Protein–RNA interactions for Protein: Q9NY93

DDX56, Probable ATP-dependent RNA helicase DDX56, humanhuman

Known RBP Predictions only

Length 547 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX56Q9NY93 AP003072.2-201ENST00000527756 676 ntBASIC4.48□□□□□ -1.69
DDX56Q9NY93 HIGD1AP5-201ENST00000529959 259 ntBASIC4.48□□□□□ -1.69
DDX56Q9NY93 AC100763.1-201ENST00000532735 522 ntTSL 3 BASIC4.48□□□□□ -1.69
DDX56Q9NY93 AC026894.1-202ENST00000533843 477 ntTSL 5 BASIC4.48□□□□□ -1.69
DDX56Q9NY93 AC245505.1-201ENST00000556398 224 ntBASIC4.48□□□□□ -1.69
DDX56Q9NY93 AC009063.1-201ENST00000563342 702 ntBASIC4.48□□□□□ -1.69
DDX56Q9NY93 AC010547.2-201ENST00000568523 409 ntTSL 5 BASIC4.48□□□□□ -1.69
DDX56Q9NY93 AC010546.1-201ENST00000569391 485 ntBASIC4.48□□□□□ -1.69
DDX56Q9NY93 AC012417.1-201ENST00000582307 1039 ntBASIC4.48□□□□□ -1.69
DDX56Q9NY93 AC234771.5-201ENST00000600161 514 ntBASIC4.48□□□□□ -1.69
DDX56Q9NY93 AC113403.1-201ENST00000604910 193 ntBASIC4.48□□□□□ -1.69
DDX56Q9NY93 AP002360.4-201ENST00000606980 481 ntBASIC4.48□□□□□ -1.69
DDX56Q9NY93 LINC00343-210ENST00000608220 806 ntTSL 5 BASIC4.48□□□□□ -1.69
DDX56Q9NY93 AC087241.4-201ENST00000612441 480 ntBASIC4.48□□□□□ -1.69
DDX56Q9NY93 AC097478.4-201ENST00000615968 522 ntTSL 5 BASIC4.48□□□□□ -1.69
DDX56Q9NY93 MIR7702-201ENST00000621931 59 ntBASIC4.48□□□□□ -1.69
DDX56Q9NY93 AL359740.1-201ENST00000624340 592 ntBASIC4.48□□□□□ -1.69
DDX56Q9NY93 USH2A-202ENST00000366942 6320 ntTSL 1 (best) BASIC4.48□□□□□ -1.69
DDX56Q9NY93 MBD5-202ENST00000407073 9512 ntTSL 1 (best) BASIC4.48□□□□□ -1.69
DDX56Q9NY93 C6orf10-207ENST00000533191 2170 ntAPPRIS ALT2 TSL 1 (best) BASIC4.48□□□□□ -1.69
DDX56Q9NY93 CR848007.1-201ENST00000442354 1699 ntBASIC4.48□□□□□ -1.69
DDX56Q9NY93 DMXL2-202ENST00000449909 7465 ntAPPRIS ALT2 TSL 1 (best) BASIC4.48□□□□□ -1.69
DDX56Q9NY93 SLC17A4-203ENST00000439485 3699 ntTSL 5 BASIC4.48□□□□□ -1.69
DDX56Q9NY93 PLCL1-203ENST00000437704 5979 ntTSL 1 (best) BASIC4.47□□□□□ -1.69
DDX56Q9NY93 RANBP2-201ENST00000283195 11711 ntAPPRIS P1 TSL 1 (best) BASIC4.47□□□□□ -1.69
DDX56Q9NY93 ZNF807-201ENST00000328088 1707 ntBASIC4.47□□□□□ -1.69
DDX56Q9NY93 FAM35BP-202ENST00000497389 3337 ntBASIC4.47□□□□□ -1.69
DDX56Q9NY93 MIR331-201ENST00000362302 94 ntBASIC4.47□□□□□ -1.69
DDX56Q9NY93 RNU6-1097P-201ENST00000363586 107 ntBASIC4.47□□□□□ -1.69
DDX56Q9NY93 RNU6-169P-201ENST00000365336 107 ntBASIC4.47□□□□□ -1.69
DDX56Q9NY93 TSHB-202ENST00000369517 474 ntAPPRIS P1 TSL 1 (best) BASIC4.47□□□□□ -1.69
DDX56Q9NY93 TCEANC-201ENST00000380600 2988 ntAPPRIS P1 TSL 3 BASIC4.47□□□□□ -1.69
DDX56Q9NY93 MIR129-1-201ENST00000384972 72 ntBASIC4.47□□□□□ -1.69
DDX56Q9NY93 FGFR1OP2P1-201ENST00000395943 500 ntBASIC4.47□□□□□ -1.69
DDX56Q9NY93 RPS16P5-201ENST00000406501 404 ntBASIC4.47□□□□□ -1.69
DDX56Q9NY93 U3.42-201ENST00000408746 214 ntBASIC4.47□□□□□ -1.69
DDX56Q9NY93 RPS27L-202ENST00000411926 528 ntTSL 3 BASIC4.47□□□□□ -1.69
DDX56Q9NY93 MTCO1P21-201ENST00000416634 589 ntBASIC4.47□□□□□ -1.69
DDX56Q9NY93 AC009158.1-206ENST00000417476 454 ntTSL 3 BASIC4.47□□□□□ -1.69
DDX56Q9NY93 ZNF90P2-204ENST00000419323 1075 ntBASIC4.47□□□□□ -1.69
DDX56Q9NY93 RPEP3-201ENST00000425462 676 ntBASIC4.47□□□□□ -1.69
DDX56Q9NY93 MED13P1-201ENST00000428342 171 ntBASIC4.47□□□□□ -1.69
DDX56Q9NY93 FCF1P1-201ENST00000432690 571 ntBASIC4.47□□□□□ -1.69
DDX56Q9NY93 GPR143P-201ENST00000434155 205 ntBASIC4.47□□□□□ -1.69
DDX56Q9NY93 NDUFB4P6-201ENST00000436819 366 ntBASIC4.47□□□□□ -1.69
DDX56Q9NY93 AL772161.1-201ENST00000439130 476 ntBASIC4.47□□□□□ -1.69
DDX56Q9NY93 AL512326.1-201ENST00000443050 721 ntBASIC4.47□□□□□ -1.69
DDX56Q9NY93 SNAP25-AS1-205ENST00000453544 368 ntTSL 5 BASIC4.47□□□□□ -1.69
DDX56Q9NY93 RPL23AP81-201ENST00000455252 467 ntBASIC4.47□□□□□ -1.69
DDX56Q9NY93 AC022364.2-201ENST00000457963 554 ntBASIC4.47□□□□□ -1.69
DDX56Q9NY93 CDKN3-205ENST00000458126 845 ntAPPRIS ALT2 TSL 5 BASIC4.47□□□□□ -1.69
DDX56Q9NY93 GRM7-AS3-209ENST00000458713 454 ntTSL 3 BASIC4.47□□□□□ -1.69
DDX56Q9NY93 RPS20P22-201ENST00000473700 357 ntBASIC4.47□□□□□ -1.69
DDX56Q9NY93 ANKRD7-204ENST00000477532 744 ntTSL 5 BASIC4.47□□□□□ -1.69
DDX56Q9NY93 AC004924.1-201ENST00000480160 781 ntBASIC4.47□□□□□ -1.69
DDX56Q9NY93 AC023194.1-201ENST00000493084 308 ntBASIC4.47□□□□□ -1.69
DDX56Q9NY93 RPL30P5-201ENST00000494923 336 ntBASIC4.47□□□□□ -1.69
DDX56Q9NY93 RNA5SP154-201ENST00000516193 111 ntBASIC4.47□□□□□ -1.69
DDX56Q9NY93 SMIM18-201ENST00000517349 905 ntAPPRIS P1 TSL 2 BASIC4.47□□□□□ -1.69
DDX56Q9NY93 HDAC2-AS2-206ENST00000517965 850 ntTSL 3 BASIC4.47□□□□□ -1.69
DDX56Q9NY93 MYL12AP1-201ENST00000518490 515 ntBASIC4.47□□□□□ -1.69
DDX56Q9NY93 HMGB1P41-201ENST00000520234 440 ntBASIC4.47□□□□□ -1.69
DDX56Q9NY93 AC027804.1-201ENST00000534653 529 ntTSL 2 BASIC4.47□□□□□ -1.69
DDX56Q9NY93 KLRC2-204ENST00000536833 771 ntTSL 5 BASIC4.47□□□□□ -1.69
DDX56Q9NY93 AC099793.1-201ENST00000567538 285 ntTSL 3 BASIC4.47□□□□□ -1.69
DDX56Q9NY93 PSMD5-AS1-203ENST00000589026 525 ntTSL 5 BASIC4.47□□□□□ -1.69
DDX56Q9NY93 GLUD1P4-201ENST00000590914 418 ntBASIC4.47□□□□□ -1.69
DDX56Q9NY93 AC015813.4-201ENST00000610469 179 ntBASIC4.47□□□□□ -1.69
DDX56Q9NY93 AL390240.1-201ENST00000612950 384 ntBASIC4.47□□□□□ -1.69
DDX56Q9NY93 AC136475.10-201ENST00000620253 385 ntBASIC4.47□□□□□ -1.69
DDX56Q9NY93 AC138649.3-201ENST00000622154 254 ntBASIC4.47□□□□□ -1.69
DDX56Q9NY93 AC068880.5-201ENST00000624331 290 ntBASIC4.47□□□□□ -1.69
DDX56Q9NY93 LINC01002-227ENST00000633363 541 ntTSL 1 (best) BASIC4.47□□□□□ -1.69
DDX56Q9NY93 AC140479.6-201ENST00000633535 357 ntBASIC4.47□□□□□ -1.69
DDX56Q9NY93 AL591441.1-201ENST00000618108 2247 ntTSL 2 BASIC4.47□□□□□ -1.69
DDX56Q9NY93 SLC25A17-202ENST00000402844 2405 ntTSL 2 BASIC4.47□□□□□ -1.69
DDX56Q9NY93 DTNA-208ENST00000554864 1680 ntAPPRIS ALT2 TSL 1 (best) BASIC4.47□□□□□ -1.69
DDX56Q9NY93 ST7-221ENST00000465133 2155 ntTSL 5 BASIC4.47□□□□□ -1.69
DDX56Q9NY93 ZNF43-207ENST00000595461 3399 ntAPPRIS ALT2 TSL 1 (best) BASIC4.47□□□□□ -1.69
DDX56Q9NY93 THOC1-221ENST00000631280 2011 ntTSL 5 BASIC4.46□□□□□ -1.69
DDX56Q9NY93 ETV1-203ENST00000403527 3363 ntTSL 1 (best) BASIC4.46□□□□□ -1.7
DDX56Q9NY93 SCEL-202ENST00000377246 3081 ntAPPRIS ALT2 TSL 1 (best) BASIC4.46□□□□□ -1.7
DDX56Q9NY93 CASC1-203ENST00000395987 2363 ntAPPRIS P3 TSL 1 (best) BASIC4.46□□□□□ -1.7
DDX56Q9NY93 RNA5SP388-201ENST00000362584 119 ntBASIC4.46□□□□□ -1.7
DDX56Q9NY93 SNORA58B-201ENST00000364259 136 ntBASIC4.46□□□□□ -1.7
DDX56Q9NY93 RNVU1-6-201ENST00000364688 164 ntBASIC4.46□□□□□ -1.7
DDX56Q9NY93 LZIC-201ENST00000377213 945 ntAPPRIS P1 TSL 1 (best) BASIC4.46□□□□□ -1.7
DDX56Q9NY93 CRLS1-202ENST00000378868 994 ntTSL 5 BASIC4.46□□□□□ -1.7
DDX56Q9NY93 RNU6-741P-201ENST00000383889 107 ntBASIC4.46□□□□□ -1.7
DDX56Q9NY93 MIR558-201ENST00000384920 94 ntBASIC4.46□□□□□ -1.7
DDX56Q9NY93 GSTA9P-201ENST00000406231 611 ntBASIC4.46□□□□□ -1.7
DDX56Q9NY93 MIR1179-201ENST00000408703 91 ntBASIC4.46□□□□□ -1.7
DDX56Q9NY93 CYP4F29P-201ENST00000420685 446 ntBASIC4.46□□□□□ -1.7
DDX56Q9NY93 MYCBP2-AS1-201ENST00000422231 519 ntTSL 3 BASIC4.46□□□□□ -1.7
DDX56Q9NY93 RPL23AP1-201ENST00000428990 471 ntBASIC4.46□□□□□ -1.7
DDX56Q9NY93 AL358934.1-201ENST00000432346 324 ntBASIC4.46□□□□□ -1.7
DDX56Q9NY93 RPL36AP6-201ENST00000435770 321 ntBASIC4.46□□□□□ -1.7
DDX56Q9NY93 TAAR7P-201ENST00000436141 242 ntBASIC4.46□□□□□ -1.7
DDX56Q9NY93 ATP5C1P1-201ENST00000441945 895 ntBASIC4.46□□□□□ -1.7
DDX56Q9NY93 CBWD4P-201ENST00000445695 655 ntBASIC4.46□□□□□ -1.7
Retrieved 100 of 98,524 protein–RNA pairs in 155.6 ms