Protein–RNA interactions for Protein: P31249

HOXD3, Homeobox protein Hox-D3, humanhuman

Predicted RBP Predictions only

Length 432 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD3P31249 AC125603.1-201ENST00000552718 366 ntTSL 3 BASIC3.45□□□□□ -1.86
HOXD3P31249 AL352955.1-201ENST00000555490 332 ntTSL 3 BASIC3.45□□□□□ -1.86
HOXD3P31249 LINC02301-203ENST00000555798 789 ntTSL 3 BASIC3.45□□□□□ -1.86
HOXD3P31249 AP005121.1-201ENST00000578243 469 ntTSL 3 BASIC3.45□□□□□ -1.86
HOXD3P31249 LINC01909-202ENST00000584919 815 ntTSL 3 BASIC3.45□□□□□ -1.86
HOXD3P31249 AP001029.3-201ENST00000588063 596 ntBASIC3.45□□□□□ -1.86
HOXD3P31249 AC005255.1-201ENST00000593748 216 ntBASIC3.45□□□□□ -1.86
HOXD3P31249 RNA5SP108-201ENST00000605921 117 ntBASIC3.45□□□□□ -1.86
HOXD3P31249 AP000569.1-201ENST00000607953 591 ntTSL 2 BASIC3.45□□□□□ -1.86
HOXD3P31249 AC020634.1-201ENST00000608701 549 ntBASIC3.45□□□□□ -1.86
HOXD3P31249 AL356515.1-201ENST00000611081 415 ntTSL 3 BASIC3.45□□□□□ -1.86
HOXD3P31249 C12orf45-204ENST00000552951 23529 ntAPPRIS P1 TSL 1 (best) BASIC3.45□□□□□ -1.86
HOXD3P31249 DDX4-204ENST00000505374 2884 ntAPPRIS P1 TSL 1 (best) BASIC3.45□□□□□ -1.86
HOXD3P31249 PIKFYVE-201ENST00000264380 9901 ntAPPRIS P1 TSL 1 (best) BASIC3.45□□□□□ -1.86
HOXD3P31249 PPP1R9A-202ENST00000340694 9689 ntAPPRIS P1 TSL 5 BASIC3.44□□□□□ -1.86
HOXD3P31249 FKTN-204ENST00000448551 1700 ntTSL 2 BASIC3.44□□□□□ -1.86
HOXD3P31249 SMG1P1-206ENST00000431681 2913 ntTSL 2 BASIC3.44□□□□□ -1.86
HOXD3P31249 EFHC1-205ENST00000538167 5308 ntTSL 5 BASIC3.44□□□□□ -1.86
HOXD3P31249 BBX-203ENST00000402543 3980 ntTSL 5 BASIC3.44□□□□□ -1.86
HOXD3P31249 RASA1-205ENST00000512763 3060 ntAPPRIS ALT2 TSL 2 BASIC3.44□□□□□ -1.86
HOXD3P31249 C1orf112-203ENST00000413811 2661 ntAPPRIS ALT2 TSL 1 (best) BASIC3.44□□□□□ -1.86
HOXD3P31249 PAPPA-AS1-201ENST00000445861 2450 ntBASIC3.44□□□□□ -1.86
HOXD3P31249 PPIG-207ENST00000448752 2498 ntAPPRIS P1 TSL 1 (best) BASIC3.44□□□□□ -1.86
HOXD3P31249 NXPH1-205ENST00000602349 1953 ntBASIC3.44□□□□□ -1.86
HOXD3P31249 AC027287.1-201ENST00000553115 1453 ntBASIC3.44□□□□□ -1.86
HOXD3P31249 TMEM251-201ENST00000283534 909 ntAPPRIS P1 TSL 1 (best) BASIC3.44□□□□□ -1.86
HOXD3P31249 OR5J2-201ENST00000312298 939 ntAPPRIS P1 BASIC3.44□□□□□ -1.86
HOXD3P31249 XIAPP3-201ENST00000312918 795 ntBASIC3.44□□□□□ -1.86
HOXD3P31249 RPL7P26-201ENST00000333817 754 ntBASIC3.44□□□□□ -1.86
HOXD3P31249 Y_RNA.86-201ENST00000363020 111 ntBASIC3.44□□□□□ -1.86
HOXD3P31249 MIR23B-201ENST00000384832 97 ntBASIC3.44□□□□□ -1.86
HOXD3P31249 TRAV24-201ENST00000390453 343 ntAPPRIS P1 BASIC3.44□□□□□ -1.86
HOXD3P31249 SNORA48.7-201ENST00000391302 135 ntBASIC3.44□□□□□ -1.86
HOXD3P31249 RNU2-62P-201ENST00000410868 191 ntBASIC3.44□□□□□ -1.86
HOXD3P31249 AC005162.2-201ENST00000411479 578 ntTSL 4 BASIC3.44□□□□□ -1.86
HOXD3P31249 LINC01037-201ENST00000427337 424 ntTSL 5 BASIC3.44□□□□□ -1.86
HOXD3P31249 AL590302.1-201ENST00000431017 359 ntTSL 2 BASIC3.44□□□□□ -1.86
HOXD3P31249 ELOCP18-201ENST00000434209 337 ntBASIC3.44□□□□□ -1.86
HOXD3P31249 RPS20P5-201ENST00000434808 360 ntBASIC3.44□□□□□ -1.86
HOXD3P31249 USP9YP7-201ENST00000436723 430 ntBASIC3.44□□□□□ -1.86
HOXD3P31249 AC097347.1-201ENST00000438499 517 ntTSL 3 BASIC3.44□□□□□ -1.86
HOXD3P31249 AC098614.3-201ENST00000438957 440 ntBASIC3.44□□□□□ -1.86
HOXD3P31249 AC007879.4-201ENST00000440545 361 ntTSL 3 BASIC3.44□□□□□ -1.86
HOXD3P31249 AC073342.1-202ENST00000446192 457 ntTSL 5 BASIC3.44□□□□□ -1.86
HOXD3P31249 AC010655.1-201ENST00000449336 292 ntBASIC3.44□□□□□ -1.86
HOXD3P31249 AC140076.1-201ENST00000449897 361 ntBASIC3.44□□□□□ -1.86
HOXD3P31249 SPIN4-AS1-201ENST00000451979 426 ntTSL 2 BASIC3.44□□□□□ -1.86
HOXD3P31249 USP9YP32-201ENST00000452432 430 ntBASIC3.44□□□□□ -1.86
HOXD3P31249 AC005062.1-201ENST00000457921 566 ntTSL 3 BASIC3.44□□□□□ -1.86
HOXD3P31249 RNU6-261P-201ENST00000459506 102 ntBASIC3.44□□□□□ -1.86
HOXD3P31249 RPS27AP17-201ENST00000463344 455 ntBASIC3.44□□□□□ -1.86
HOXD3P31249 AC079943.1-201ENST00000491909 466 ntTSL 3 BASIC3.44□□□□□ -1.86
HOXD3P31249 ALDH7A1P3-201ENST00000492517 345 ntBASIC3.44□□□□□ -1.86
HOXD3P31249 RN7SL810P-201ENST00000493031 276 ntBASIC3.44□□□□□ -1.86
HOXD3P31249 ATP6V1G1P6-201ENST00000504007 334 ntBASIC3.44□□□□□ -1.86
HOXD3P31249 HSPD1P15-201ENST00000505573 1122 ntBASIC3.44□□□□□ -1.86
HOXD3P31249 TMEM248P1-201ENST00000510579 951 ntBASIC3.44□□□□□ -1.86
HOXD3P31249 AC005699.1-205ENST00000510639 427 ntTSL 2 BASIC3.44□□□□□ -1.86
HOXD3P31249 SNORA40.12-201ENST00000516329 111 ntBASIC3.44□□□□□ -1.86
HOXD3P31249 RNU6-410P-201ENST00000517006 107 ntBASIC3.44□□□□□ -1.86
HOXD3P31249 RNU6-64P-201ENST00000517119 105 ntBASIC3.44□□□□□ -1.86
HOXD3P31249 MIR2116-201ENST00000517221 80 ntBASIC3.44□□□□□ -1.86
HOXD3P31249 AC068672.1-201ENST00000520391 328 ntTSL 3 BASIC3.44□□□□□ -1.86
HOXD3P31249 CENPUP1-201ENST00000526649 1202 ntBASIC3.44□□□□□ -1.86
HOXD3P31249 OR5B19P-201ENST00000531766 928 ntBASIC3.44□□□□□ -1.86
HOXD3P31249 AC092745.2-201ENST00000537764 620 ntTSL 3 BASIC3.44□□□□□ -1.86
HOXD3P31249 SPTY2D1-AS1-203ENST00000542172 331 ntAPPRIS ALT2 TSL 1 (best) BASIC3.44□□□□□ -1.86
HOXD3P31249 RAB11AP2-201ENST00000545905 639 ntBASIC3.44□□□□□ -1.86
HOXD3P31249 LINC01405-202ENST00000547607 674 ntTSL 3 BASIC3.44□□□□□ -1.86
HOXD3P31249 AC128657.1-201ENST00000549459 145 ntBASIC3.44□□□□□ -1.86
HOXD3P31249 AC069437.1-201ENST00000551372 512 ntTSL 4 BASIC3.44□□□□□ -1.86
HOXD3P31249 CBX3P5-201ENST00000552017 521 ntBASIC3.44□□□□□ -1.86
HOXD3P31249 TMEM106C-220ENST00000552561 810 ntAPPRIS P1 TSL 1 (best) BASIC3.44□□□□□ -1.86
HOXD3P31249 LINC01584-202ENST00000563990 852 ntTSL 3 BASIC3.44□□□□□ -1.86
HOXD3P31249 AC106785.1-201ENST00000565935 262 ntBASIC3.44□□□□□ -1.86
HOXD3P31249 LINC01290-201ENST00000566787 502 ntTSL 2 BASIC3.44□□□□□ -1.86
HOXD3P31249 HMGB1P6-201ENST00000569046 646 ntBASIC3.44□□□□□ -1.86
HOXD3P31249 AC090403.1-205ENST00000580883 516 ntTSL 2 BASIC3.44□□□□□ -1.86
HOXD3P31249 AP001429.1-201ENST00000602568 530 ntBASIC3.44□□□□□ -1.86
HOXD3P31249 AL355812.1-201ENST00000603215 216 ntBASIC3.44□□□□□ -1.86
HOXD3P31249 AC112230.1-201ENST00000604342 547 ntBASIC3.44□□□□□ -1.86
HOXD3P31249 AC004908.2-201ENST00000609090 574 ntBASIC3.44□□□□□ -1.86
HOXD3P31249 AC098617.1-203ENST00000609865 277 ntTSL 5 BASIC3.44□□□□□ -1.86
HOXD3P31249 AC091905.2-201ENST00000623143 306 ntBASIC3.44□□□□□ -1.86
HOXD3P31249 PCBP1-AS1-348ENST00000629506 667 ntTSL 5 BASIC3.44□□□□□ -1.86
HOXD3P31249 NCK1-204ENST00000469404 2403 ntTSL 2 BASIC3.44□□□□□ -1.86
HOXD3P31249 U2SURP-214ENST00000493598 3491 ntTSL 5 BASIC3.44□□□□□ -1.86
HOXD3P31249 AL672167.1-203ENST00000641299 2975 ntBASIC3.44□□□□□ -1.86
HOXD3P31249 DTNA-203ENST00000315456 1706 ntTSL 1 (best) BASIC3.44□□□□□ -1.86
HOXD3P31249 SOS1-202ENST00000402219 8314 ntAPPRIS P2 TSL 1 (best) BASIC3.44□□□□□ -1.86
HOXD3P31249 SEC31A-237ENST00000513858 3687 ntTSL 1 (best) BASIC3.43□□□□□ -1.86
HOXD3P31249 CNGB3-201ENST00000320005 4347 ntAPPRIS P1 TSL 1 (best) BASIC3.43□□□□□ -1.86
HOXD3P31249 SYTL2-213ENST00000525702 2727 ntTSL 1 (best) BASIC3.43□□□□□ -1.86
HOXD3P31249 UTRN-204ENST00000367545 12339 ntAPPRIS P1 TSL 5 BASIC3.43□□□□□ -1.86
HOXD3P31249 RNF38-201ENST00000259605 5012 ntTSL 1 (best) BASIC3.43□□□□□ -1.86
HOXD3P31249 ACE2-202ENST00000427411 3507 ntAPPRIS P1 TSL 1 (best) BASIC3.43□□□□□ -1.86
HOXD3P31249 SPAG17-201ENST00000336338 6924 ntAPPRIS P2 TSL 1 (best) BASIC3.43□□□□□ -1.86
HOXD3P31249 LINC00158-201ENST00000332587 1476 ntTSL 1 (best) BASIC3.43□□□□□ -1.86
HOXD3P31249 AKAP11-201ENST00000025301 9920 ntAPPRIS P1 TSL 1 (best) BASIC3.43□□□□□ -1.86
HOXD3P31249 RANBP6-201ENST00000259569 4576 ntAPPRIS P1 BASIC3.43□□□□□ -1.86
Retrieved 100 of 98,524 protein–RNA pairs in 133.8 ms