Protein–RNA interactions for Protein: Q9UK41

VPS28, Vacuolar protein sorting-associated protein 28 homolog, humanhuman

Predictions only

Length 221 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28Q9UK41 AC098868.1-201ENST00000512628 624 ntTSL 2 BASIC3.67□□□□□ -1.82
VPS28Q9UK41 SNORA70.18-201ENST00000516696 98 ntBASIC3.67□□□□□ -1.82
VPS28Q9UK41 TBCA-206ENST00000518338 551 ntTSL 2 BASIC3.67□□□□□ -1.82
VPS28Q9UK41 AL133271.1-201ENST00000538229 291 ntBASIC3.67□□□□□ -1.82
VPS28Q9UK41 AL133166.1-201ENST00000551040 1034 ntTSL 4 BASIC3.67□□□□□ -1.82
VPS28Q9UK41 AC020978.4-201ENST00000569088 460 ntTSL 3 BASIC3.67□□□□□ -1.82
VPS28Q9UK41 AC012186.2-201ENST00000569353 321 ntTSL 3 BASIC3.67□□□□□ -1.82
VPS28Q9UK41 AC090616.5-201ENST00000581225 299 ntTSL 5 BASIC3.67□□□□□ -1.82
VPS28Q9UK41 KLKP1-201ENST00000595979 403 ntBASIC3.67□□□□□ -1.82
VPS28Q9UK41 AC107214.2-201ENST00000608204 634 ntBASIC3.67□□□□□ -1.82
VPS28Q9UK41 MIR8058-201ENST00000615737 89 ntBASIC3.67□□□□□ -1.82
VPS28Q9UK41 MIR6076-201ENST00000617521 113 ntBASIC3.67□□□□□ -1.82
VPS28Q9UK41 AL591441.2-201ENST00000620059 535 ntTSL 5 BASIC3.67□□□□□ -1.82
VPS28Q9UK41 AL732372.2-225ENST00000642124 456 ntBASIC3.67□□□□□ -1.82
VPS28Q9UK41 USP9Y-201ENST00000338981 10036 ntAPPRIS P1 TSL 1 (best) BASIC3.67□□□□□ -1.82
VPS28Q9UK41 AC008505.1-204ENST00000637363 2714 ntTSL 5 BASIC3.67□□□□□ -1.82
VPS28Q9UK41 SYNE1-201ENST00000341594 26584 ntAPPRIS ALT2 TSL 5 BASIC3.67□□□□□ -1.82
VPS28Q9UK41 CNOT6L-201ENST00000504123 8843 ntAPPRIS P1 TSL 2 BASIC3.67□□□□□ -1.82
VPS28Q9UK41 TUG1-202ENST00000521091 2110 ntTSL 1 (best) BASIC3.67□□□□□ -1.82
VPS28Q9UK41 AC007656.2-201ENST00000624902 4547 ntBASIC3.67□□□□□ -1.82
VPS28Q9UK41 FOXP2-224ENST00000635534 4290 ntTSL 5 BASIC3.67□□□□□ -1.82
VPS28Q9UK41 IL6ST-205ENST00000381294 2574 ntTSL 1 (best) BASIC3.66□□□□□ -1.82
VPS28Q9UK41 AC087521.2-201ENST00000499066 2190 ntTSL 2 BASIC3.66□□□□□ -1.82
VPS28Q9UK41 CEP170-202ENST00000366542 6828 ntAPPRIS P1 TSL 5 BASIC3.66□□□□□ -1.82
VPS28Q9UK41 PTPN22-211ENST00000538253 3575 ntTSL 1 (best) BASIC3.66□□□□□ -1.82
VPS28Q9UK41 PHC3-215ENST00000495893 12666 ntAPPRIS P1 TSL 1 (best) BASIC3.66□□□□□ -1.82
VPS28Q9UK41 MME-201ENST00000360490 2360 ntAPPRIS P1 TSL 1 (best) BASIC3.66□□□□□ -1.82
VPS28Q9UK41 TRIQK-212ENST00000520686 1808 ntAPPRIS P1 TSL 1 (best) BASIC3.66□□□□□ -1.82
VPS28Q9UK41 CADM2-AS1-201ENST00000476021 2656 ntTSL 1 (best) BASIC3.66□□□□□ -1.82
VPS28Q9UK41 RNU6-660P-201ENST00000364566 109 ntBASIC3.66□□□□□ -1.82
VPS28Q9UK41 LINC00862-202ENST00000367356 759 ntTSL 3 BASIC3.66□□□□□ -1.82
VPS28Q9UK41 MEIG1-201ENST00000378240 507 ntAPPRIS P1 TSL 2 BASIC3.66□□□□□ -1.82
VPS28Q9UK41 SNORA1.3-201ENST00000384676 136 ntBASIC3.66□□□□□ -1.82
VPS28Q9UK41 RPS4XP3-201ENST00000398541 413 ntBASIC3.66□□□□□ -1.82
VPS28Q9UK41 BX842559.1-201ENST00000419615 532 ntBASIC3.66□□□□□ -1.82
VPS28Q9UK41 AL031429.1-201ENST00000426775 749 ntTSL 2 BASIC3.66□□□□□ -1.82
VPS28Q9UK41 RPL7L1P10-201ENST00000427790 463 ntBASIC3.66□□□□□ -1.82
VPS28Q9UK41 YME1L1P1-201ENST00000429435 297 ntBASIC3.66□□□□□ -1.82
VPS28Q9UK41 CYCSP4-201ENST00000429682 331 ntBASIC3.66□□□□□ -1.82
VPS28Q9UK41 AL596220.1-202ENST00000429768 314 ntTSL 3 BASIC3.66□□□□□ -1.82
VPS28Q9UK41 LINC01757-201ENST00000435552 480 ntTSL 2 BASIC3.66□□□□□ -1.82
VPS28Q9UK41 RPL21P23-201ENST00000446654 460 ntBASIC3.66□□□□□ -1.82
VPS28Q9UK41 TPT1P14-201ENST00000448018 505 ntBASIC3.66□□□□□ -1.82
VPS28Q9UK41 NEGR1-IT1-201ENST00000453121 534 ntTSL 1 (best) BASIC3.66□□□□□ -1.82
VPS28Q9UK41 AC093297.2-205ENST00000508123 572 ntTSL 3 BASIC3.66□□□□□ -1.82
VPS28Q9UK41 RNU6-840P-201ENST00000517275 65 ntBASIC3.66□□□□□ -1.82
VPS28Q9UK41 RPL12P22-201ENST00000519073 490 ntBASIC3.66□□□□□ -1.82
VPS28Q9UK41 AC103843.2-201ENST00000530523 682 ntBASIC3.66□□□□□ -1.82
VPS28Q9UK41 OR5B10P-201ENST00000532869 642 ntBASIC3.66□□□□□ -1.82
VPS28Q9UK41 LINC00508-201ENST00000538901 194 ntTSL 5 BASIC3.66□□□□□ -1.82
VPS28Q9UK41 AC007954.1-201ENST00000554198 494 ntBASIC3.66□□□□□ -1.82
VPS28Q9UK41 AL163153.1-201ENST00000554223 283 ntBASIC3.66□□□□□ -1.82
VPS28Q9UK41 MEG8-218ENST00000556720 456 ntTSL 3 BASIC3.66□□□□□ -1.82
VPS28Q9UK41 LINC02311-202ENST00000556819 477 ntTSL 3 BASIC3.66□□□□□ -1.82
VPS28Q9UK41 MIR3922-201ENST00000585192 84 ntBASIC3.66□□□□□ -1.82
VPS28Q9UK41 AL353778.1-201ENST00000603149 408 ntBASIC3.66□□□□□ -1.82
VPS28Q9UK41 Z99289.3-201ENST00000605586 594 ntBASIC3.66□□□□□ -1.82
VPS28Q9UK41 AC091965.4-201ENST00000607691 587 ntBASIC3.66□□□□□ -1.82
VPS28Q9UK41 MIR7851-201ENST00000610611 160 ntBASIC3.66□□□□□ -1.82
VPS28Q9UK41 AC006111.3-201ENST00000622137 383 ntBASIC3.66□□□□□ -1.82
VPS28Q9UK41 AL357559.1-201ENST00000622228 274 ntBASIC3.66□□□□□ -1.82
VPS28Q9UK41 AP003355.3-201ENST00000623465 114 ntBASIC3.66□□□□□ -1.82
VPS28Q9UK41 AC091965.5-201ENST00000624785 342 ntBASIC3.66□□□□□ -1.82
VPS28Q9UK41 FASTKD1-205ENST00000453929 2791 ntTSL 2 BASIC3.66□□□□□ -1.82
VPS28Q9UK41 MTND5P33-201ENST00000571250 1450 ntBASIC3.66□□□□□ -1.82
VPS28Q9UK41 CEP44-201ENST00000296519 4173 ntAPPRIS P1 TSL 1 (best) BASIC3.66□□□□□ -1.82
VPS28Q9UK41 AC092125.1-201ENST00000562568 1995 ntBASIC3.65□□□□□ -1.82
VPS28Q9UK41 RNA5SP119-201ENST00000362715 117 ntBASIC3.65□□□□□ -1.83
VPS28Q9UK41 RNU6-223P-201ENST00000362830 107 ntBASIC3.65□□□□□ -1.83
VPS28Q9UK41 ESD-201ENST00000378697 1079 ntTSL 5 BASIC3.65□□□□□ -1.83
VPS28Q9UK41 SNORA36C-201ENST00000384289 132 ntBASIC3.65□□□□□ -1.83
VPS28Q9UK41 MIR7-3-201ENST00000384898 110 ntBASIC3.65□□□□□ -1.83
VPS28Q9UK41 AC018630.2-202ENST00000422992 927 ntBASIC3.65□□□□□ -1.83
VPS28Q9UK41 F10-AS1-201ENST00000424635 417 ntTSL 5 BASIC3.65□□□□□ -1.83
VPS28Q9UK41 AC008850.1-201ENST00000427546 362 ntBASIC3.65□□□□□ -1.83
VPS28Q9UK41 AL590383.1-201ENST00000428602 75 ntBASIC3.65□□□□□ -1.83
VPS28Q9UK41 ARF4P2-201ENST00000430209 526 ntBASIC3.65□□□□□ -1.83
VPS28Q9UK41 AL138916.1-201ENST00000436295 455 ntTSL 3 BASIC3.65□□□□□ -1.83
VPS28Q9UK41 RPL7P36-201ENST00000444633 681 ntBASIC3.65□□□□□ -1.83
VPS28Q9UK41 AC079354.3-201ENST00000447111 311 ntTSL 2 BASIC3.65□□□□□ -1.83
VPS28Q9UK41 AL355314.1-201ENST00000453639 316 ntTSL 5 BASIC3.65□□□□□ -1.83
VPS28Q9UK41 TBL1XR1-AS1-201ENST00000454723 414 ntTSL 5 BASIC3.65□□□□□ -1.83
VPS28Q9UK41 AL136097.1-201ENST00000456945 913 ntBASIC3.65□□□□□ -1.83
VPS28Q9UK41 AL049874.1-201ENST00000489560 388 ntBASIC3.65□□□□□ -1.83
VPS28Q9UK41 AC110768.1-201ENST00000509222 400 ntBASIC3.65□□□□□ -1.83
VPS28Q9UK41 GMPSP1-201ENST00000514075 579 ntBASIC3.65□□□□□ -1.83
VPS28Q9UK41 DUXAP2-201ENST00000519198 589 ntBASIC3.65□□□□□ -1.83
VPS28Q9UK41 CCDC179-202ENST00000532798 791 ntAPPRIS P1 TSL 2 BASIC3.65□□□□□ -1.83
VPS28Q9UK41 OR4T1P-201ENST00000554933 911 ntBASIC3.65□□□□□ -1.83
VPS28Q9UK41 TIMM9-208ENST00000556007 746 ntTSL 3 BASIC3.65□□□□□ -1.83
VPS28Q9UK41 AC074050.1-201ENST00000563247 211 ntBASIC3.65□□□□□ -1.83
VPS28Q9UK41 CCDC178-211ENST00000581852 876 ntAPPRIS ALT2 TSL 2 BASIC3.65□□□□□ -1.83
VPS28Q9UK41 AC022601.1-201ENST00000596954 577 ntTSL 4 BASIC3.65□□□□□ -1.83
VPS28Q9UK41 AC068313.1-201ENST00000604028 1008 ntBASIC3.65□□□□□ -1.83
VPS28Q9UK41 AC092142.2-201ENST00000614642 354 ntTSL 3 BASIC3.65□□□□□ -1.83
VPS28Q9UK41 U4.6-201ENST00000621618 127 ntBASIC3.65□□□□□ -1.83
VPS28Q9UK41 AP000676.3-201ENST00000623299 569 ntBASIC3.65□□□□□ -1.83
VPS28Q9UK41 SATB1-AS1-227ENST00000625533 743 ntTSL 5 BASIC3.65□□□□□ -1.83
VPS28Q9UK41 AGTR1-206ENST00000474935 1795 ntAPPRIS P1 TSL 3 BASIC3.65□□□□□ -1.83
VPS28Q9UK41 TLR10-206ENST00000508334 2616 ntAPPRIS P1 TSL 1 (best) BASIC3.65□□□□□ -1.83
Retrieved 100 of 98,524 protein–RNA pairs in 135.7 ms