.83□□□□□ -1.48
SHROOM4Q9ULL8 CYCSP45-201ENST00000402289 315 ntBASIC5.83□□□□□ -1.48
SHROOM4Q9ULL8 BMS1P22-201ENST00000414726 313 ntBASIC5.83□□□□□ -1.48
SHROOM4Q9ULL8 LANCL1-AS1-201ENST00000416344 714 ntTSL 3 BASIC5.83□□□□□ -1.48
SHROOM4Q9ULL8 AC013402.2-201ENST00000424257 437 ntTSL 3 BASIC5.83□□□□□ -1.48
SHROOM4Q9ULL8 AC063976.3-201ENST00000426849 329 ntBASIC5.83□□□□□ -1.48
SHROOM4Q9ULL8 SNRPEP7-201ENST00000438350 220 ntBASIC5.83□□□□□ -1.48
SHROOM4Q9ULL8 VN1R17P-201ENST00000472048 1090 ntBASIC5.83□□□□□ -1.48
SHROOM4Q9ULL8 AC126389.1-201ENST00000477436 290 ntBASIC5.83□□□□□ -1.48
SHROOM4Q9ULL8 AC105185.1-201ENST00000518705 535 ntBASIC5.83□□□□□ -1.48
SHROOM4Q9ULL8 AC239860.2-201ENST00000525886 270 ntBASIC5.83□□□□□ -1.48
SHROOM4Q9ULL8 RGS5-206ENST00000527988 373 ntTSL 1 (best) BASIC5.83□□□□□ -1.48
SHROOM4Q9ULL8 PDCL2P2-201ENST00000533651 189 ntBASIC5.83□□□□□ -1.48
SHROOM4Q9ULL8 CYCSP2-201ENST00000558168 301 ntBASIC5.83□□□□□ -1.48
SHROOM4Q9ULL8 AC090607.4-201ENST00000558192 369 ntTSL 3 BASIC5.83□□□□□ -1.48
SHROOM4Q9ULL8 CASC16-202ENST00000563844 610 ntTSL 3 BASIC5.83□□□□□ -1.48
SHROOM4Q9ULL8 AL354943.1-201ENST00000572103 781 ntBASIC5.83□□□□□ -1.48
SHROOM4Q9ULL8 LINC01900-203ENST00000585185 393 ntTSL 3 BASIC5.83□□□□□ -1.48
SHROOM4Q9ULL8 AL158196.1-201ENST00000616786 434 ntBASIC5.83□□□□□ -1.48
SHROOM4Q9ULL8 DCLRE1A-202ENST00000369305 4241 ntAPPRIS P1 TSL 5 BASIC5.82□□□□□ -1.48
SHROOM4Q9ULL8 SCFD1-207ENST00000544052 2058 ntTSL 2 BASIC5.82□□□□□ -1.48
SHROOM4Q9ULL8 MEI4-201ENST00000602452 4800 ntAPPRIS P1 TSL 5 BASIC5.82□□□□□ -1.48
SHROOM4Q9ULL8 LINC00587-201ENST00000374801 590 ntTSL 1 (best) BASIC5.82□□□□□ -1.48
SHROOM4Q9ULL8 SNORA70B-201ENST00000384210 135 ntBASIC5.82□□□□□ -1.48
SHROOM4Q9ULL8 KRR1-202ENST00000438169 975 ntTSL 1 (best) BASIC5.82□□□□□ -1.48
SHROOM4Q9ULL8 MYCBP2-AS1-202ENST00000448470 333 ntTSL 3 BASIC5.82□□□□□ -1.48
SHROOM4Q9ULL8 AL513422.1-201ENST00000449531 383 ntTSL 2 BASIC5.82□□□□□ -1.48
SHROOM4Q9ULL8 AC010976.1-211ENST00000454503 644 ntTSL 2 BASIC5.82□□□□□ -1.48
SHROOM4Q9ULL8 AC117440.1-201ENST00000474107 571 ntBASIC5.82□□□□□ -1.48
SHROOM4Q9ULL8 NAA50-206ENST00000493454 964 ntTSL 2 BASIC5.82□□□□□ -1.48
SHROOM4Q9ULL8 RPS6P4-201ENST00000494693 758 ntBASIC5.82□□□□□ -1.48
SHROOM4Q9ULL8 KLHL2P1-201ENST00000508691 521 ntBASIC5.82□□□□□ -1.48
SHROOM4Q9ULL8 AC116616.1-201ENST00000508815 366 ntTSL 3 BASIC5.82□□□□□ -1.48
SHROOM4Q9ULL8 RFPL1S-203ENST00000539579 330 ntBASIC5.82□□□□□ -1.48
SHROOM4Q9ULL8 TGIF1P1-201ENST00000558095 802 ntBASIC5.82□□□□□ -1.48
SHROOM4Q9ULL8 AP005901.2-201ENST00000581690 525 ntTSL 3 BASIC5.82□□□□□ -1.48
SHROOM4Q9ULL8 DUXAP11-201ENST00000603858 526 ntBASIC5.82□□□□□ -1.48
SHROOM4Q9ULL8 AC063944.3-201ENST00000609969 533 ntBASIC5.82□□□□□ -1.48
SHROOM4Q9ULL8 AC244472.2-201ENST00000617639 406 ntAPPRIS P1 BASIC5.82□□□□□ -1.48
SHROOM4Q9ULL8 AL022578.1-201ENST00000439330 1433 ntBASIC5.82□□□□□ -1.48
SHROOM4Q9ULL8 TFEC-203ENST00000393485 2704 ntTSL 2 BASIC5.82□□□□□ -1.48
SHROOM4Q9ULL8 ACADM-203ENST00000420607 1332 ntAPPRIS ALT1 TSL 1 (best) BASIC5.81□□□□□ -1.48
SHROOM4Q9ULL8 DNAJC2-201ENST00000249270 1846 ntTSL 1 (best) BASIC5.81□□□□□ -1.48
SHROOM4Q9ULL8 LINC00301-201ENST00000320202 852 ntTSL 2 BASIC5.81□□□□□ -1.48
SHROOM4Q9ULL8 C5orf58-201ENST00000421269 406 ntAPPRIS ALT2 TSL 2 BASIC5.81□□□□□ -1.48
SHROOM4Q9ULL8 CHODL-AS1-201ENST00000447175 1117 ntTSL 2 BASIC5.81□□□□□ -1.48
SHROOM4Q9ULL8 AC068580.2-201ENST00000449749 338 ntTSL 5 BASIC5.81□□□□□ -1.48
SHROOM4Q9ULL8 RPL23AP55-201ENST00000498163 452 ntBASIC5.81□□□□□ -1.48
SHROOM4Q9ULL8 AC025465.2-201ENST00000502809 608 ntTSL 2 BASIC5.81□□□□□ -1.48
SHROOM4Q9ULL8 RNU1-143P-201ENST00000516296 146 ntBASIC5.81□□□□□ -1.48
SHROOM4Q9ULL8 RN7SKP287-201ENST00000516546 266 ntBASIC5.81□□□□□ -1.48
SHROOM4Q9ULL8 LRRTM2-203ENST00000521094 1182 ntTSL 1 (best) BASIC5.81□□□□□ -1.48
SHROOM4Q9ULL8 AP001992.1-204ENST00000525104 687 ntTSL 3 BASIC5.81□□□□□ -1.48
SHROOM4Q9ULL8 AC130371.1-204ENST00000576197 401 ntTSL 3 BASIC5.81□□□□□ -1.48
SHROOM4Q9ULL8 AC025682.1-201ENST00000582389 437 ntTSL 5 BASIC5.81□□□□□ -1.48
SHROOM4Q9ULL8 U1.23-201ENST00000610293 146 ntBASIC5.81□□□□□ -1.48
SHROOM4Q9ULL8 RNU1-68P-201ENST00000615382 146 ntBASIC5.81□□□□□ -1.48
SHROOM4Q9ULL8 AL596245.1-201ENST00000618994 362 ntBASIC5.81□□□□□ -1.48
SHROOM4Q9ULL8 U1.39-201ENST00000621562 146 ntBASIC5.81□□□□□ -1.48
SHROOM4Q9ULL8 CNBD1-202ENST00000518476 1594 ntAPPRIS P2 TSL 1 (best) BASIC5.81□□□□□ -1.48
SHROOM4Q9ULL8 ZMYM1-210ENST00000611874 4466 ntAPPRIS P1 TSL 2 BASIC5.81□□□□□ -1.48
SHROOM4Q9ULL8 SYNE1-207ENST00000367255 27748 ntAPPRIS P4 TSL 1 (best) BASIC5.81□□□□□ -1.48
SHROOM4Q9ULL8 CHM-205ENST00000615443 2821 ntTSL 1 (best) BASIC5.81□□□□□ -1.48
SHROOM4Q9ULL8 LRFN5-204ENST00000554171 4253 ntAPPRIS ALT2 TSL 1 (best) BASIC5.8□□□□□ -1.48
SHROOM4Q9ULL8 ZNF639-206ENST00000484866 1730 ntAPPRIS P1 TSL 2 BASIC5.8□□□□□ -1.48
SHROOM4Q9ULL8 VSTM2A-OT1-201ENST00000456049 3031 ntTSL 1 (best) BASIC5.8□□□□□ -1.48
SHROOM4Q9ULL8 AC010731.3-201ENST00000415029 566 ntTSL 4 BASIC5.8□□□□□ -1.48
SHROOM4Q9ULL8 AC127526.1-201ENST00000417526 366 ntBASIC5.8□□□□□ -1.48
Retrieved 100 of 98,524 protein–RNA pairs in 112.7 ms