Protein–RNA interactions for Protein: Q9UGP4

LIMD1, LIM domain-containing protein 1, humanhuman

Predictions only

Length 676 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMD1Q9UGP4 SKP1-209ENST00000522552 1683 ntAPPRIS ALT1 TSL 1 (best) BASIC5.98□□□□□ -1.45
LIMD1Q9UGP4 MATR3-230ENST00000394800 5513 ntTSL 5 BASIC5.97□□□□□ -1.45
LIMD1Q9UGP4 MID2-202ENST00000443968 2251 ntAPPRIS P1 TSL 1 (best) BASIC5.97□□□□□ -1.45
LIMD1Q9UGP4 RGS22-214ENST00000523287 4033 ntAPPRIS ALT2 TSL 2 BASIC5.97□□□□□ -1.45
LIMD1Q9UGP4 NOS1-201ENST00000317775 12158 ntAPPRIS P1 TSL 1 (best) BASIC5.97□□□□□ -1.45
LIMD1Q9UGP4 DYTN-201ENST00000452335 2051 ntAPPRIS P1 TSL 1 (best) BASIC5.97□□□□□ -1.45
LIMD1Q9UGP4 KIAA0586-203ENST00000423743 5339 ntAPPRIS ALT2 TSL 1 (best) BASIC5.97□□□□□ -1.45
LIMD1Q9UGP4 DROSHA-212ENST00000511367 5305 ntAPPRIS P4 TSL 1 (best) BASIC5.97□□□□□ -1.45
LIMD1Q9UGP4 CUBN-202ENST00000377833 11949 ntAPPRIS P1 TSL 1 (best) BASIC5.97□□□□□ -1.45
LIMD1Q9UGP4 RPL23P2-201ENST00000320371 421 ntBASIC5.97□□□□□ -1.45
LIMD1Q9UGP4 GTSF1L-201ENST00000373003 835 ntAPPRIS P3 BASIC5.97□□□□□ -1.45
LIMD1Q9UGP4 MIR765-201ENST00000390226 114 ntBASIC5.97□□□□□ -1.45
LIMD1Q9UGP4 TRGV5-201ENST00000390344 552 ntAPPRIS P1 BASIC5.97□□□□□ -1.45
LIMD1Q9UGP4 RNU1-77P-201ENST00000390868 162 ntBASIC5.97□□□□□ -1.45
LIMD1Q9UGP4 Y_RNA.592-201ENST00000410274 109 ntBASIC5.97□□□□□ -1.45
LIMD1Q9UGP4 RNU2-25P-201ENST00000411041 191 ntBASIC5.97□□□□□ -1.45
LIMD1Q9UGP4 MTATP6P4-201ENST00000427725 675 ntBASIC5.97□□□□□ -1.45
LIMD1Q9UGP4 AL592045.1-201ENST00000429867 352 ntBASIC5.97□□□□□ -1.45
LIMD1Q9UGP4 RPEP5-201ENST00000441137 268 ntBASIC5.97□□□□□ -1.45
LIMD1Q9UGP4 CEACAMP7-201ENST00000444105 496 ntBASIC5.97□□□□□ -1.45
LIMD1Q9UGP4 AL392103.1-201ENST00000447000 198 ntBASIC5.97□□□□□ -1.45
LIMD1Q9UGP4 UBE2Q2P9-201ENST00000490086 202 ntBASIC5.97□□□□□ -1.45
LIMD1Q9UGP4 LINC02494-201ENST00000509824 427 ntTSL 3 BASIC5.97□□□□□ -1.45
LIMD1Q9UGP4 LINC01598-206ENST00000513381 499 ntTSL 4 BASIC5.97□□□□□ -1.45
LIMD1Q9UGP4 AP001284.1-201ENST00000528393 2118 ntBASIC5.97□□□□□ -1.45
LIMD1Q9UGP4 G2E3-AS1-202ENST00000550118 609 ntTSL 5 BASIC5.97□□□□□ -1.45
LIMD1Q9UGP4 AL161713.1-201ENST00000555538 145 ntBASIC5.97□□□□□ -1.45
LIMD1Q9UGP4 AMZ2P1-203ENST00000565833 850 ntBASIC5.97□□□□□ -1.45
LIMD1Q9UGP4 AC119868.1-202ENST00000584741 347 ntTSL 2 BASIC5.97□□□□□ -1.45
LIMD1Q9UGP4 STX3-208ENST00000641815 3236 ntBASIC5.97□□□□□ -1.45
LIMD1Q9UGP4 ATPAF1-212ENST00000542495 1779 ntTSL 2 BASIC5.97□□□□□ -1.45
LIMD1Q9UGP4 TTC21B-201ENST00000243344 5482 ntAPPRIS P1 TSL 1 (best) BASIC5.97□□□□□ -1.45
LIMD1Q9UGP4 PTPRD-214ENST00000540109 6210 ntAPPRIS P1 TSL 5 BASIC5.97□□□□□ -1.45
LIMD1Q9UGP4 ZMAT1-201ENST00000372782 3185 ntAPPRIS P1 TSL 1 (best) BASIC5.97□□□□□ -1.45
LIMD1Q9UGP4 EPB41L2-220ENST00000528282 3663 ntAPPRIS ALT2 TSL 1 (best) BASIC5.97□□□□□ -1.45
LIMD1Q9UGP4 C15orf54-202ENST00000625107 3078 ntTSL 1 (best) BASIC5.97□□□□□ -1.45
LIMD1Q9UGP4 SLC39A12-201ENST00000377369 2808 ntAPPRIS ALT1 TSL 1 (best) BASIC5.97□□□□□ -1.45
LIMD1Q9UGP4 MYBPC1-209ENST00000547509 3749 ntAPPRIS ALT2 TSL 5 BASIC5.97□□□□□ -1.45
LIMD1Q9UGP4 EPC2-201ENST00000258484 3649 ntAPPRIS P1 TSL 1 (best) BASIC5.97□□□□□ -1.45
LIMD1Q9UGP4 TTI1-203ENST00000449821 3791 ntAPPRIS P1 TSL 2 BASIC5.96□□□□□ -1.46
LIMD1Q9UGP4 FMN2-207ENST00000545751 1913 ntTSL 5 BASIC5.96□□□□□ -1.46
LIMD1Q9UGP4 Y_RNA.29-201ENST00000362570 113 ntBASIC5.96□□□□□ -1.46
LIMD1Q9UGP4 Y_RNA.33-201ENST00000362591 102 ntBASIC5.96□□□□□ -1.46
LIMD1Q9UGP4 RNU6-1317P-201ENST00000364582 104 ntBASIC5.96□□□□□ -1.46
LIMD1Q9UGP4 RNA5SP211-201ENST00000365516 117 ntBASIC5.96□□□□□ -1.46
LIMD1Q9UGP4 GNG5P2-201ENST00000372054 207 ntBASIC5.96□□□□□ -1.46
LIMD1Q9UGP4 CLDN10-202ENST00000376855 701 ntTSL 2 BASIC5.96□□□□□ -1.46
LIMD1Q9UGP4 RNU6-356P-201ENST00000384140 107 ntBASIC5.96□□□□□ -1.46
LIMD1Q9UGP4 AL645733.1-201ENST00000402250 217 ntBASIC5.96□□□□□ -1.46
LIMD1Q9UGP4 HIST1H3PS1-201ENST00000404612 417 ntBASIC5.96□□□□□ -1.46
LIMD1Q9UGP4 RNU6ATAC18P-201ENST00000408413 101 ntBASIC5.96□□□□□ -1.46
LIMD1Q9UGP4 RN7SKP106-201ENST00000410832 272 ntBASIC5.96□□□□□ -1.46
LIMD1Q9UGP4 CYCSP6-201ENST00000434498 302 ntBASIC5.96□□□□□ -1.46
LIMD1Q9UGP4 AC092573.2-201ENST00000434546 243 ntBASIC5.96□□□□□ -1.46
LIMD1Q9UGP4 TRAPPC2P9-201ENST00000434556 343 ntBASIC5.96□□□□□ -1.46
LIMD1Q9UGP4 ARHGEF7-AS1-201ENST00000435037 321 ntTSL 3 BASIC5.96□□□□□ -1.46
LIMD1Q9UGP4 AC004938.1-201ENST00000438468 308 ntBASIC5.96□□□□□ -1.46
LIMD1Q9UGP4 AL663074.2-201ENST00000440621 479 ntBASIC5.96□□□□□ -1.46
LIMD1Q9UGP4 NDUFB1P2-201ENST00000449477 176 ntBASIC5.96□□□□□ -1.46
LIMD1Q9UGP4 AL450023.1-201ENST00000450868 751 ntBASIC5.96□□□□□ -1.46
LIMD1Q9UGP4 AL359715.2-201ENST00000452402 682 ntTSL 2 BASIC5.96□□□□□ -1.46
LIMD1Q9UGP4 RPL7P5-201ENST00000471472 736 ntBASIC5.96□□□□□ -1.46
LIMD1Q9UGP4 RN7SL222P-201ENST00000476452 299 ntBASIC5.96□□□□□ -1.46
LIMD1Q9UGP4 RPL30P10-201ENST00000488148 337 ntBASIC5.96□□□□□ -1.46
LIMD1Q9UGP4 AC016651.1-201ENST00000502680 822 ntTSL 3 BASIC5.96□□□□□ -1.46
LIMD1Q9UGP4 SUMO2P6-201ENST00000505273 288 ntBASIC5.96□□□□□ -1.46
LIMD1Q9UGP4 AC110767.1-201ENST00000508374 239 ntTSL 3 BASIC5.96□□□□□ -1.46
LIMD1Q9UGP4 RNU5B-3P-201ENST00000516601 115 ntBASIC5.96□□□□□ -1.46
LIMD1Q9UGP4 AP003123.1-201ENST00000526041 333 ntTSL 2 BASIC5.96□□□□□ -1.46
LIMD1Q9UGP4 PIGY-201ENST00000527353 217 ntAPPRIS P1 BASIC5.96□□□□□ -1.46
LIMD1Q9UGP4 TRAV37-201ENST00000553906 342 ntBASIC5.96□□□□□ -1.46
LIMD1Q9UGP4 AL359237.1-202ENST00000556168 487 ntTSL 5 BASIC5.96□□□□□ -1.46
LIMD1Q9UGP4 AC126323.6-201ENST00000561701 451 ntTSL 3 BASIC5.96□□□□□ -1.46
LIMD1Q9UGP4 LINC00906-206ENST00000589921 3444 ntTSL 1 (best) BASIC5.96□□□□□ -1.46
LIMD1Q9UGP4 DCN-218ENST00000551354 2924 ntTSL 3 BASIC5.96□□□□□ -1.46
LIMD1Q9UGP4 GTDC1-206ENST00000409214 2954 ntAPPRIS P1 TSL 1 (best) BASIC5.96□□□□□ -1.46
LIMD1Q9UGP4 RALGAPA1-202ENST00000382366 6328 ntTSL 1 (best) BASIC5.96□□□□□ -1.46
LIMD1Q9UGP4 CLSPN-203ENST00000373220 3977 ntAPPRIS ALT2 TSL 1 (best) BASIC5.96□□□□□ -1.46
LIMD1Q9UGP4 AC023421.1-201ENST00000590535 1785 ntBASIC5.95□□□□□ -1.46
LIMD1Q9UGP4 TRIM69-201ENST00000329464 1901 ntAPPRIS P1 TSL 1 (best) BASIC5.95□□□□□ -1.46
LIMD1Q9UGP4 OR4S2-202ENST00000641692 2211 ntAPPRIS P1 BASIC5.95□□□□□ -1.46
LIMD1Q9UGP4 RGSL1-201ENST00000294854 3696 ntAPPRIS P1 TSL 1 (best) BASIC5.95□□□□□ -1.46
LIMD1Q9UGP4 YWHAZ-201ENST00000353245 2829 ntAPPRIS P1 TSL 1 (best) BASIC5.95□□□□□ -1.46
LIMD1Q9UGP4 AC090971.4-201ENST00000560291 1800 ntBASIC5.95□□□□□ -1.46
LIMD1Q9UGP4 GABRA1-215ENST00000636573 2262 ntAPPRIS P1 TSL 5 BASIC5.95□□□□□ -1.46
LIMD1Q9UGP4 MCM10-202ENST00000378714 4547 ntAPPRIS ALT2 TSL 1 (best) BASIC5.95□□□□□ -1.46
LIMD1Q9UGP4 RNU1-35P-201ENST00000362782 153 ntBASIC5.95□□□□□ -1.46
LIMD1Q9UGP4 U8.4-201ENST00000363626 134 ntBASIC5.95□□□□□ -1.46
LIMD1Q9UGP4 Y_RNA.180-201ENST00000363867 113 ntBASIC5.95□□□□□ -1.46
LIMD1Q9UGP4 SNORA51.8-201ENST00000384234 132 ntBASIC5.95□□□□□ -1.46
LIMD1Q9UGP4 MIR521-1-201ENST00000384902 87 ntBASIC5.95□□□□□ -1.46
LIMD1Q9UGP4 TRAJ34-201ENST00000390503 58 ntAPPRIS P1 BASIC5.95□□□□□ -1.46
LIMD1Q9UGP4 MTCYBP2-201ENST00000407745 171 ntBASIC5.95□□□□□ -1.46
LIMD1Q9UGP4 U3.42-201ENST00000408746 214 ntBASIC5.95□□□□□ -1.46
LIMD1Q9UGP4 Z86062.2-201ENST00000411442 380 ntTSL 5 BASIC5.95□□□□□ -1.46
LIMD1Q9UGP4 EI24P1-201ENST00000416584 867 ntBASIC5.95□□□□□ -1.46
LIMD1Q9UGP4 DPPA2P2-201ENST00000418220 897 ntBASIC5.95□□□□□ -1.46
LIMD1Q9UGP4 RNF150-202ENST00000420921 3673 ntTSL 2 BASIC5.95□□□□□ -1.46
LIMD1Q9UGP4 AL159987.2-201ENST00000432754 307 ntBASIC5.95□□□□□ -1.46
LIMD1Q9UGP4 RPS18P6-201ENST00000476880 458 ntBASIC5.95□□□□□ -1.46
Retrieved 100 of 98,524 protein–RNA pairs in 100.8 ms