Protein–RNA interactions for Protein: Q92994

BRF1, Transcription factor IIIB 90 kDa subunit, humanhuman

Predictions only

Length 677 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRF1Q92994 LINC00971-201ENST00000482721 535 ntTSL 2 BASIC5.1□□□□□ -1.59
BRF1Q92994 ANKRD36B-207ENST00000497329 649 ntTSL 1 (best) BASIC5.1□□□□□ -1.59
BRF1Q92994 NEAT1-202ENST00000501122 22743 ntBASIC5.1□□□□□ -1.59
BRF1Q92994 AC004053.1-201ENST00000515127 575 ntTSL 5 BASIC5.1□□□□□ -1.59
BRF1Q92994 AC009652.2-201ENST00000527978 516 ntTSL 5 BASIC5.1□□□□□ -1.59
BRF1Q92994 AC008250.1-201ENST00000539874 522 ntTSL 3 BASIC5.1□□□□□ -1.59
BRF1Q92994 AC078778.1-201ENST00000547177 735 ntTSL 3 BASIC5.1□□□□□ -1.59
BRF1Q92994 AC005668.1-201ENST00000571142 476 ntBASIC5.1□□□□□ -1.59
BRF1Q92994 AC116003.1-202ENST00000579386 501 ntTSL 3 BASIC5.1□□□□□ -1.59
BRF1Q92994 MIR4742-201ENST00000581069 85 ntBASIC5.1□□□□□ -1.59
BRF1Q92994 EAF1-AS1-211ENST00000610011 316 ntTSL 5 BASIC5.1□□□□□ -1.59
BRF1Q92994 SMCR2_2.1-201ENST00000619783 161 ntBASIC5.1□□□□□ -1.59
BRF1Q92994 C2orf27A-204ENST00000623058 969 ntBASIC5.1□□□□□ -1.59
BRF1Q92994 XIRP2-207ENST00000628543 12182 ntTSL 5 BASIC5.1□□□□□ -1.59
BRF1Q92994 ITCH-202ENST00000374864 6401 ntAPPRIS P1 TSL 1 (best) BASIC5.1□□□□□ -1.59
BRF1Q92994 AC000123.3-201ENST00000624029 4975 ntBASIC5.1□□□□□ -1.59
BRF1Q92994 PARP8-201ENST00000281631 7177 ntAPPRIS P1 TSL 1 (best) BASIC5.1□□□□□ -1.59
BRF1Q92994 MS4A1-201ENST00000345732 3331 ntAPPRIS P1 TSL 1 (best) BASIC5.09□□□□□ -1.59
BRF1Q92994 ZNF765-201ENST00000396408 4569 ntAPPRIS P1 TSL 1 (best) BASIC5.09□□□□□ -1.59
BRF1Q92994 CAST-207ENST00000395813 4356 ntAPPRIS ALT2 TSL 5 BASIC5.09□□□□□ -1.59
BRF1Q92994 CNGA1-209ENST00000544810 2722 ntAPPRIS ALT2 TSL 5 BASIC5.09□□□□□ -1.59
BRF1Q92994 SNCA-AS1-201ENST00000501215 2646 ntTSL 2 BASIC5.09□□□□□ -1.59
BRF1Q92994 AL139276.1-201ENST00000311910 1001 ntBASIC5.09□□□□□ -1.59
BRF1Q92994 WFDC9-201ENST00000326000 659 ntAPPRIS P1 TSL 1 (best) BASIC5.09□□□□□ -1.59
BRF1Q92994 HSPE1P11-201ENST00000339579 310 ntBASIC5.09□□□□□ -1.59
BRF1Q92994 SNORA32.2-201ENST00000384049 122 ntBASIC5.09□□□□□ -1.59
BRF1Q92994 Y_RNA.474-201ENST00000384341 102 ntBASIC5.09□□□□□ -1.59
BRF1Q92994 AL354726.1-201ENST00000411981 402 ntTSL 2 BASIC5.09□□□□□ -1.59
BRF1Q92994 AC007314.1-201ENST00000414538 565 ntTSL 4 BASIC5.09□□□□□ -1.59
BRF1Q92994 LINC01492-202ENST00000425157 659 ntTSL 5 BASIC5.09□□□□□ -1.59
BRF1Q92994 MTCO2P12-201ENST00000427426 682 ntBASIC5.09□□□□□ -1.59
BRF1Q92994 GEMIN8P3-201ENST00000445417 720 ntBASIC5.09□□□□□ -1.59
BRF1Q92994 AL035634.1-201ENST00000446768 372 ntTSL 2 BASIC5.09□□□□□ -1.59
BRF1Q92994 MRPS17P3-201ENST00000465453 385 ntBASIC5.09□□□□□ -1.59
BRF1Q92994 AC007537.2-201ENST00000472093 511 ntBASIC5.09□□□□□ -1.59
BRF1Q92994 AC022795.1-201ENST00000473808 480 ntBASIC5.09□□□□□ -1.59
BRF1Q92994 AC091885.1-201ENST00000506658 268 ntBASIC5.09□□□□□ -1.59
BRF1Q92994 PPBPP1-201ENST00000510807 373 ntBASIC5.09□□□□□ -1.59
BRF1Q92994 AC015795.1-201ENST00000513669 327 ntBASIC5.09□□□□□ -1.59
BRF1Q92994 RNU4-29P-201ENST00000515943 174 ntBASIC5.09□□□□□ -1.59
BRF1Q92994 IGLVIV-53-201ENST00000520107 367 ntBASIC5.09□□□□□ -1.59
BRF1Q92994 AP003072.1-201ENST00000531740 145 ntBASIC5.09□□□□□ -1.59
BRF1Q92994 FBXO3-AS1-202ENST00000533046 386 ntTSL 3 BASIC5.09□□□□□ -1.59
BRF1Q92994 AL132780.1-201ENST00000548819 556 ntTSL 4 BASIC5.09□□□□□ -1.59
BRF1Q92994 AC025588.3-201ENST00000604182 274 ntBASIC5.09□□□□□ -1.59
BRF1Q92994 AC113403.1-201ENST00000604910 193 ntBASIC5.09□□□□□ -1.59
BRF1Q92994 AL121992.2-201ENST00000606262 256 ntBASIC5.09□□□□□ -1.59
BRF1Q92994 AL133255.1-201ENST00000606374 441 ntBASIC5.09□□□□□ -1.59
BRF1Q92994 RNU6-89P-201ENST00000606519 100 ntBASIC5.09□□□□□ -1.59
BRF1Q92994 AC090948.1-201ENST00000607464 549 ntBASIC5.09□□□□□ -1.59
BRF1Q92994 AC004908.2-201ENST00000609090 574 ntBASIC5.09□□□□□ -1.59
BRF1Q92994 RN7SL722P-201ENST00000617780 284 ntBASIC5.09□□□□□ -1.59
BRF1Q92994 uc_338.13-201ENST00000618243 179 ntBASIC5.09□□□□□ -1.59
BRF1Q92994 RN7SL565P-201ENST00000618246 284 ntBASIC5.09□□□□□ -1.59
BRF1Q92994 ATM-228ENST00000639240 498 ntTSL 5 BASIC5.09□□□□□ -1.59
BRF1Q92994 ATM-230ENST00000640388 578 ntTSL 5 BASIC5.09□□□□□ -1.59
BRF1Q92994 AL596275.2-204ENST00000641628 552 ntBASIC5.09□□□□□ -1.59
BRF1Q92994 AL596275.2-206ENST00000641957 626 ntBASIC5.09□□□□□ -1.59
BRF1Q92994 ZNF594-201ENST00000399604 4862 ntAPPRIS P1 BASIC5.09□□□□□ -1.59
BRF1Q92994 STARD4-201ENST00000296632 4606 ntAPPRIS P1 TSL 2 BASIC5.09□□□□□ -1.59
BRF1Q92994 ORC4-216ENST00000540442 6472 ntTSL 2 BASIC5.09□□□□□ -1.59
BRF1Q92994 C2orf73-202ENST00000398634 1921 ntAPPRIS P1 TSL 1 (best) BASIC5.09□□□□□ -1.6
BRF1Q92994 PTPRC-201ENST00000348564 4626 ntAPPRIS ALT2 TSL 1 (best) BASIC5.09□□□□□ -1.6
BRF1Q92994 RANBP2-201ENST00000283195 11711 ntAPPRIS P1 TSL 1 (best) BASIC5.08□□□□□ -1.6
BRF1Q92994 PRG4-202ENST00000367483 4921 ntTSL 5 BASIC5.08□□□□□ -1.6
BRF1Q92994 RACGAP1-202ENST00000427314 3229 ntAPPRIS P1 TSL 1 (best) BASIC5.08□□□□□ -1.6
BRF1Q92994 ABCB5-201ENST00000258738 2906 ntTSL 1 (best) BASIC5.08□□□□□ -1.6
BRF1Q92994 TRAPPC13-208ENST00000505553 1410 ntAPPRIS ALT1 TSL 1 (best) BASIC5.08□□□□□ -1.6
BRF1Q92994 SYTL2-217ENST00000528231 3536 ntAPPRIS ALT1 TSL 1 (best) BASIC5.08□□□□□ -1.6
BRF1Q92994 ACADM-203ENST00000420607 1332 ntAPPRIS ALT1 TSL 1 (best) BASIC5.08□□□□□ -1.6
BRF1Q92994 Y_RNA.100-201ENST00000363141 102 ntBASIC5.08□□□□□ -1.6
BRF1Q92994 RNU6-511P-201ENST00000363496 107 ntBASIC5.08□□□□□ -1.6
BRF1Q92994 RNA5SP175-201ENST00000364275 119 ntBASIC5.08□□□□□ -1.6
BRF1Q92994 TRAJ32-201ENST00000390505 66 ntAPPRIS P1 BASIC5.08□□□□□ -1.6
BRF1Q92994 U3.29-201ENST00000391296 212 ntBASIC5.08□□□□□ -1.6
BRF1Q92994 RN7SKP247-201ENST00000411094 308 ntBASIC5.08□□□□□ -1.6
BRF1Q92994 AP000943.1-201ENST00000438416 712 ntTSL 3 BASIC5.08□□□□□ -1.6
BRF1Q92994 HMGB1P18-201ENST00000438801 619 ntBASIC5.08□□□□□ -1.6
BRF1Q92994 PHBP16-201ENST00000446318 950 ntBASIC5.08□□□□□ -1.6
BRF1Q92994 AC002553.2-201ENST00000453217 340 ntBASIC5.08□□□□□ -1.6
BRF1Q92994 AC007547.1-201ENST00000462177 490 ntBASIC5.08□□□□□ -1.6
BRF1Q92994 AC121764.1-201ENST00000472238 563 ntTSL 4 BASIC5.08□□□□□ -1.6
BRF1Q92994 MTND5P5-201ENST00000503764 376 ntBASIC5.08□□□□□ -1.6
BRF1Q92994 SLC7A11-AS1-201ENST00000510066 817 ntTSL 2 BASIC5.08□□□□□ -1.6
BRF1Q92994 SLIT2-IT1-201ENST00000515882 601 ntTSL 1 (best) BASIC5.08□□□□□ -1.6
BRF1Q92994 RNU4-49P-201ENST00000516080 140 ntBASIC5.08□□□□□ -1.6
BRF1Q92994 RNU2-10P-201ENST00000516375 211 ntBASIC5.08□□□□□ -1.6
BRF1Q92994 RN7SKP219-201ENST00000516825 296 ntBASIC5.08□□□□□ -1.6
BRF1Q92994 AC079209.2-201ENST00000519107 431 ntTSL 3 BASIC5.08□□□□□ -1.6
BRF1Q92994 AC015468.4-201ENST00000523496 568 ntTSL 4 BASIC5.08□□□□□ -1.6
BRF1Q92994 AC129492.2-201ENST00000577807 517 ntTSL 3 BASIC5.08□□□□□ -1.6
BRF1Q92994 MIR4512-201ENST00000583257 77 ntBASIC5.08□□□□□ -1.6
BRF1Q92994 AC011477.5-201ENST00000586571 259 ntBASIC5.08□□□□□ -1.6
BRF1Q92994 AP001029.3-201ENST00000588063 596 ntBASIC5.08□□□□□ -1.6
BRF1Q92994 AC002115.1-201ENST00000589603 568 ntTSL 4 BASIC5.08□□□□□ -1.6
BRF1Q92994 LINC01515-204ENST00000595269 402 ntTSL 5 BASIC5.08□□□□□ -1.6
BRF1Q92994 AC083798.2-205ENST00000608015 575 ntTSL 5 BASIC5.08□□□□□ -1.6
BRF1Q92994 AL590099.1-201ENST00000615276 138 ntBASIC5.08□□□□□ -1.6
BRF1Q92994 LINC01002-227ENST00000633363 541 ntTSL 1 (best) BASIC5.08□□□□□ -1.6
BRF1Q92994 BX088723.1-201ENST00000637785 708 ntTSL 5 BASIC5.08□□□□□ -1.6
Retrieved 100 of 98,524 protein–RNA pairs in 98.3 ms