Protein–RNA interactions for Protein: P41225

SOX3, Transcription factor SOX-3, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX3P41225 AL024509.2-201ENST00000493462 493 ntBASIC3.2□□□□□ -1.9
SOX3P41225 RPL7P47-201ENST00000497299 556 ntBASIC3.2□□□□□ -1.9
SOX3P41225 LINC02496-201ENST00000509559 584 ntTSL 3 BASIC3.2□□□□□ -1.9
SOX3P41225 RNU6-714P-201ENST00000516963 103 ntBASIC3.2□□□□□ -1.9
SOX3P41225 AC090739.1-201ENST00000522190 708 ntTSL 3 BASIC3.2□□□□□ -1.9
SOX3P41225 AC013828.2-201ENST00000532487 235 ntBASIC3.2□□□□□ -1.9
SOX3P41225 AC069228.1-202ENST00000550272 737 ntTSL 3 BASIC3.2□□□□□ -1.9
SOX3P41225 AC093012.1-201ENST00000552999 446 ntTSL 3 BASIC3.2□□□□□ -1.9
SOX3P41225 AL352979.2-201ENST00000556988 366 ntTSL 3 BASIC3.2□□□□□ -1.9
SOX3P41225 AC012379.1-201ENST00000558304 406 ntTSL 3 BASIC3.2□□□□□ -1.9
SOX3P41225 AC091489.2-201ENST00000566263 604 ntBASIC3.2□□□□□ -1.9
SOX3P41225 AP005136.1-201ENST00000579765 429 ntBASIC3.2□□□□□ -1.9
SOX3P41225 AC010928.3-201ENST00000587712 541 ntBASIC3.2□□□□□ -1.9
SOX3P41225 AC097467.3-204ENST00000595229 827 ntTSL 5 BASIC3.2□□□□□ -1.9
SOX3P41225 TEX41-222ENST00000597173 1134 ntTSL 1 (best) BASIC3.2□□□□□ -1.9
SOX3P41225 AC080013.6-201ENST00000606185 215 ntBASIC3.2□□□□□ -1.9
SOX3P41225 AC011816.2-201ENST00000607089 556 ntBASIC3.2□□□□□ -1.9
SOX3P41225 RBM39-201ENST00000253363 2488 ntAPPRIS P4 TSL 1 (best) BASIC3.2□□□□□ -1.9
SOX3P41225 AC006378.2-201ENST00000623178 2476 ntBASIC3.2□□□□□ -1.9
SOX3P41225 SLC5A3-201ENST00000381151 11576 ntAPPRIS P1 TSL 1 (best) BASIC3.2□□□□□ -1.9
SOX3P41225 SYNE2-212ENST00000554584 20508 ntTSL 5 BASIC3.2□□□□□ -1.9
SOX3P41225 THUMPD3P1-201ENST00000506556 1480 ntBASIC3.2□□□□□ -1.9
SOX3P41225 MBNL1-206ENST00000357472 5256 ntTSL 5 BASIC3.2□□□□□ -1.9
SOX3P41225 MBNL1-223ENST00000498502 5258 ntTSL 5 BASIC3.2□□□□□ -1.9
SOX3P41225 AL645937.1-201ENST00000641739 1652 ntBASIC3.2□□□□□ -1.9
SOX3P41225 DCUN1D1-201ENST00000292782 7954 ntAPPRIS P1 TSL 1 (best) BASIC3.2□□□□□ -1.9
SOX3P41225 NEB-204ENST00000409198 20637 ntAPPRIS P3 TSL 5 BASIC3.19□□□□□ -1.9
SOX3P41225 AL513185.3-201ENST00000433335 1300 ntBASIC3.19□□□□□ -1.9
SOX3P41225 AC020637.1-201ENST00000546977 1447 ntTSL 5 BASIC3.19□□□□□ -1.9
SOX3P41225 RGS13-201ENST00000391995 1505 ntAPPRIS P1 TSL 1 (best) BASIC3.19□□□□□ -1.9
SOX3P41225 AC005550.3-201ENST00000451240 3743 ntTSL 1 (best) BASIC3.19□□□□□ -1.9
SOX3P41225 AL049781.1-201ENST00000623195 3585 ntBASIC3.19□□□□□ -1.9
SOX3P41225 RASSF8-210ENST00000541490 5505 ntAPPRIS P1 TSL 5 BASIC3.19□□□□□ -1.9
SOX3P41225 PMCH-201ENST00000329406 766 ntAPPRIS P1 TSL 1 (best) BASIC3.19□□□□□ -1.9
SOX3P41225 QKI-202ENST00000361195 1063 ntTSL 1 (best) BASIC3.19□□□□□ -1.9
SOX3P41225 RNU4-21P-201ENST00000362802 126 ntBASIC3.19□□□□□ -1.9
SOX3P41225 SNORD6-201ENST00000365444 73 ntBASIC3.19□□□□□ -1.9
SOX3P41225 SNORA70.4-201ENST00000365509 134 ntBASIC3.19□□□□□ -1.9
SOX3P41225 RNU6-629P-201ENST00000384061 103 ntBASIC3.19□□□□□ -1.9
SOX3P41225 SNORA26.8-201ENST00000391306 124 ntBASIC3.19□□□□□ -1.9
SOX3P41225 RPS3AP26-201ENST00000398259 784 ntBASIC3.19□□□□□ -1.9
SOX3P41225 AL356421.1-201ENST00000403255 413 ntBASIC3.19□□□□□ -1.9
SOX3P41225 RNU6-712P-201ENST00000410558 100 ntBASIC3.19□□□□□ -1.9
SOX3P41225 RNU2-47P-201ENST00000410649 186 ntBASIC3.19□□□□□ -1.9
SOX3P41225 RNA5SP31-201ENST00000411144 127 ntBASIC3.19□□□□□ -1.9
SOX3P41225 MAGI2-AS2-201ENST00000411616 476 ntTSL 2 BASIC3.19□□□□□ -1.9
SOX3P41225 AL391704.1-203ENST00000414903 462 ntTSL 3 BASIC3.19□□□□□ -1.9
SOX3P41225 AL158834.2-201ENST00000415731 696 ntTSL 2 BASIC3.19□□□□□ -1.9
SOX3P41225 LINC00392-201ENST00000430033 557 ntTSL 3 BASIC3.19□□□□□ -1.9
SOX3P41225 AC244035.1-201ENST00000430042 390 ntBASIC3.19□□□□□ -1.9
SOX3P41225 AC097713.2-201ENST00000430199 356 ntBASIC3.19□□□□□ -1.9
SOX3P41225 AC129850.1-201ENST00000436203 508 ntBASIC3.19□□□□□ -1.9
SOX3P41225 Z83839.2-201ENST00000436294 274 ntTSL 5 BASIC3.19□□□□□ -1.9
SOX3P41225 TRIM60P18-201ENST00000441518 828 ntBASIC3.19□□□□□ -1.9
SOX3P41225 AL121957.1-201ENST00000441532 338 ntTSL 2 BASIC3.19□□□□□ -1.9
SOX3P41225 AL035701.1-201ENST00000444038 462 ntTSL 3 BASIC3.19□□□□□ -1.9
SOX3P41225 BMI1P1-201ENST00000445879 941 ntBASIC3.19□□□□□ -1.9
SOX3P41225 EPS15P1-201ENST00000448836 336 ntBASIC3.19□□□□□ -1.9
SOX3P41225 AC009961.3-201ENST00000449832 765 ntBASIC3.19□□□□□ -1.9
SOX3P41225 AC008155.2-201ENST00000464337 397 ntBASIC3.19□□□□□ -1.9
SOX3P41225 AP001025.2-201ENST00000490908 477 ntBASIC3.19□□□□□ -1.9
SOX3P41225 AC074250.1-201ENST00000511117 192 ntBASIC3.19□□□□□ -1.9
SOX3P41225 RNU4ATAC3P-201ENST00000516699 126 ntBASIC3.19□□□□□ -1.9
SOX3P41225 MIR2276-201ENST00000516886 89 ntBASIC3.19□□□□□ -1.9
SOX3P41225 SNHG6-202ENST00000520619 479 ntTSL 3 BASIC3.19□□□□□ -1.9
SOX3P41225 HIGD1AP10-201ENST00000527837 282 ntBASIC3.19□□□□□ -1.9
SOX3P41225 AC090092.1-201ENST00000530576 510 ntTSL 2 BASIC3.19□□□□□ -1.9
SOX3P41225 GLYCAM1-202ENST00000546607 553 ntTSL 1 (best) BASIC3.19□□□□□ -1.9
SOX3P41225 AL121603.1-201ENST00000553815 142 ntBASIC3.19□□□□□ -1.9
SOX3P41225 AC093515.1-201ENST00000567103 445 ntTSL 5 BASIC3.19□□□□□ -1.9
SOX3P41225 MIR4307-201ENST00000582802 84 ntBASIC3.19□□□□□ -1.9
SOX3P41225 SNRPGP15-201ENST00000600149 222 ntBASIC3.19□□□□□ -1.9
SOX3P41225 AC012669.1-201ENST00000603209 283 ntBASIC3.19□□□□□ -1.9
SOX3P41225 AL022161.1-201ENST00000604390 213 ntBASIC3.19□□□□□ -1.9
SOX3P41225 AC128687.1-201ENST00000605304 619 ntBASIC3.19□□□□□ -1.9
SOX3P41225 AC027045.1-201ENST00000609065 202 ntTSL 5 BASIC3.19□□□□□ -1.9
SOX3P41225 AC009090.3-201ENST00000616553 565 ntBASIC3.19□□□□□ -1.9
SOX3P41225 C3orf85-208ENST00000622536 925 ntAPPRIS P5 TSL 5 BASIC3.19□□□□□ -1.9
SOX3P41225 AL356585.4-201ENST00000623078 1229 ntBASIC3.19□□□□□ -1.9
SOX3P41225 SOX2-OT-255ENST00000630150 649 ntTSL 5 BASIC3.19□□□□□ -1.9
SOX3P41225 AP003399.1-201ENST00000637534 361 ntBASIC3.19□□□□□ -1.9
SOX3P41225 CRYM-AS1-204ENST00000637983 556 ntBASIC3.19□□□□□ -1.9
SOX3P41225 GYPA-202ENST00000360771 2659 ntAPPRIS P3 TSL 1 (best) BASIC3.19□□□□□ -1.9
SOX3P41225 PHTF2-201ENST00000248550 4778 ntTSL 1 (best) BASIC3.19□□□□□ -1.9
SOX3P41225 CLHC1-201ENST00000401408 2248 ntAPPRIS P1 TSL 1 (best) BASIC3.19□□□□□ -1.9
SOX3P41225 C2orf73-202ENST00000398634 1921 ntAPPRIS P1 TSL 1 (best) BASIC3.19□□□□□ -1.9
SOX3P41225 TOP2A-201ENST00000423485 5758 ntAPPRIS P1 TSL 1 (best) BASIC3.19□□□□□ -1.9
SOX3P41225 PTPN22-207ENST00000528414 3424 ntTSL 1 (best) BASIC3.18□□□□□ -1.9
SOX3P41225 NUDT12-201ENST00000230792 3492 ntAPPRIS P1 TSL 1 (best) BASIC3.18□□□□□ -1.9
SOX3P41225 NUFIP2-201ENST00000225388 10850 ntAPPRIS P1 TSL 1 (best) BASIC3.18□□□□□ -1.9
SOX3P41225 TNP2-201ENST00000312693 626 ntAPPRIS P1 TSL 1 (best) BASIC3.18□□□□□ -1.9
SOX3P41225 Y_RNA.97-201ENST00000363094 102 ntBASIC3.18□□□□□ -1.9
SOX3P41225 RNU1-33P-201ENST00000364249 162 ntBASIC3.18□□□□□ -1.9
SOX3P41225 RNU6-335P-201ENST00000364563 113 ntBASIC3.18□□□□□ -1.9
SOX3P41225 RNU6-1207P-201ENST00000384343 107 ntBASIC3.18□□□□□ -1.9
SOX3P41225 MIR34B-201ENST00000385076 84 ntBASIC3.18□□□□□ -1.9
SOX3P41225 ZNF705D-201ENST00000400078 925 ntAPPRIS P1 TSL 2 BASIC3.18□□□□□ -1.9
SOX3P41225 AL023581.1-201ENST00000423500 455 ntTSL 2 BASIC3.18□□□□□ -1.9
SOX3P41225 LINC00189-202ENST00000431661 308 ntTSL 5 BASIC3.18□□□□□ -1.9
SOX3P41225 AL583835.2-201ENST00000435483 500 ntTSL 2 BASIC3.18□□□□□ -1.9
Retrieved 100 of 98,524 protein–RNA pairs in 98.7 ms