Protein–RNA interactions for Protein: Q8NF91

SYNE1, Nesprin-1, humanhuman

Known RBP Predictions only

Length 8,797 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1Q8NF91 TSHB-201ENST00000256592 537 ntAPPRIS P1 TSL 5 BASIC0.65□□□□□ -2.3
SYNE1Q8NF91 PPP3R1-202ENST00000409377 684 ntTSL 3 BASIC0.65□□□□□ -2.3
SYNE1Q8NF91 RNU2-71P-201ENST00000411395 189 ntBASIC0.65□□□□□ -2.3
SYNE1Q8NF91 AC096632.1-201ENST00000427395 310 ntBASIC0.65□□□□□ -2.3
SYNE1Q8NF91 MND1-203ENST00000504860 638 ntTSL 1 (best) BASIC0.65□□□□□ -2.3
SYNE1Q8NF91 AC093297.2-207ENST00000505401 692 ntTSL 3 BASIC0.65□□□□□ -2.3
SYNE1Q8NF91 AC107398.2-201ENST00000508081 601 ntTSL 5 BASIC0.65□□□□□ -2.3
SYNE1Q8NF91 AC060766.3-201ENST00000591442 263 ntBASIC0.65□□□□□ -2.3
SYNE1Q8NF91 AC245517.5-201ENST00000611529 162 ntBASIC0.65□□□□□ -2.3
SYNE1Q8NF91 AC092650.2-201ENST00000619984 902 ntBASIC0.65□□□□□ -2.3
SYNE1Q8NF91 RBMS3-AS3-202ENST00000635847 738 ntTSL 5 BASIC0.65□□□□□ -2.3
SYNE1Q8NF91 SEL1L2-201ENST00000284951 2224 ntAPPRIS P1 TSL 5 BASIC0.65□□□□□ -2.31
SYNE1Q8NF91 Y_RNA.205-201ENST00000364128 113 ntBASIC0.65□□□□□ -2.31
SYNE1Q8NF91 MTCO2P17-201ENST00000424336 677 ntBASIC0.65□□□□□ -2.31
SYNE1Q8NF91 AC009987.1-201ENST00000446888 806 ntTSL 5 BASIC0.65□□□□□ -2.31
SYNE1Q8NF91 AC097491.1-201ENST00000507857 672 ntTSL 5 BASIC0.65□□□□□ -2.31
SYNE1Q8NF91 AC012625.1-201ENST00000515153 625 ntTSL 5 BASIC0.65□□□□□ -2.31
SYNE1Q8NF91 RNA5SP337-201ENST00000517007 109 ntBASIC0.65□□□□□ -2.31
SYNE1Q8NF91 AC008562.1-201ENST00000521763 330 ntBASIC0.65□□□□□ -2.31
SYNE1Q8NF91 LINC02552-203ENST00000545630 583 ntTSL 2 BASIC0.65□□□□□ -2.31
SYNE1Q8NF91 AC007513.1-201ENST00000548740 379 ntTSL 3 BASIC0.65□□□□□ -2.31
SYNE1Q8NF91 AC019080.3-201ENST00000606180 444 ntTSL 5 BASIC0.65□□□□□ -2.31
SYNE1Q8NF91 CCDC178-213ENST00000583930 3094 ntAPPRIS ALT2 TSL 1 (best) BASIC0.65□□□□□ -2.31
SYNE1Q8NF91 OR5M1-202ENST00000641076 4302 ntAPPRIS P1 BASIC0.65□□□□□ -2.31
SYNE1Q8NF91 DEFB135-201ENST00000382208 234 ntAPPRIS P1 TSL 1 (best) BASIC0.65□□□□□ -2.31
SYNE1Q8NF91 AC109780.2-201ENST00000413467 845 ntBASIC0.65□□□□□ -2.31
SYNE1Q8NF91 AL078581.1-201ENST00000419134 340 ntTSL 5 BASIC0.65□□□□□ -2.31
SYNE1Q8NF91 RPS3AP4-201ENST00000555161 764 ntBASIC0.65□□□□□ -2.31
SYNE1Q8NF91 AC011494.1-201ENST00000596454 237 ntBASIC0.65□□□□□ -2.31
SYNE1Q8NF91 AC008764.2-201ENST00000597226 376 ntTSL 5 BASIC0.65□□□□□ -2.31
SYNE1Q8NF91 AC006329.2-201ENST00000611491 394 ntBASIC0.65□□□□□ -2.31
SYNE1Q8NF91 MUCL1-205ENST00000619042 243 ntAPPRIS ALT2 TSL 5 BASIC0.65□□□□□ -2.31
SYNE1Q8NF91 SATB1-AS1-266ENST00000630271 813 ntTSL 5 BASIC0.65□□□□□ -2.31
SYNE1Q8NF91 PLCZ1-209ENST00000539875 1398 ntTSL 1 (best) BASIC0.65□□□□□ -2.31
SYNE1Q8NF91 LIPI-204ENST00000614229 1439 ntTSL 1 (best) BASIC0.65□□□□□ -2.31
SYNE1Q8NF91 RPL9P9-201ENST00000418824 636 ntTSL 2 BASIC0.65□□□□□ -2.31
SYNE1Q8NF91 RPS7P5-201ENST00000441482 581 ntBASIC0.65□□□□□ -2.31
SYNE1Q8NF91 AC096992.1-201ENST00000459808 709 ntBASIC0.65□□□□□ -2.31
SYNE1Q8NF91 AC073901.1-201ENST00000462471 408 ntBASIC0.65□□□□□ -2.31
SYNE1Q8NF91 AC021146.8-201ENST00000507455 733 ntBASIC0.65□□□□□ -2.31
SYNE1Q8NF91 SNORA31.26-201ENST00000517250 137 ntBASIC0.65□□□□□ -2.31
SYNE1Q8NF91 AC018861.2-201ENST00000518078 513 ntTSL 2 BASIC0.65□□□□□ -2.31
SYNE1Q8NF91 OR4R2P-201ENST00000530815 597 ntBASIC0.65□□□□□ -2.31
SYNE1Q8NF91 AL161713.1-201ENST00000555538 145 ntBASIC0.65□□□□□ -2.31
SYNE1Q8NF91 AC022960.1-201ENST00000582269 348 ntTSL 3 BASIC0.65□□□□□ -2.31
SYNE1Q8NF91 AC068544.1-201ENST00000635064 248 ntTSL 5 BASIC0.65□□□□□ -2.31
SYNE1Q8NF91 MIR203B-201ENST00000636080 86 ntBASIC0.65□□□□□ -2.31
SYNE1Q8NF91 RNU6-50P-201ENST00000362356 103 ntBASIC0.65□□□□□ -2.31
SYNE1Q8NF91 AP001117.1-201ENST00000428205 609 ntTSL 2 BASIC0.65□□□□□ -2.31
SYNE1Q8NF91 IKZF2-209ENST00000442445 551 ntTSL 5 BASIC0.65□□□□□ -2.31
SYNE1Q8NF91 RPL34P26-201ENST00000445636 354 ntBASIC0.65□□□□□ -2.31
SYNE1Q8NF91 MTND2P8-201ENST00000450555 1025 ntBASIC0.65□□□□□ -2.31
SYNE1Q8NF91 AP000852.1-201ENST00000472460 573 ntBASIC0.65□□□□□ -2.31
SYNE1Q8NF91 RPL21P131-201ENST00000497298 483 ntBASIC0.65□□□□□ -2.31
SYNE1Q8NF91 SPINK7-205ENST00000523535 299 ntTSL 2 BASIC0.65□□□□□ -2.31
SYNE1Q8NF91 AC021698.1-201ENST00000524858 716 ntTSL 3 BASIC0.65□□□□□ -2.31
SYNE1Q8NF91 DEUP1-203ENST00000527307 767 ntTSL 3 BASIC0.65□□□□□ -2.31
SYNE1Q8NF91 LINC02460-201ENST00000543558 536 ntTSL 4 BASIC0.65□□□□□ -2.31
SYNE1Q8NF91 AL354943.1-201ENST00000572103 781 ntBASIC0.65□□□□□ -2.31
SYNE1Q8NF91 AL022099.1-201ENST00000604551 712 ntBASIC0.65□□□□□ -2.31
SYNE1Q8NF91 AASDH-207ENST00000513376 3241 ntTSL 1 (best) BASIC0.65□□□□□ -2.31
SYNE1Q8NF91 MIR378A-201ENST00000362177 66 ntBASIC0.65□□□□□ -2.31
SYNE1Q8NF91 AL122008.1-201ENST00000456078 452 ntTSL 3 BASIC0.65□□□□□ -2.31
SYNE1Q8NF91 FAM104B-204ENST00000472571 1109 ntAPPRIS ALT2 TSL 1 (best) BASIC0.65□□□□□ -2.31
SYNE1Q8NF91 LNX1-AS2-201ENST00000502410 347 ntTSL 5 BASIC0.65□□□□□ -2.31
SYNE1Q8NF91 RNA5SP468-201ENST00000516782 93 ntBASIC0.65□□□□□ -2.31
SYNE1Q8NF91 RNU1-104P-201ENST00000517280 175 ntBASIC0.65□□□□□ -2.31
SYNE1Q8NF91 ZNF84-205ENST00000535439 647 ntTSL 5 BASIC0.65□□□□□ -2.31
SYNE1Q8NF91 REXO2-218ENST00000544827 880 ntTSL 3 BASIC0.65□□□□□ -2.31
SYNE1Q8NF91 AC034102.8-201ENST00000615146 484 ntBASIC0.65□□□□□ -2.31
SYNE1Q8NF91 PABPC1P7-201ENST00000413177 1513 ntBASIC0.65□□□□□ -2.31
SYNE1Q8NF91 SERPINI2-206ENST00000471111 1331 ntAPPRIS P1 TSL 1 (best) BASIC0.64□□□□□ -2.31
SYNE1Q8NF91 NUP35-203ENST00000409798 1470 ntTSL 2 BASIC0.64□□□□□ -2.31
SYNE1Q8NF91 SI-201ENST00000264382 6011 ntAPPRIS P1 TSL 1 (best) BASIC0.64□□□□□ -2.31
SYNE1Q8NF91 RNY1P14-201ENST00000384426 108 ntBASIC0.64□□□□□ -2.31
SYNE1Q8NF91 RN7SKP140-201ENST00000411196 284 ntBASIC0.64□□□□□ -2.31
SYNE1Q8NF91 HMGN2P38-201ENST00000423806 265 ntBASIC0.64□□□□□ -2.31
SYNE1Q8NF91 AC109583.1-201ENST00000432156 268 ntBASIC0.64□□□□□ -2.31
SYNE1Q8NF91 RPS7P2-201ENST00000435134 607 ntBASIC0.64□□□□□ -2.31
SYNE1Q8NF91 AL441989.1-201ENST00000454204 382 ntTSL 3 BASIC0.64□□□□□ -2.31
SYNE1Q8NF91 AC010625.1-201ENST00000511296 403 ntBASIC0.64□□□□□ -2.31
SYNE1Q8NF91 LINC02480-201ENST00000511875 612 ntTSL 2 BASIC0.64□□□□□ -2.31
SYNE1Q8NF91 CCNHP1-201ENST00000513311 678 ntBASIC0.64□□□□□ -2.31
SYNE1Q8NF91 AC090833.1-201ENST00000513853 806 ntTSL 3 BASIC0.64□□□□□ -2.31
SYNE1Q8NF91 AC239860.2-201ENST00000525886 270 ntBASIC0.64□□□□□ -2.31
SYNE1Q8NF91 MS4A1-205ENST00000528313 928 ntTSL 2 BASIC0.64□□□□□ -2.31
SYNE1Q8NF91 AP000857.2-201ENST00000532123 419 ntTSL 3 BASIC0.64□□□□□ -2.31
SYNE1Q8NF91 AC073591.1-201ENST00000552736 597 ntTSL 3 BASIC0.64□□□□□ -2.31
SYNE1Q8NF91 AC006557.3-201ENST00000592926 517 ntTSL 3 BASIC0.64□□□□□ -2.31
SYNE1Q8NF91 KTN1-203ENST00000395309 4021 ntAPPRIS ALT2 TSL 5 BASIC0.64□□□□□ -2.31
SYNE1Q8NF91 SMARCAD1-206ENST00000509418 2348 ntTSL 2 BASIC0.64□□□□□ -2.31
SYNE1Q8NF91 RPL31P2-201ENST00000413849 377 ntBASIC0.64□□□□□ -2.31
SYNE1Q8NF91 LPP-AS1-201ENST00000434996 494 ntTSL 3 BASIC0.64□□□□□ -2.31
SYNE1Q8NF91 AL031663.1-201ENST00000437445 219 ntBASIC0.64□□□□□ -2.31
SYNE1Q8NF91 AC003988.1-201ENST00000447198 578 ntTSL 5 BASIC0.64□□□□□ -2.31
SYNE1Q8NF91 AC005912.1-201ENST00000495392 255 ntBASIC0.64□□□□□ -2.31
SYNE1Q8NF91 GTF2IP9-201ENST00000502460 301 ntBASIC0.64□□□□□ -2.31
SYNE1Q8NF91 AC022272.1-201ENST00000503478 777 ntTSL 2 BASIC0.64□□□□□ -2.31
SYNE1Q8NF91 AP001960.1-201ENST00000506494 658 ntBASIC0.64□□□□□ -2.31
SYNE1Q8NF91 LINC02315-201ENST00000515218 696 ntTSL 5 BASIC0.64□□□□□ -2.31
Retrieved 100 of 98,524 protein–RNA pairs in 106.1 ms