Protein–RNA interactions for Protein: P49639

HOXA1, Homeobox protein Hox-A1, humanhuman

Predicted RBP Predictions only

Length 335 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA1P49639 LINC01780-201ENST00000420059 442 ntTSL 2 BASIC3.32□□□□□ -1.88
HOXA1P49639 RPEP3-201ENST00000425462 676 ntBASIC3.32□□□□□ -1.88
HOXA1P49639 AL160411.1-201ENST00000429853 400 ntTSL 2 BASIC3.32□□□□□ -1.88
HOXA1P49639 ARPC3P1-201ENST00000437218 533 ntBASIC3.32□□□□□ -1.88
HOXA1P49639 CYCSP43-201ENST00000438233 310 ntBASIC3.32□□□□□ -1.88
HOXA1P49639 RAC1P7-201ENST00000445367 377 ntBASIC3.32□□□□□ -1.88
HOXA1P49639 MTND1P1-201ENST00000445453 368 ntBASIC3.32□□□□□ -1.88
HOXA1P49639 RPS29P31-201ENST00000446147 164 ntBASIC3.32□□□□□ -1.88
HOXA1P49639 TPT1P14-201ENST00000448018 505 ntBASIC3.32□□□□□ -1.88
HOXA1P49639 AL500522.2-201ENST00000448562 343 ntBASIC3.32□□□□□ -1.88
HOXA1P49639 AC073264.2-201ENST00000448886 166 ntBASIC3.32□□□□□ -1.88
HOXA1P49639 CDKN3-205ENST00000458126 845 ntAPPRIS ALT2 TSL 5 BASIC3.32□□□□□ -1.88
HOXA1P49639 AC096554.1-201ENST00000458182 529 ntTSL 5 BASIC3.32□□□□□ -1.88
HOXA1P49639 RN7SL98P-201ENST00000462271 300 ntBASIC3.32□□□□□ -1.88
HOXA1P49639 RPL21P103-201ENST00000479921 488 ntBASIC3.32□□□□□ -1.88
HOXA1P49639 KRTAP5-14P-201ENST00000502328 121 ntBASIC3.32□□□□□ -1.88
HOXA1P49639 AC008629.1-202ENST00000504820 525 ntTSL 4 BASIC3.32□□□□□ -1.88
HOXA1P49639 AC010587.1-201ENST00000505809 469 ntBASIC3.32□□□□□ -1.88
HOXA1P49639 RNA5SP519-201ENST00000516480 119 ntBASIC3.32□□□□□ -1.88
HOXA1P49639 MTCO2P4-201ENST00000517968 247 ntBASIC3.32□□□□□ -1.88
HOXA1P49639 AC107373.1-201ENST00000522570 603 ntTSL 3 BASIC3.32□□□□□ -1.88
HOXA1P49639 AC136424.2-201ENST00000522582 563 ntTSL 4 BASIC3.32□□□□□ -1.88
HOXA1P49639 DEFB108A-201ENST00000530110 222 ntBASIC3.32□□□□□ -1.88
HOXA1P49639 AL133271.1-201ENST00000538229 291 ntBASIC3.32□□□□□ -1.88
HOXA1P49639 UNC13C-202ENST00000539562 938 ntTSL 1 (best) BASIC3.32□□□□□ -1.88
HOXA1P49639 SETP7-201ENST00000552169 453 ntBASIC3.32□□□□□ -1.88
HOXA1P49639 OR4T1P-201ENST00000554933 911 ntBASIC3.32□□□□□ -1.88
HOXA1P49639 AL358335.2-201ENST00000555693 487 ntTSL 3 BASIC3.32□□□□□ -1.88
HOXA1P49639 RPL23AP87-202ENST00000573039 466 ntBASIC3.32□□□□□ -1.88
HOXA1P49639 LINC01533-202ENST00000588694 632 ntTSL 2 BASIC3.32□□□□□ -1.88
HOXA1P49639 DUXAP4-201ENST00000603046 613 ntBASIC3.32□□□□□ -1.88
HOXA1P49639 AC090948.1-201ENST00000607464 549 ntBASIC3.32□□□□□ -1.88
HOXA1P49639 AC109347.2-201ENST00000610220 349 ntBASIC3.32□□□□□ -1.88
HOXA1P49639 AC068944.2-201ENST00000610373 403 ntBASIC3.32□□□□□ -1.88
HOXA1P49639 AL133173.2-201ENST00000614270 90 ntBASIC3.32□□□□□ -1.88
HOXA1P49639 AC100827.5-201ENST00000615883 426 ntBASIC3.32□□□□□ -1.88
HOXA1P49639 MALAT1-210ENST00000617489 318 ntTSL 2 BASIC3.32□□□□□ -1.88
HOXA1P49639 AL773545.4-201ENST00000637262 310 ntBASIC3.32□□□□□ -1.88
HOXA1P49639 NANOGNB-202ENST00000640040 824 ntAPPRIS ALT2 TSL 5 BASIC3.32□□□□□ -1.88
HOXA1P49639 AL513478.4-201ENST00000641636 310 ntBASIC3.32□□□□□ -1.88
HOXA1P49639 AC012618.3-205ENST00000637896 1496 ntBASIC3.32□□□□□ -1.88
HOXA1P49639 MFF-206ENST00000392059 1710 ntTSL 5 BASIC3.32□□□□□ -1.88
HOXA1P49639 MTND5P27-201ENST00000428871 1720 ntBASIC3.32□□□□□ -1.88
HOXA1P49639 EIF2AP4-201ENST00000424793 1781 ntBASIC3.32□□□□□ -1.88
HOXA1P49639 RTTN-201ENST00000255674 6960 ntTSL 5 BASIC3.32□□□□□ -1.88
HOXA1P49639 FAP-214ENST00000627638 2569 ntAPPRIS ALT1 TSL 5 BASIC3.32□□□□□ -1.88
HOXA1P49639 PIGN-240ENST00000639912 6530 ntTSL 5 BASIC3.31□□□□□ -1.88
HOXA1P49639 TNFAIP8-203ENST00000415806 1990 ntTSL 1 (best) BASIC3.31□□□□□ -1.88
HOXA1P49639 AC011460.1-201ENST00000636268 1834 ntBASIC3.31□□□□□ -1.88
HOXA1P49639 MTCO1P24-201ENST00000515438 1558 ntBASIC3.31□□□□□ -1.88
HOXA1P49639 MYOT-208ENST00000515645 1578 ntTSL 2 BASIC3.31□□□□□ -1.88
HOXA1P49639 LINC00305-201ENST00000323355 873 ntTSL 1 (best) BASIC3.31□□□□□ -1.88
HOXA1P49639 OR8G1-201ENST00000341493 936 ntAPPRIS P1 BASIC3.31□□□□□ -1.88
HOXA1P49639 NAMPT-202ENST00000354289 1213 ntTSL 1 (best) BASIC3.31□□□□□ -1.88
HOXA1P49639 RNU1-14P-201ENST00000362759 152 ntBASIC3.31□□□□□ -1.88
HOXA1P49639 RNU6-1249P-201ENST00000363237 111 ntBASIC3.31□□□□□ -1.88
HOXA1P49639 RNA5-8SP7-201ENST00000363443 155 ntBASIC3.31□□□□□ -1.88
HOXA1P49639 RNU4-1-201ENST00000363925 141 ntBASIC3.31□□□□□ -1.88
HOXA1P49639 Y_RNA.296-201ENST00000364930 108 ntBASIC3.31□□□□□ -1.88
HOXA1P49639 RNU6-356P-201ENST00000384140 107 ntBASIC3.31□□□□□ -1.88
HOXA1P49639 MIR192-201ENST00000384915 110 ntBASIC3.31□□□□□ -1.88
HOXA1P49639 TRBV24-1-201ENST00000390397 381 ntAPPRIS P1 BASIC3.31□□□□□ -1.88
HOXA1P49639 AL583834.1-201ENST00000406943 343 ntBASIC3.31□□□□□ -1.88
HOXA1P49639 LINC00894-201ENST00000413076 403 ntTSL 3 BASIC3.31□□□□□ -1.88
HOXA1P49639 AC016769.2-201ENST00000414815 475 ntBASIC3.31□□□□□ -1.88
HOXA1P49639 RPS15AP12-201ENST00000419498 388 ntBASIC3.31□□□□□ -1.88
HOXA1P49639 AC245028.1-201ENST00000423259 256 ntBASIC3.31□□□□□ -1.88
HOXA1P49639 AL157831.1-201ENST00000426134 473 ntBASIC3.31□□□□□ -1.88
HOXA1P49639 AC006548.1-201ENST00000427470 102 ntBASIC3.31□□□□□ -1.88
HOXA1P49639 AL731563.2-201ENST00000431293 291 ntTSL 5 BASIC3.31□□□□□ -1.88
HOXA1P49639 AC108734.1-201ENST00000439549 399 ntBASIC3.31□□□□□ -1.88
HOXA1P49639 RABEPKP1-201ENST00000440529 1026 ntBASIC3.31□□□□□ -1.88
HOXA1P49639 AL354794.1-201ENST00000442103 516 ntTSL 3 BASIC3.31□□□□□ -1.88
HOXA1P49639 AC025428.1-201ENST00000444137 403 ntTSL 3 BASIC3.31□□□□□ -1.88
HOXA1P49639 SLC16A12-AS1-202ENST00000454270 478 ntTSL 2 BASIC3.31□□□□□ -1.88
HOXA1P49639 AC007967.1-201ENST00000455422 1159 ntBASIC3.31□□□□□ -1.88
HOXA1P49639 AC018742.1-202ENST00000457901 504 ntTSL 3 BASIC3.31□□□□□ -1.88
HOXA1P49639 snoU13.3-201ENST00000459441 104 ntBASIC3.31□□□□□ -1.88
HOXA1P49639 AC108751.4-201ENST00000462931 1001 ntTSL 2 BASIC3.31□□□□□ -1.88
HOXA1P49639 RPS27P29-201ENST00000463110 252 ntBASIC3.31□□□□□ -1.88
HOXA1P49639 RN7SL810P-201ENST00000493031 276 ntBASIC3.31□□□□□ -1.88
HOXA1P49639 LINC01327-201ENST00000498413 535 ntTSL 3 BASIC3.31□□□□□ -1.88
HOXA1P49639 AC023794.1-201ENST00000504210 403 ntTSL 2 BASIC3.31□□□□□ -1.88
HOXA1P49639 AC022483.1-201ENST00000514020 567 ntBASIC3.31□□□□□ -1.88
HOXA1P49639 AC097460.1-201ENST00000514624 590 ntTSL 3 BASIC3.31□□□□□ -1.88
HOXA1P49639 PCAT4-202ENST00000514836 373 ntTSL 3 BASIC3.31□□□□□ -1.88
HOXA1P49639 RN7SKP244-201ENST00000516513 307 ntBASIC3.31□□□□□ -1.88
HOXA1P49639 RNU6-528P-201ENST00000516926 100 ntBASIC3.31□□□□□ -1.88
HOXA1P49639 AC105233.3-201ENST00000531125 744 ntBASIC3.31□□□□□ -1.88
HOXA1P49639 FBXO3-210ENST00000532057 918 ntTSL 2 BASIC3.31□□□□□ -1.88
HOXA1P49639 LINC02286-201ENST00000552425 285 ntTSL 2 BASIC3.31□□□□□ -1.88
HOXA1P49639 AC124947.2-202ENST00000552735 133 ntBASIC3.31□□□□□ -1.88
HOXA1P49639 AL139317.3-202ENST00000555689 528 ntTSL 5 BASIC3.31□□□□□ -1.88
HOXA1P49639 TVP23BP1-201ENST00000557500 617 ntBASIC3.31□□□□□ -1.88
HOXA1P49639 LINC02164-201ENST00000566684 272 ntTSL 3 BASIC3.31□□□□□ -1.88
HOXA1P49639 AL391840.1-201ENST00000571144 367 ntBASIC3.31□□□□□ -1.88
HOXA1P49639 AC022655.2-201ENST00000577280 318 ntBASIC3.31□□□□□ -1.88
HOXA1P49639 AP001094.1-201ENST00000579805 193 ntBASIC3.31□□□□□ -1.88
HOXA1P49639 AC037487.2-201ENST00000581796 537 ntTSL 3 BASIC3.31□□□□□ -1.88
HOXA1P49639 RPL26-207ENST00000583011 524 ntAPPRIS P1 TSL 3 BASIC3.31□□□□□ -1.88
Retrieved 100 of 98,524 protein–RNA pairs in 92.1 ms