Protein–RNA interactions for Protein: A8TX70

COL6A5, Collagen alpha-5(VI) chain, humanhuman

Predictions only

Length 2,615 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A5A8TX70 MIR98-201ENST00000606724 119 ntBASIC1.4□□□□□ -2.19
COL6A5A8TX70 AC087588.2-201ENST00000617667 426 ntBASIC1.4□□□□□ -2.19
COL6A5A8TX70 SNORA50A-202ENST00000629536 136 ntBASIC1.4□□□□□ -2.19
COL6A5A8TX70 RBMS3-AS3-202ENST00000635847 738 ntTSL 5 BASIC1.4□□□□□ -2.19
COL6A5A8TX70 AC092447.7-201ENST00000422212 1621 ntBASIC1.4□□□□□ -2.19
COL6A5A8TX70 CYSLTR1-203ENST00000614798 2681 ntAPPRIS P1 TSL 1 (best) BASIC1.4□□□□□ -2.19
COL6A5A8TX70 OR5V1-217ENST00000641768 2763 ntAPPRIS P1 BASIC1.39□□□□□ -2.19
COL6A5A8TX70 U3.40-201ENST00000408706 208 ntBASIC1.39□□□□□ -2.19
COL6A5A8TX70 AC093157.1-203ENST00000416329 713 ntTSL 5 BASIC1.39□□□□□ -2.19
COL6A5A8TX70 MTCYBP7-201ENST00000419540 1134 ntBASIC1.39□□□□□ -2.19
COL6A5A8TX70 LINC01040-201ENST00000425048 666 ntTSL 2 BASIC1.39□□□□□ -2.19
COL6A5A8TX70 RPL39L-202ENST00000433055 749 ntAPPRIS P1 TSL 2 BASIC1.39□□□□□ -2.19
COL6A5A8TX70 CBWD4P-201ENST00000445695 655 ntBASIC1.39□□□□□ -2.19
COL6A5A8TX70 EGLN3-AS1-201ENST00000555922 308 ntTSL 3 BASIC1.39□□□□□ -2.19
COL6A5A8TX70 AC103987.3-201ENST00000582071 292 ntBASIC1.39□□□□□ -2.19
COL6A5A8TX70 LINC01928-201ENST00000591029 504 ntTSL 3 BASIC1.39□□□□□ -2.19
COL6A5A8TX70 AC107294.3-201ENST00000609211 526 ntBASIC1.39□□□□□ -2.19
COL6A5A8TX70 AL359094.1-202ENST00000629917 1113 ntTSL 5 BASIC1.39□□□□□ -2.19
COL6A5A8TX70 AL137003.2-201ENST00000606924 2538 ntBASIC1.39□□□□□ -2.19
COL6A5A8TX70 PCDH11Y-203ENST00000362095 4220 ntAPPRIS ALT2 TSL 1 (best) BASIC1.39□□□□□ -2.19
COL6A5A8TX70 NUP58P1-201ENST00000502546 1738 ntBASIC1.39□□□□□ -2.19
COL6A5A8TX70 RNU1-42P-201ENST00000364033 160 ntBASIC1.39□□□□□ -2.19
COL6A5A8TX70 HMGB1P11-201ENST00000413899 637 ntBASIC1.39□□□□□ -2.19
COL6A5A8TX70 AL096701.2-201ENST00000416920 238 ntBASIC1.39□□□□□ -2.19
COL6A5A8TX70 RPL36AP6-201ENST00000435770 321 ntBASIC1.39□□□□□ -2.19
COL6A5A8TX70 AL357514.1-201ENST00000446322 488 ntTSL 3 BASIC1.39□□□□□ -2.19
COL6A5A8TX70 CFTRP1-201ENST00000456646 183 ntBASIC1.39□□□□□ -2.19
COL6A5A8TX70 AC078883.3-201ENST00000458314 512 ntTSL 2 BASIC1.39□□□□□ -2.19
COL6A5A8TX70 AC069439.2-201ENST00000496403 789 ntTSL 2 BASIC1.39□□□□□ -2.19
COL6A5A8TX70 PTP4A1P6-201ENST00000531034 478 ntBASIC1.39□□□□□ -2.19
COL6A5A8TX70 OR8X1P-201ENST00000534542 869 ntBASIC1.39□□□□□ -2.19
COL6A5A8TX70 CD69-203ENST00000536709 1020 ntTSL 2 BASIC1.39□□□□□ -2.19
COL6A5A8TX70 AC074052.2-201ENST00000562516 214 ntTSL 3 BASIC1.39□□□□□ -2.19
COL6A5A8TX70 AL645944.1-201ENST00000603857 493 ntBASIC1.39□□□□□ -2.19
COL6A5A8TX70 AL157834.3-201ENST00000615543 103 ntBASIC1.39□□□□□ -2.19
COL6A5A8TX70 AL353770.2-201ENST00000620024 78 ntBASIC1.39□□□□□ -2.19
COL6A5A8TX70 MIR338-201ENST00000636369 67 ntBASIC1.39□□□□□ -2.19
COL6A5A8TX70 AC010329.2-201ENST00000595195 2737 ntBASIC1.39□□□□□ -2.19
COL6A5A8TX70 MTND4P1-201ENST00000457501 1466 ntBASIC1.39□□□□□ -2.19
COL6A5A8TX70 GABRA2-209ENST00000510861 3411 ntAPPRIS P1 TSL 5 BASIC1.39□□□□□ -2.19
COL6A5A8TX70 Y_RNA.85-201ENST00000363014 111 ntBASIC1.38□□□□□ -2.19
COL6A5A8TX70 RNU4-51P-201ENST00000364206 140 ntBASIC1.38□□□□□ -2.19
COL6A5A8TX70 LINC01427-201ENST00000420928 504 ntTSL 3 BASIC1.38□□□□□ -2.19
COL6A5A8TX70 AC006076.1-201ENST00000423233 345 ntTSL 3 BASIC1.38□□□□□ -2.19
COL6A5A8TX70 AC007179.2-204ENST00000444001 765 ntTSL 3 BASIC1.38□□□□□ -2.19
COL6A5A8TX70 FAM104B-204ENST00000472571 1109 ntAPPRIS ALT2 TSL 1 (best) BASIC1.38□□□□□ -2.19
COL6A5A8TX70 BOLA3P3-201ENST00000505182 232 ntBASIC1.38□□□□□ -2.19
COL6A5A8TX70 FABP5P5-201ENST00000515537 406 ntBASIC1.38□□□□□ -2.19
COL6A5A8TX70 RNA5SP76-201ENST00000516277 87 ntBASIC1.38□□□□□ -2.19
COL6A5A8TX70 AC012186.2-201ENST00000569353 321 ntTSL 3 BASIC1.38□□□□□ -2.19
COL6A5A8TX70 MIR4506-201ENST00000584693 77 ntBASIC1.38□□□□□ -2.19
COL6A5A8TX70 AP001029.2-202ENST00000588197 739 ntTSL 3 BASIC1.38□□□□□ -2.19
COL6A5A8TX70 AC016727.2-201ENST00000603988 621 ntBASIC1.38□□□□□ -2.19
COL6A5A8TX70 AL627309.6-201ENST00000606857 840 ntBASIC1.38□□□□□ -2.19
COL6A5A8TX70 DARS-AS1-221ENST00000608471 532 ntTSL 5 BASIC1.38□□□□□ -2.19
COL6A5A8TX70 AC126177.8-201ENST00000618339 1015 ntBASIC1.38□□□□□ -2.19
COL6A5A8TX70 GPR34-203ENST00000620846 1282 ntTSL 1 (best) BASIC1.38□□□□□ -2.19
COL6A5A8TX70 AL591030.1-201ENST00000626131 627 ntTSL 3 BASIC1.38□□□□□ -2.19
COL6A5A8TX70 AP001117.1-201ENST00000428205 609 ntTSL 2 BASIC1.38□□□□□ -2.19
COL6A5A8TX70 AL354977.1-201ENST00000438147 679 ntTSL 5 BASIC1.38□□□□□ -2.19
COL6A5A8TX70 SDR42E1P3-201ENST00000438345 502 ntBASIC1.38□□□□□ -2.19
COL6A5A8TX70 MYCBP2-AS1-203ENST00000450627 349 ntTSL 3 BASIC1.38□□□□□ -2.19
COL6A5A8TX70 MIR4435-2HG-213ENST00000451884 423 ntTSL 3 BASIC1.38□□□□□ -2.19
COL6A5A8TX70 AMD1P1-201ENST00000457220 922 ntBASIC1.38□□□□□ -2.19
COL6A5A8TX70 AC012413.1-201ENST00000521294 519 ntTSL 2 BASIC1.38□□□□□ -2.19
COL6A5A8TX70 AC010511.1-202ENST00000590229 573 ntTSL 4 BASIC1.38□□□□□ -2.19
COL6A5A8TX70 PSMA6P4-201ENST00000603247 718 ntBASIC1.38□□□□□ -2.19
COL6A5A8TX70 AC013444.2-201ENST00000603317 787 ntBASIC1.38□□□□□ -2.19
COL6A5A8TX70 AC012640.5-201ENST00000623897 319 ntBASIC1.38□□□□□ -2.19
COL6A5A8TX70 AL592437.2-201ENST00000421655 2434 ntBASIC1.38□□□□□ -2.19
COL6A5A8TX70 AC025034.1-201ENST00000552778 1711 ntTSL 3 BASIC1.38□□□□□ -2.19
COL6A5A8TX70 TTK-202ENST00000369798 3010 ntAPPRIS P3 TSL 1 (best) BASIC1.38□□□□□ -2.19
COL6A5A8TX70 CDC27P3-201ENST00000635418 1910 ntBASIC1.38□□□□□ -2.19
COL6A5A8TX70 RNU1-138P-201ENST00000384093 164 ntBASIC1.37□□□□□ -2.19
COL6A5A8TX70 SNORA26.7-201ENST00000391288 122 ntBASIC1.37□□□□□ -2.19
COL6A5A8TX70 RNA5SP127-201ENST00000411051 133 ntBASIC1.37□□□□□ -2.19
COL6A5A8TX70 AL513331.1-201ENST00000411908 397 ntBASIC1.37□□□□□ -2.19
COL6A5A8TX70 XIST-201ENST00000416330 750 ntTSL 2 BASIC1.37□□□□□ -2.19
COL6A5A8TX70 CST2P1-201ENST00000425770 87 ntBASIC1.37□□□□□ -2.19
COL6A5A8TX70 NCOA7-AS1-201ENST00000429007 501 ntTSL 3 BASIC1.37□□□□□ -2.19
COL6A5A8TX70 AL590867.3-201ENST00000436953 438 ntTSL 3 BASIC1.37□□□□□ -2.19
COL6A5A8TX70 AP000852.1-201ENST00000472460 573 ntBASIC1.37□□□□□ -2.19
COL6A5A8TX70 AC010406.1-201ENST00000507948 555 ntTSL 3 BASIC1.37□□□□□ -2.19
COL6A5A8TX70 IGHVIII-5-1-201ENST00000523059 99 ntBASIC1.37□□□□□ -2.19
COL6A5A8TX70 C11orf65-206ENST00000529391 973 ntAPPRIS P1 TSL 2 BASIC1.37□□□□□ -2.19
COL6A5A8TX70 AC004542.1-201ENST00000602955 264 ntTSL 3 BASIC1.37□□□□□ -2.19
COL6A5A8TX70 AL645939.4-201ENST00000604495 135 ntBASIC1.37□□□□□ -2.19
COL6A5A8TX70 AC048347.1-201ENST00000624621 427 ntBASIC1.37□□□□□ -2.19
COL6A5A8TX70 SCN7A-201ENST00000409855 7183 ntAPPRIS P1 TSL 1 (best) BASIC1.37□□□□□ -2.19
COL6A5A8TX70 SCN7A-206ENST00000619410 7186 ntAPPRIS P1 TSL 5 BASIC1.37□□□□□ -2.19
COL6A5A8TX70 SCN7A-207ENST00000621965 7186 ntAPPRIS P1 TSL 5 BASIC1.37□□□□□ -2.19
COL6A5A8TX70 MTND4P23-201ENST00000447723 1363 ntBASIC1.37□□□□□ -2.19
COL6A5A8TX70 OR6C2-202ENST00000641202 2105 ntAPPRIS P1 BASIC1.37□□□□□ -2.19
COL6A5A8TX70 ZNF654-201ENST00000309495 4957 ntAPPRIS P2 TSL 1 (best) BASIC1.37□□□□□ -2.19
COL6A5A8TX70 ZNF679-201ENST00000255746 1297 ntAPPRIS P1 TSL 1 (best) BASIC1.37□□□□□ -2.19
COL6A5A8TX70 POLHP1-201ENST00000411806 470 ntBASIC1.37□□□□□ -2.19
COL6A5A8TX70 EBAG9P1-201ENST00000418955 543 ntBASIC1.37□□□□□ -2.19
COL6A5A8TX70 CALM1P2-201ENST00000452941 448 ntBASIC1.37□□□□□ -2.19
COL6A5A8TX70 AL121584.1-201ENST00000453972 519 ntTSL 3 BASIC1.37□□□□□ -2.19
COL6A5A8TX70 RNU2-58P-201ENST00000516403 183 ntBASIC1.37□□□□□ -2.19
Retrieved 100 of 98,524 protein–RNA pairs in 102.4 ms