Protein–RNA interactions for Protein: Q9NVE4

CCDC87, Coiled-coil domain-containing protein 87, humanhuman

Predictions only

Length 849 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC87Q9NVE4 CASP1-217ENST00000640184 327 ntTSL 1 (best) BASIC5.78□□□□□ -1.48
CCDC87Q9NVE4 ZBED6-201ENST00000545588 7979 ntTSL 1 (best) BASIC5.78□□□□□ -1.48
CCDC87Q9NVE4 AC121333.1-201ENST00000567488 2709 ntBASIC5.78□□□□□ -1.48
CCDC87Q9NVE4 OR56A1-202ENST00000641423 6096 ntAPPRIS P1 BASIC5.78□□□□□ -1.48
CCDC87Q9NVE4 LUZP2-207ENST00000533227 5016 ntTSL 1 (best) BASIC5.78□□□□□ -1.48
CCDC87Q9NVE4 ATP8B4-211ENST00000559829 4894 ntAPPRIS P1 TSL 5 BASIC5.78□□□□□ -1.48
CCDC87Q9NVE4 ST7-AS2-206ENST00000456577 1351 ntTSL 1 (best) BASIC5.78□□□□□ -1.48
CCDC87Q9NVE4 AC244517.1-201ENST00000606030 2086 ntBASIC5.78□□□□□ -1.48
CCDC87Q9NVE4 EIF2AP4-201ENST00000424793 1781 ntBASIC5.78□□□□□ -1.48
CCDC87Q9NVE4 AMY2B-201ENST00000361355 2181 ntAPPRIS P1 TSL 1 (best) BASIC5.77□□□□□ -1.49
CCDC87Q9NVE4 PTPRD-213ENST00000537002 8224 ntTSL 1 (best) BASIC5.77□□□□□ -1.49
CCDC87Q9NVE4 ABI1-210ENST00000376170 3362 ntTSL 1 (best) BASIC5.77□□□□□ -1.49
CCDC87Q9NVE4 AL445487.1-201ENST00000415694 1580 ntBASIC5.77□□□□□ -1.49
CCDC87Q9NVE4 ZNF334-203ENST00000593880 2635 ntTSL 1 (best) BASIC5.77□□□□□ -1.49
CCDC87Q9NVE4 RNU6-82P-201ENST00000363970 107 ntBASIC5.77□□□□□ -1.49
CCDC87Q9NVE4 Y_RNA.202-201ENST00000364083 110 ntBASIC5.77□□□□□ -1.49
CCDC87Q9NVE4 RNU1-132P-201ENST00000364300 164 ntBASIC5.77□□□□□ -1.49
CCDC87Q9NVE4 PARD3-204ENST00000374768 799 ntTSL 3 BASIC5.77□□□□□ -1.49
CCDC87Q9NVE4 DEFB134-201ENST00000382205 314 ntAPPRIS P1 TSL 1 (best) BASIC5.77□□□□□ -1.49
CCDC87Q9NVE4 RNU6-339P-201ENST00000384310 107 ntBASIC5.77□□□□□ -1.49
CCDC87Q9NVE4 MIR554-201ENST00000384874 96 ntBASIC5.77□□□□□ -1.49
CCDC87Q9NVE4 AL592114.1-201ENST00000403842 483 ntBASIC5.77□□□□□ -1.49
CCDC87Q9NVE4 RNA5SP44-201ENST00000410446 133 ntBASIC5.77□□□□□ -1.49
CCDC87Q9NVE4 RNU6-387P-201ENST00000411331 105 ntBASIC5.77□□□□□ -1.49
CCDC87Q9NVE4 AC008065.1-201ENST00000428525 348 ntBASIC5.77□□□□□ -1.49
CCDC87Q9NVE4 AC004938.1-201ENST00000438468 308 ntBASIC5.77□□□□□ -1.49
CCDC87Q9NVE4 DHFRP3-201ENST00000455595 559 ntBASIC5.77□□□□□ -1.49
CCDC87Q9NVE4 AC245028.2-201ENST00000458673 253 ntBASIC5.77□□□□□ -1.49
CCDC87Q9NVE4 RNU6-1208P-201ENST00000459588 107 ntBASIC5.77□□□□□ -1.49
CCDC87Q9NVE4 Y_RNA.654-201ENST00000497848 106 ntBASIC5.77□□□□□ -1.49
CCDC87Q9NVE4 AC010468.2-201ENST00000511981 438 ntTSL 2 BASIC5.77□□□□□ -1.49
CCDC87Q9NVE4 RNU6-64P-201ENST00000517119 105 ntBASIC5.77□□□□□ -1.49
CCDC87Q9NVE4 TRAV8-5-201ENST00000537369 341 ntBASIC5.77□□□□□ -1.49
CCDC87Q9NVE4 RERG-IT1-201ENST00000539734 301 ntTSL 3 BASIC5.77□□□□□ -1.49
CCDC87Q9NVE4 MIR4444-1-201ENST00000581696 74 ntBASIC5.77□□□□□ -1.49
CCDC87Q9NVE4 MIR4444-2-201ENST00000584390 74 ntBASIC5.77□□□□□ -1.49
CCDC87Q9NVE4 POLR3GP2-201ENST00000588366 668 ntBASIC5.77□□□□□ -1.49
CCDC87Q9NVE4 AL662844.3-201ENST00000606909 517 ntTSL 5 BASIC5.77□□□□□ -1.49
CCDC87Q9NVE4 AC011155.2-201ENST00000623202 216 ntBASIC5.77□□□□□ -1.49
CCDC87Q9NVE4 AC055839.1-201ENST00000634467 498 ntBASIC5.77□□□□□ -1.49
CCDC87Q9NVE4 COA1-220ENST00000640232 192 ntAPPRIS ALT2 TSL 3 BASIC5.77□□□□□ -1.49
CCDC87Q9NVE4 ZFX-203ENST00000379177 7558 ntAPPRIS P1 TSL 1 (best) BASIC5.77□□□□□ -1.49
CCDC87Q9NVE4 PSG8-202ENST00000401467 1686 ntTSL 5 BASIC5.77□□□□□ -1.49
CCDC87Q9NVE4 AC116667.1-201ENST00000604855 2072 ntBASIC5.77□□□□□ -1.49
CCDC87Q9NVE4 AL672167.1-205ENST00000641112 3080 ntBASIC5.77□□□□□ -1.49
CCDC87Q9NVE4 KIF15-203ENST00000425755 3460 ntTSL 5 BASIC5.76□□□□□ -1.49
CCDC87Q9NVE4 CLCN5-202ENST00000376088 10108 ntTSL 2 BASIC5.76□□□□□ -1.49
CCDC87Q9NVE4 RLIM-201ENST00000332687 8317 ntAPPRIS P1 TSL 1 (best) BASIC5.76□□□□□ -1.49
CCDC87Q9NVE4 CDK15-204ENST00000450471 3659 ntAPPRIS ALT1 TSL 1 (best) BASIC5.76□□□□□ -1.49
CCDC87Q9NVE4 PRUNE2-207ENST00000428286 12437 ntTSL 5 BASIC5.76□□□□□ -1.49
CCDC87Q9NVE4 GTDC1-202ENST00000344850 2607 ntAPPRIS P1 TSL 5 BASIC5.76□□□□□ -1.49
CCDC87Q9NVE4 AL499616.1-201ENST00000415437 2633 ntTSL 2 BASIC5.76□□□□□ -1.49
CCDC87Q9NVE4 MTCO1P9-201ENST00000505577 1534 ntBASIC5.76□□□□□ -1.49
CCDC87Q9NVE4 TRAV26-1-201ENST00000390455 537 ntAPPRIS P1 BASIC5.76□□□□□ -1.49
CCDC87Q9NVE4 RNA5SP107-201ENST00000411358 122 ntBASIC5.76□□□□□ -1.49
CCDC87Q9NVE4 RPL30P3-201ENST00000424262 333 ntBASIC5.76□□□□□ -1.49
CCDC87Q9NVE4 MOBP-206ENST00000428261 561 ntAPPRIS ALT2 TSL 4 BASIC5.76□□□□□ -1.49
CCDC87Q9NVE4 AL138759.1-201ENST00000432120 645 ntTSL 2 BASIC5.76□□□□□ -1.49
CCDC87Q9NVE4 AC005094.1-201ENST00000440420 368 ntBASIC5.76□□□□□ -1.49
CCDC87Q9NVE4 AL050349.1-201ENST00000441029 401 ntTSL 2 BASIC5.76□□□□□ -1.49
CCDC87Q9NVE4 LINC01038-201ENST00000457858 428 ntTSL 3 BASIC5.76□□□□□ -1.49
CCDC87Q9NVE4 Y_RNA.631-201ENST00000459607 101 ntBASIC5.76□□□□□ -1.49
CCDC87Q9NVE4 RN7SL542P-201ENST00000467147 294 ntBASIC5.76□□□□□ -1.49
CCDC87Q9NVE4 AC087385.1-201ENST00000475062 312 ntBASIC5.76□□□□□ -1.49
CCDC87Q9NVE4 RPS27AP1-201ENST00000475545 471 ntBASIC5.76□□□□□ -1.49
CCDC87Q9NVE4 LINC01327-201ENST00000498413 535 ntTSL 3 BASIC5.76□□□□□ -1.49
CCDC87Q9NVE4 AC096733.1-201ENST00000503844 402 ntTSL 3 BASIC5.76□□□□□ -1.49
CCDC87Q9NVE4 AC107398.2-201ENST00000508081 601 ntTSL 5 BASIC5.76□□□□□ -1.49
CCDC87Q9NVE4 AC106744.2-202ENST00000515123 448 ntTSL 3 BASIC5.76□□□□□ -1.49
CCDC87Q9NVE4 RN7SKP277-201ENST00000516895 283 ntBASIC5.76□□□□□ -1.49
CCDC87Q9NVE4 AC100801.1-202ENST00000518266 371 ntTSL 3 BASIC5.76□□□□□ -1.49
CCDC87Q9NVE4 AL137161.1-201ENST00000532231 390 ntBASIC5.76□□□□□ -1.49
CCDC87Q9NVE4 LINC02390-201ENST00000541404 560 ntTSL 4 BASIC5.76□□□□□ -1.49
CCDC87Q9NVE4 LINC01405-202ENST00000547607 674 ntTSL 3 BASIC5.76□□□□□ -1.49
CCDC87Q9NVE4 CYCSP40-201ENST00000575927 294 ntBASIC5.76□□□□□ -1.49
CCDC87Q9NVE4 HTN1-205ENST00000610341 536 ntAPPRIS P1 TSL 1 (best) BASIC5.76□□□□□ -1.49
CCDC87Q9NVE4 AC007546.1-201ENST00000619452 559 ntBASIC5.76□□□□□ -1.49
CCDC87Q9NVE4 AC025034.2-201ENST00000623264 286 ntBASIC5.76□□□□□ -1.49
CCDC87Q9NVE4 AL136313.1-201ENST00000624804 202 ntBASIC5.76□□□□□ -1.49
CCDC87Q9NVE4 MIR4496-201ENST00000635896 61 ntBASIC5.76□□□□□ -1.49
CCDC87Q9NVE4 ZNF429-209ENST00000618549 1889 ntTSL 5 BASIC5.76□□□□□ -1.49
CCDC87Q9NVE4 CFAP47-203ENST00000378653 9943 ntAPPRIS P2 TSL 5 BASIC5.76□□□□□ -1.49
CCDC87Q9NVE4 AC027287.1-201ENST00000553115 1453 ntBASIC5.76□□□□□ -1.49
CCDC87Q9NVE4 OMG-201ENST00000247271 1947 ntAPPRIS P1 TSL 1 (best) BASIC5.76□□□□□ -1.49
CCDC87Q9NVE4 CPHL1P-201ENST00000461341 3407 ntBASIC5.76□□□□□ -1.49
CCDC87Q9NVE4 USP8-201ENST00000307179 4243 ntAPPRIS P1 TSL 1 (best) BASIC5.75□□□□□ -1.49
CCDC87Q9NVE4 KIF21A-201ENST00000361418 5044 ntAPPRIS P1 TSL 1 (best) BASIC5.75□□□□□ -1.49
CCDC87Q9NVE4 CENPI-202ENST00000372927 3262 ntAPPRIS P3 TSL 5 BASIC5.75□□□□□ -1.49
CCDC87Q9NVE4 SYT14-206ENST00000537238 5208 ntAPPRIS ALT2 TSL 5 BASIC5.75□□□□□ -1.49
CCDC87Q9NVE4 POSTN-210ENST00000541481 3113 ntTSL 1 (best) BASIC5.75□□□□□ -1.49
CCDC87Q9NVE4 AC069228.1-201ENST00000546936 1615 ntTSL 3 BASIC5.75□□□□□ -1.49
CCDC87Q9NVE4 SNORA70.4-201ENST00000365509 134 ntBASIC5.75□□□□□ -1.49
CCDC87Q9NVE4 FAM206A-202ENST00000374624 499 ntTSL 3 BASIC5.75□□□□□ -1.49
CCDC87Q9NVE4 RNU6-637P-201ENST00000384050 107 ntBASIC5.75□□□□□ -1.49
CCDC87Q9NVE4 AL109755.1-201ENST00000401791 649 ntBASIC5.75□□□□□ -1.49
CCDC87Q9NVE4 RNU2-36P-201ENST00000410361 191 ntBASIC5.75□□□□□ -1.49
CCDC87Q9NVE4 AC133106.1-201ENST00000419029 397 ntTSL 3 BASIC5.75□□□□□ -1.49
CCDC87Q9NVE4 GNG5P5-201ENST00000420444 220 ntBASIC5.75□□□□□ -1.49
CCDC87Q9NVE4 RPL12P46-201ENST00000436610 195 ntBASIC5.75□□□□□ -1.49
CCDC87Q9NVE4 AL589765.1-201ENST00000457548 386 ntTSL 2 BASIC5.75□□□□□ -1.49
Retrieved 100 of 98,524 protein–RNA pairs in 95.4 ms