Protein–RNA interactions for Protein: P04114

APOB, Apolipoprotein B-100, humanhuman

Known RBP Predictions only

Length 4,563 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
APOBP04114 RNU6-826P-201ENST00000516827 104 ntBASIC1.02□□□□□ -2.25
APOBP04114 OR4G1P-203ENST00000641984 1631 ntBASIC1.02□□□□□ -2.25
APOBP04114 CKAP2P1-201ENST00000555477 2049 ntBASIC1.02□□□□□ -2.25
APOBP04114 RNU1-22P-201ENST00000363334 158 ntBASIC1.02□□□□□ -2.25
APOBP04114 RNA5SP181-201ENST00000410246 98 ntBASIC1.02□□□□□ -2.25
APOBP04114 MTCO3P30-201ENST00000426425 670 ntBASIC1.02□□□□□ -2.25
APOBP04114 DIAPH2-AS1-202ENST00000445414 606 ntTSL 2 BASIC1.02□□□□□ -2.25
APOBP04114 RPS27AP18-201ENST00000515536 459 ntBASIC1.02□□□□□ -2.25
APOBP04114 AC136443.5-201ENST00000603741 370 ntBASIC1.02□□□□□ -2.25
APOBP04114 SERPINI2-202ENST00000461846 1514 ntAPPRIS P1 TSL 1 (best) BASIC1.02□□□□□ -2.25
APOBP04114 NCSTNP1-201ENST00000406229 144 ntBASIC1.01□□□□□ -2.25
APOBP04114 AL353780.1-201ENST00000455583 458 ntTSL 2 BASIC1.01□□□□□ -2.25
APOBP04114 SNRPFP4-201ENST00000456366 242 ntBASIC1.01□□□□□ -2.25
APOBP04114 DENND6A-AS1-201ENST00000470427 364 ntTSL 2 BASIC1.01□□□□□ -2.25
APOBP04114 RPL7P5-201ENST00000471472 736 ntBASIC1.01□□□□□ -2.25
APOBP04114 AC092989.1-201ENST00000481235 277 ntBASIC1.01□□□□□ -2.25
APOBP04114 AC109464.2-201ENST00000510242 943 ntBASIC1.01□□□□□ -2.25
APOBP04114 AC021242.2-203ENST00000521842 687 ntTSL 3 BASIC1.01□□□□□ -2.25
APOBP04114 AB015752.1-201ENST00000521975 578 ntTSL 5 BASIC1.01□□□□□ -2.25
APOBP04114 AC109466.1-214ENST00000522762 583 ntTSL 2 BASIC1.01□□□□□ -2.25
APOBP04114 AC087241.2-201ENST00000535801 324 ntBASIC1.01□□□□□ -2.25
APOBP04114 AL049838.1-201ENST00000563647 981 ntBASIC1.01□□□□□ -2.25
APOBP04114 AC023813.2-201ENST00000564321 469 ntBASIC1.01□□□□□ -2.25
APOBP04114 MYL12BP1-201ENST00000569826 507 ntBASIC1.01□□□□□ -2.25
APOBP04114 MIR151B-201ENST00000584249 96 ntBASIC1.01□□□□□ -2.25
APOBP04114 PIK3C2G-201ENST00000266497 4764 ntAPPRIS P1 TSL 1 (best) BASIC1.01□□□□□ -2.25
APOBP04114 SEMG2-201ENST00000372769 2051 ntAPPRIS P1 TSL 1 (best) BASIC1.01□□□□□ -2.25
APOBP04114 AGTR1-204ENST00000418473 2071 ntTSL 5 BASIC1.01□□□□□ -2.25
APOBP04114 N4BP2L2-205ENST00000446957 2071 ntTSL 5 BASIC1.01□□□□□ -2.25
APOBP04114 SKIL-204ENST00000458537 7182 ntAPPRIS P1 TSL 1 (best) BASIC1.01□□□□□ -2.25
APOBP04114 USP45-208ENST00000500704 5826 ntAPPRIS P1 TSL 5 BASIC1.01□□□□□ -2.25
APOBP04114 MIR548J-201ENST00000408833 112 ntBASIC1.01□□□□□ -2.25
APOBP04114 RPL34P26-201ENST00000445636 354 ntBASIC1.01□□□□□ -2.25
APOBP04114 LINC00944-203ENST00000542248 548 ntTSL 4 BASIC1.01□□□□□ -2.25
APOBP04114 AL157834.3-201ENST00000615543 103 ntBASIC1.01□□□□□ -2.25
APOBP04114 ZNF117-204ENST00000620222 5317 ntAPPRIS P1 TSL 1 (best) BASIC1.01□□□□□ -2.25
APOBP04114 MDM2-206ENST00000350057 1401 ntTSL 1 (best) BASIC1.01□□□□□ -2.25
APOBP04114 APC-201ENST00000257430 10701 ntAPPRIS P1 TSL 5 BASIC1.01□□□□□ -2.25
APOBP04114 SNORD114-27-201ENST00000363766 70 ntBASIC1.01□□□□□ -2.25
APOBP04114 RNU4-13P-201ENST00000364019 141 ntBASIC1.01□□□□□ -2.25
APOBP04114 RNU6-461P-201ENST00000364195 107 ntBASIC1.01□□□□□ -2.25
APOBP04114 RNU6ATAC20P-201ENST00000408436 127 ntBASIC1.01□□□□□ -2.25
APOBP04114 NEK4P1-201ENST00000433383 879 ntBASIC1.01□□□□□ -2.25
APOBP04114 AC104350.1-201ENST00000518750 877 ntTSL 3 BASIC1.01□□□□□ -2.25
APOBP04114 TIMM9-203ENST00000555061 598 ntAPPRIS P1 TSL 1 (best) BASIC1.01□□□□□ -2.25
APOBP04114 AC025682.1-201ENST00000582389 437 ntTSL 5 BASIC1.01□□□□□ -2.25
APOBP04114 AC005730.3-201ENST00000583067 366 ntBASIC1.01□□□□□ -2.25
APOBP04114 MUCL1-205ENST00000619042 243 ntAPPRIS ALT2 TSL 5 BASIC1.01□□□□□ -2.25
APOBP04114 hsa-mir-3158-1.1-201ENST00000637571 81 ntBASIC1.01□□□□□ -2.25
APOBP04114 AL355578.1-201ENST00000607405 1328 ntBASIC1.01□□□□□ -2.25
APOBP04114 RPL23AP39-201ENST00000415533 405 ntBASIC1.01□□□□□ -2.25
APOBP04114 HMGB1P47-201ENST00000511281 589 ntBASIC1.01□□□□□ -2.25
APOBP04114 AP005660.1-201ENST00000522972 293 ntBASIC1.01□□□□□ -2.25
APOBP04114 NIFKP8-201ENST00000560500 874 ntBASIC1.01□□□□□ -2.25
APOBP04114 AL596028.1-201ENST00000326971 197 ntBASIC1□□□□□ -2.25
APOBP04114 RNU1-93P-201ENST00000364704 169 ntBASIC1□□□□□ -2.25
APOBP04114 SRIP3-201ENST00000413200 219 ntBASIC1□□□□□ -2.25
APOBP04114 AP001117.1-201ENST00000428205 609 ntTSL 2 BASIC1□□□□□ -2.25
APOBP04114 MTND4LP16-201ENST00000440828 295 ntBASIC1□□□□□ -2.25
APOBP04114 CHRM3-AS2-203ENST00000458325 895 ntTSL 2 BASIC1□□□□□ -2.25
APOBP04114 LNX1-AS2-201ENST00000502410 347 ntTSL 5 BASIC1□□□□□ -2.25
APOBP04114 MTND5P21-201ENST00000531961 522 ntBASIC1□□□□□ -2.25
APOBP04114 SDHAF2-205ENST00000537782 559 ntTSL 4 BASIC1□□□□□ -2.25
APOBP04114 AC087286.1-201ENST00000560712 568 ntTSL 3 BASIC1□□□□□ -2.25
APOBP04114 AC006023.2-201ENST00000609916 167 ntBASIC1□□□□□ -2.25
APOBP04114 SLC25A46-204ENST00000504098 2345 ntTSL 5 BASIC1□□□□□ -2.25
APOBP04114 OR1A2-201ENST00000381951 930 ntAPPRIS P1 BASIC1□□□□□ -2.25
APOBP04114 RNU6-1105P-201ENST00000384774 107 ntBASIC1□□□□□ -2.25
APOBP04114 RNU1-139P-201ENST00000391307 165 ntBASIC1□□□□□ -2.25
APOBP04114 LINC01549-201ENST00000440664 714 ntTSL 3 BASIC1□□□□□ -2.25
APOBP04114 MTND3P6-201ENST00000485242 339 ntBASIC1□□□□□ -2.25
APOBP04114 AC004053.1-201ENST00000515127 575 ntTSL 5 BASIC1□□□□□ -2.25
APOBP04114 AC022790.1-201ENST00000522872 204 ntBASIC1□□□□□ -2.25
APOBP04114 AC084851.1-201ENST00000529105 249 ntBASIC1□□□□□ -2.25
APOBP04114 AC002546.1-201ENST00000588041 2504 ntBASIC1□□□□□ -2.25
APOBP04114 NETO1-202ENST00000397929 1849 ntTSL 1 (best) BASIC1□□□□□ -2.25
APOBP04114 IVNS1ABP-201ENST00000367497 746 ntTSL 5 BASIC1□□□□□ -2.25
APOBP04114 DEFB130A-201ENST00000400079 240 ntAPPRIS P1 TSL 1 (best) BASIC1□□□□□ -2.25
APOBP04114 DEFB130B-201ENST00000437818 240 ntAPPRIS P1 TSL 1 (best) BASIC1□□□□□ -2.25
APOBP04114 AL353148.1-201ENST00000449761 463 ntTSL 2 BASIC1□□□□□ -2.25
APOBP04114 AL390961.3-201ENST00000458171 485 ntTSL 5 BASIC1□□□□□ -2.25
APOBP04114 RPS26P21-201ENST00000475397 348 ntBASIC1□□□□□ -2.25
APOBP04114 IGHVII-53-1-201ENST00000519538 255 ntBASIC1□□□□□ -2.25
APOBP04114 LINC02490-201ENST00000559915 601 ntTSL 3 BASIC1□□□□□ -2.25
APOBP04114 AC098848.2-201ENST00000588023 330 ntBASIC1□□□□□ -2.25
APOBP04114 AC012493.3-201ENST00000604494 112 ntBASIC1□□□□□ -2.25
APOBP04114 LINC00397-202ENST00000606785 409 ntTSL 5 BASIC1□□□□□ -2.25
APOBP04114 AF230666.1-202ENST00000608375 870 ntTSL 5 BASIC1□□□□□ -2.25
APOBP04114 MIR6734-201ENST00000621166 68 ntBASIC1□□□□□ -2.25
APOBP04114 AC068544.1-201ENST00000635064 248 ntTSL 5 BASIC1□□□□□ -2.25
APOBP04114 OR4A15-202ENST00000641526 945 ntAPPRIS P1 BASIC1□□□□□ -2.25
APOBP04114 Y_RNA.36-201ENST00000362602 112 ntBASIC0.99□□□□□ -2.25
APOBP04114 Z98749.2-208ENST00000381646 500 ntBASIC0.99□□□□□ -2.25
APOBP04114 SNORA40.6-201ENST00000391153 128 ntBASIC0.99□□□□□ -2.25
APOBP04114 AL590783.1-201ENST00000424138 456 ntTSL 2 BASIC0.99□□□□□ -2.25
APOBP04114 AL138785.1-201ENST00000425821 331 ntBASIC0.99□□□□□ -2.25
APOBP04114 WARS2P1-201ENST00000429678 537 ntBASIC0.99□□□□□ -2.25
APOBP04114 LEKR1-205ENST00000477399 621 ntTSL 2 BASIC0.99□□□□□ -2.25
APOBP04114 PPP2R5A-205ENST00000537030 1719 ntTSL 2 BASIC0.99□□□□□ -2.25
APOBP04114 AL121852.1-201ENST00000554665 430 ntTSL 3 BASIC0.99□□□□□ -2.25
Retrieved 100 of 98,524 protein–RNA pairs in 100.7 ms