Protein–RNA interactions for Protein: P78317

RNF4, E3 ubiquitin-protein ligase RNF4, humanhuman

Predictions only

Length 190 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4P78317 HSPA8P4-201ENST00000511877 1920 ntBASIC4.76□□□□□ -1.65
RNF4P78317 AC116667.1-201ENST00000604855 2072 ntBASIC4.76□□□□□ -1.65
RNF4P78317 LIMA1-212ENST00000552491 2652 ntAPPRIS ALT2 TSL 2 BASIC4.76□□□□□ -1.65
RNF4P78317 ARHGEF6-203ENST00000370622 4779 ntTSL 1 (best) BASIC4.76□□□□□ -1.65
RNF4P78317 SNURFL-201ENST00000309296 343 ntBASIC4.76□□□□□ -1.65
RNF4P78317 AC117470.1-201ENST00000381974 330 ntBASIC4.76□□□□□ -1.65
RNF4P78317 Y_RNA.399-201ENST00000383955 105 ntBASIC4.76□□□□□ -1.65
RNF4P78317 MIR568-201ENST00000385036 95 ntBASIC4.76□□□□□ -1.65
RNF4P78317 SF3B1-202ENST00000409915 600 ntTSL 2 BASIC4.76□□□□□ -1.65
RNF4P78317 RN7SKP114-201ENST00000410327 279 ntBASIC4.76□□□□□ -1.65
RNF4P78317 AC093162.1-201ENST00000419682 124 ntBASIC4.76□□□□□ -1.65
RNF4P78317 LINC01344-201ENST00000420760 261 ntTSL 3 BASIC4.76□□□□□ -1.65
RNF4P78317 DDX39BP1-205ENST00000422507 192 ntBASIC4.76□□□□□ -1.65
RNF4P78317 RPL7P37-201ENST00000425095 738 ntBASIC4.76□□□□□ -1.65
RNF4P78317 CYP1B1-AS1-202ENST00000427168 484 ntTSL 4 BASIC4.76□□□□□ -1.65
RNF4P78317 AL445488.1-202ENST00000430623 545 ntTSL 3 BASIC4.76□□□□□ -1.65
RNF4P78317 AC009238.2-201ENST00000431026 355 ntBASIC4.76□□□□□ -1.65
RNF4P78317 AP000943.1-201ENST00000438416 712 ntTSL 3 BASIC4.76□□□□□ -1.65
RNF4P78317 AC091153.2-202ENST00000441700 384 ntTSL 3 BASIC4.76□□□□□ -1.65
RNF4P78317 KNOP1P3-201ENST00000446933 426 ntBASIC4.76□□□□□ -1.65
RNF4P78317 TPT1P13-201ENST00000449760 499 ntBASIC4.76□□□□□ -1.65
RNF4P78317 RPL7AP6-201ENST00000477943 801 ntBASIC4.76□□□□□ -1.65
RNF4P78317 AC097473.1-201ENST00000508142 408 ntBASIC4.76□□□□□ -1.65
RNF4P78317 AC116337.1-201ENST00000509680 687 ntBASIC4.76□□□□□ -1.65
RNF4P78317 AC098976.1-201ENST00000513014 541 ntBASIC4.76□□□□□ -1.65
RNF4P78317 RNU6-1095P-201ENST00000516148 108 ntBASIC4.76□□□□□ -1.65
RNF4P78317 FGD4-210ENST00000525053 2925 ntTSL 2 BASIC4.76□□□□□ -1.65
RNF4P78317 GYPA-211ENST00000535709 695 ntAPPRIS ALT2 TSL 1 (best) BASIC4.76□□□□□ -1.65
RNF4P78317 AC069437.1-201ENST00000551372 512 ntTSL 4 BASIC4.76□□□□□ -1.65
RNF4P78317 AL117187.1-201ENST00000555482 181 ntBASIC4.76□□□□□ -1.65
RNF4P78317 MIR4503-201ENST00000582187 83 ntBASIC4.76□□□□□ -1.65
RNF4P78317 AC067852.3-201ENST00000589177 561 ntBASIC4.76□□□□□ -1.65
RNF4P78317 BNIP3P16-201ENST00000589779 534 ntBASIC4.76□□□□□ -1.65
RNF4P78317 AC006006.1-201ENST00000603082 144 ntBASIC4.76□□□□□ -1.65
RNF4P78317 AL354984.3-201ENST00000604803 325 ntBASIC4.76□□□□□ -1.65
RNF4P78317 AL356056.1-205ENST00000608904 651 ntTSL 5 BASIC4.76□□□□□ -1.65
RNF4P78317 C17orf78-204ENST00000615133 1862 ntAPPRIS P3 TSL 1 (best) BASIC4.76□□□□□ -1.65
RNF4P78317 PISRT1.1-201ENST00000616930 107 ntBASIC4.76□□□□□ -1.65
RNF4P78317 AC087588.2-201ENST00000617667 426 ntBASIC4.76□□□□□ -1.65
RNF4P78317 LINC01232-203ENST00000625369 576 ntTSL 4 BASIC4.76□□□□□ -1.65
RNF4P78317 LDHA-225ENST00000625635 141 ntTSL 5 BASIC4.76□□□□□ -1.65
RNF4P78317 AL732372.2-225ENST00000642124 456 ntBASIC4.76□□□□□ -1.65
RNF4P78317 ZNF678-201ENST00000343776 8556 ntAPPRIS P1 TSL 1 (best) BASIC4.76□□□□□ -1.65
RNF4P78317 AC118758.3-201ENST00000624628 24137 ntTSL 5 BASIC4.76□□□□□ -1.65
RNF4P78317 ZFP14-201ENST00000270001 7489 ntAPPRIS P1 TSL 1 (best) BASIC4.76□□□□□ -1.65
RNF4P78317 BX088651.2-201ENST00000425493 3614 ntTSL 2 BASIC4.76□□□□□ -1.65
RNF4P78317 RPGRIP1L-212ENST00000621565 6038 ntAPPRIS ALT1 TSL 1 (best) BASIC4.76□□□□□ -1.65
RNF4P78317 OBSCN-210ENST00000570156 26925 ntAPPRIS P1 TSL 5 BASIC4.76□□□□□ -1.65
RNF4P78317 CDH17-201ENST00000027335 3693 ntAPPRIS P1 TSL 1 (best) BASIC4.76□□□□□ -1.65
RNF4P78317 AC090337.1-201ENST00000579651 2074 ntBASIC4.76□□□□□ -1.65
RNF4P78317 VPS50-202ENST00000305866 3613 ntAPPRIS P1 TSL 1 (best) BASIC4.76□□□□□ -1.65
RNF4P78317 Z94721.2-201ENST00000609590 5310 ntTSL 2 BASIC4.76□□□□□ -1.65
RNF4P78317 R3HCC1L-202ENST00000314594 3198 ntAPPRIS P1 TSL 5 BASIC4.75□□□□□ -1.65
RNF4P78317 OR51H2P-202ENST00000641424 3046 ntBASIC4.75□□□□□ -1.65
RNF4P78317 WDR5B-201ENST00000330689 3720 ntAPPRIS P1 BASIC4.75□□□□□ -1.65
RNF4P78317 NPIPB9-201ENST00000357796 2037 ntAPPRIS ALT2 TSL 1 (best) BASIC4.75□□□□□ -1.65
RNF4P78317 D21S2088E-201ENST00000262354 1725 ntTSL 1 (best) BASIC4.75□□□□□ -1.65
RNF4P78317 OR8A1-203ENST00000641670 5709 ntAPPRIS P1 BASIC4.75□□□□□ -1.65
RNF4P78317 VWC2L-202ENST00000427124 4480 ntTSL 1 (best) BASIC4.75□□□□□ -1.65
RNF4P78317 LINC01355-201ENST00000566551 5444 ntBASIC4.75□□□□□ -1.65
RNF4P78317 ZNF568-216ENST00000619231 3797 ntAPPRIS P1 TSL 3 BASIC4.75□□□□□ -1.65
RNF4P78317 OR9G1-202ENST00000642097 3611 ntAPPRIS P1 BASIC4.75□□□□□ -1.65
RNF4P78317 NDUFAF4-201ENST00000316149 2399 ntAPPRIS P1 TSL 1 (best) BASIC4.75□□□□□ -1.65
RNF4P78317 RNU6-1249P-201ENST00000363237 111 ntBASIC4.75□□□□□ -1.65
RNF4P78317 RN7SKP113-201ENST00000363891 295 ntBASIC4.75□□□□□ -1.65
RNF4P78317 RNU6-593P-201ENST00000364716 112 ntBASIC4.75□□□□□ -1.65
RNF4P78317 S100A12-201ENST00000368737 518 ntAPPRIS P1 TSL 1 (best) BASIC4.75□□□□□ -1.65
RNF4P78317 RNU6-434P-201ENST00000384376 107 ntBASIC4.75□□□□□ -1.65
RNF4P78317 SNORA70E-201ENST00000384492 135 ntBASIC4.75□□□□□ -1.65
RNF4P78317 AL645927.1-201ENST00000396783 406 ntBASIC4.75□□□□□ -1.65
RNF4P78317 C2orf73-203ENST00000405749 576 ntTSL 4 BASIC4.75□□□□□ -1.65
RNF4P78317 RNU6ATAC7P-201ENST00000408111 127 ntBASIC4.75□□□□□ -1.65
RNF4P78317 RNU6-712P-201ENST00000410558 100 ntBASIC4.75□□□□□ -1.65
RNF4P78317 AMMECR1LP1-201ENST00000415152 841 ntBASIC4.75□□□□□ -1.65
RNF4P78317 RPL7P10-201ENST00000417407 739 ntBASIC4.75□□□□□ -1.65
RNF4P78317 DPH5-204ENST00000427040 609 ntTSL 1 (best) BASIC4.75□□□□□ -1.65
RNF4P78317 AC016712.1-201ENST00000431088 378 ntBASIC4.75□□□□□ -1.65
RNF4P78317 PLCE1-AS2-203ENST00000433038 396 ntTSL 2 BASIC4.75□□□□□ -1.65
RNF4P78317 CKS1BP5-201ENST00000434172 273 ntBASIC4.75□□□□□ -1.65
RNF4P78317 TTTY20-201ENST00000434487 259 ntTSL 1 (best) BASIC4.75□□□□□ -1.65
RNF4P78317 AC009487.1-201ENST00000444164 403 ntTSL 3 BASIC4.75□□□□□ -1.65
RNF4P78317 ARL2BPP10-201ENST00000446487 531 ntBASIC4.75□□□□□ -1.65
RNF4P78317 RPL21P23-201ENST00000446654 460 ntBASIC4.75□□□□□ -1.65
RNF4P78317 BTF3P15-201ENST00000455606 336 ntBASIC4.75□□□□□ -1.65
RNF4P78317 AL080313.2-201ENST00000456440 489 ntTSL 3 BASIC4.75□□□□□ -1.65
RNF4P78317 RNA5SP103-201ENST00000459503 118 ntBASIC4.75□□□□□ -1.65
RNF4P78317 RN7SL443P-201ENST00000464331 290 ntBASIC4.75□□□□□ -1.65
RNF4P78317 MORC1-AS1-201ENST00000480826 564 ntTSL 2 BASIC4.75□□□□□ -1.65
RNF4P78317 RN7SL808P-201ENST00000496066 299 ntBASIC4.75□□□□□ -1.65
RNF4P78317 AC004980.4-201ENST00000513375 203 ntBASIC4.75□□□□□ -1.65
RNF4P78317 AP002444.1-201ENST00000534252 620 ntTSL 3 BASIC4.75□□□□□ -1.65
RNF4P78317 APAF1-207ENST00000547743 651 ntTSL 3 BASIC4.75□□□□□ -1.65
RNF4P78317 AL031600.2-201ENST00000563223 307 ntTSL 5 BASIC4.75□□□□□ -1.65
RNF4P78317 LINC01859-201ENST00000565584 1024 ntTSL 1 (best) BASIC4.75□□□□□ -1.65
RNF4P78317 GMFG-202ENST00000594700 397 ntTSL 2 BASIC4.75□□□□□ -1.65
RNF4P78317 AC073539.2-201ENST00000597113 165 ntBASIC4.75□□□□□ -1.65
RNF4P78317 AC011890.2-201ENST00000613393 294 ntBASIC4.75□□□□□ -1.65
RNF4P78317 RBBP6-203ENST00000381039 3384 ntTSL 1 (best) BASIC4.75□□□□□ -1.65
RNF4P78317 C5orf42-201ENST00000425232 11199 ntAPPRIS P2 TSL 5 BASIC4.75□□□□□ -1.65
RNF4P78317 AC011900.1-201ENST00000446838 2999 ntTSL 1 (best) BASIC4.75□□□□□ -1.65
Retrieved 100 of 98,524 protein–RNA pairs in 96.3 ms