Protein–RNA interactions for Protein: O75112

LDB3, LIM domain-binding protein 3, humanhuman

Predictions only

Length 727 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LDB3O75112 RNF38-210ENST00000611646 5185 ntTSL 5 BASIC3.61□□□□□ -1.83
LDB3O75112 SLC30A6-204ENST00000406369 4589 ntTSL 1 (best) BASIC3.61□□□□□ -1.83
LDB3O75112 KC6-201ENST00000592302 1713 ntTSL 1 (best) BASIC3.61□□□□□ -1.83
LDB3O75112 TRAPPC13-208ENST00000505553 1410 ntAPPRIS ALT1 TSL 1 (best) BASIC3.61□□□□□ -1.83
LDB3O75112 LINC00648-202ENST00000555985 2885 ntTSL 2 BASIC3.61□□□□□ -1.83
LDB3O75112 MACC1-201ENST00000332878 2994 ntAPPRIS P1 TSL 1 (best) BASIC3.6□□□□□ -1.83
LDB3O75112 MIR181A1HG-203ENST00000436880 2308 ntTSL 1 (best) BASIC3.6□□□□□ -1.83
LDB3O75112 AC084357.3-201ENST00000541353 2751 ntTSL 5 BASIC3.6□□□□□ -1.83
LDB3O75112 KCNU1-201ENST00000399881 3695 ntAPPRIS P1 TSL 2 BASIC3.6□□□□□ -1.83
LDB3O75112 RANBP6-201ENST00000259569 4576 ntAPPRIS P1 BASIC3.6□□□□□ -1.83
LDB3O75112 XKR3-201ENST00000331428 1690 ntAPPRIS P1 TSL 1 (best) BASIC3.6□□□□□ -1.83
LDB3O75112 SPAG11A-202ENST00000326625 445 ntTSL 5 BASIC3.6□□□□□ -1.83
LDB3O75112 MT-ND3-201ENST00000361227 346 ntAPPRIS P1 BASIC3.6□□□□□ -1.83
LDB3O75112 RNU6-28P-201ENST00000362378 107 ntBASIC3.6□□□□□ -1.83
LDB3O75112 CIR1P3-201ENST00000405137 479 ntBASIC3.6□□□□□ -1.83
LDB3O75112 AL590002.1-201ENST00000406554 418 ntBASIC3.6□□□□□ -1.83
LDB3O75112 Y_RNA.598-201ENST00000410480 95 ntBASIC3.6□□□□□ -1.83
LDB3O75112 MTCO1P17-201ENST00000411522 491 ntBASIC3.6□□□□□ -1.83
LDB3O75112 RPS3AP3-201ENST00000411933 242 ntBASIC3.6□□□□□ -1.83
LDB3O75112 AC009237.5-201ENST00000414271 501 ntBASIC3.6□□□□□ -1.83
LDB3O75112 AC138393.2-201ENST00000414742 246 ntBASIC3.6□□□□□ -1.83
LDB3O75112 AC008154.2-201ENST00000420268 414 ntTSL 3 BASIC3.6□□□□□ -1.83
LDB3O75112 AL589765.2-201ENST00000420382 424 ntTSL 3 BASIC3.6□□□□□ -1.83
LDB3O75112 AL445123.1-201ENST00000422023 446 ntTSL 2 BASIC3.6□□□□□ -1.83
LDB3O75112 AC013402.2-201ENST00000424257 437 ntTSL 3 BASIC3.6□□□□□ -1.83
LDB3O75112 AC233728.2-201ENST00000425348 757 ntBASIC3.6□□□□□ -1.83
LDB3O75112 ZNF863P-201ENST00000426746 417 ntBASIC3.6□□□□□ -1.83
LDB3O75112 PSMA6P3-201ENST00000428242 164 ntBASIC3.6□□□□□ -1.83
LDB3O75112 AL590233.1-201ENST00000430017 456 ntBASIC3.6□□□□□ -1.83
LDB3O75112 FTH1P6-201ENST00000430768 320 ntBASIC3.6□□□□□ -1.83
LDB3O75112 AC109583.1-201ENST00000432156 268 ntBASIC3.6□□□□□ -1.83
LDB3O75112 AL139118.1-201ENST00000432707 446 ntTSL 3 BASIC3.6□□□□□ -1.83
LDB3O75112 ATP5HP2-201ENST00000433885 485 ntBASIC3.6□□□□□ -1.83
LDB3O75112 AC005019.2-201ENST00000434321 359 ntTSL 5 BASIC3.6□□□□□ -1.83
LDB3O75112 MTND4LP10-201ENST00000435146 291 ntBASIC3.6□□□□□ -1.83
LDB3O75112 LINC01423-202ENST00000436845 423 ntTSL 2 BASIC3.6□□□□□ -1.83
LDB3O75112 AF228730.2-201ENST00000438784 848 ntBASIC3.6□□□□□ -1.83
LDB3O75112 AL356535.1-201ENST00000440335 398 ntBASIC3.6□□□□□ -1.83
LDB3O75112 FAR2P1-203ENST00000440931 187 ntTSL 2 BASIC3.6□□□□□ -1.83
LDB3O75112 LINC00529-201ENST00000443854 241 ntTSL 2 BASIC3.6□□□□□ -1.83
LDB3O75112 UTAT33-202ENST00000449177 565 ntTSL 2 BASIC3.6□□□□□ -1.83
LDB3O75112 GAPDHP17-201ENST00000449858 1001 ntBASIC3.6□□□□□ -1.83
LDB3O75112 AL590365.1-201ENST00000450788 243 ntBASIC3.6□□□□□ -1.83
LDB3O75112 MTND2P24-201ENST00000453434 806 ntBASIC3.6□□□□□ -1.83
LDB3O75112 HMGB1P15-201ENST00000453854 435 ntBASIC3.6□□□□□ -1.83
LDB3O75112 RN7SL132P-201ENST00000478131 296 ntBASIC3.6□□□□□ -1.83
LDB3O75112 RPS3AP14-201ENST00000483907 780 ntBASIC3.6□□□□□ -1.83
LDB3O75112 AC069499.1-201ENST00000489433 509 ntBASIC3.6□□□□□ -1.83
LDB3O75112 AC078817.1-201ENST00000492623 435 ntBASIC3.6□□□□□ -1.83
LDB3O75112 AC022272.1-201ENST00000503478 777 ntTSL 2 BASIC3.6□□□□□ -1.83
LDB3O75112 AC090673.1-204ENST00000504038 977 ntTSL 1 (best) BASIC3.6□□□□□ -1.83
LDB3O75112 AC034234.1-202ENST00000508696 339 ntTSL 3 BASIC3.6□□□□□ -1.83
LDB3O75112 CTD-2350J17.1-202ENST00000510456 360 ntTSL 2 BASIC3.6□□□□□ -1.83
LDB3O75112 AC097467.1-201ENST00000513660 370 ntTSL 5 BASIC3.6□□□□□ -1.83
LDB3O75112 SCARNA14-201ENST00000516903 136 ntBASIC3.6□□□□□ -1.83
LDB3O75112 RNU6-528P-201ENST00000516926 100 ntBASIC3.6□□□□□ -1.83
LDB3O75112 AP005357.1-201ENST00000520749 476 ntTSL 3 BASIC3.6□□□□□ -1.83
LDB3O75112 AF279873.4-202ENST00000521714 511 ntTSL 2 BASIC3.6□□□□□ -1.83
LDB3O75112 AC103796.1-201ENST00000530663 358 ntTSL 1 (best) BASIC3.6□□□□□ -1.83
LDB3O75112 AP003122.4-201ENST00000530980 758 ntBASIC3.6□□□□□ -1.83
LDB3O75112 AP003385.6-201ENST00000531603 374 ntBASIC3.6□□□□□ -1.83
LDB3O75112 MAL2-203ENST00000534619 578 ntTSL 4 BASIC3.6□□□□□ -1.83
LDB3O75112 AC004943.1-202ENST00000558618 503 ntTSL 3 BASIC3.6□□□□□ -1.83
LDB3O75112 AC044798.1-201ENST00000565146 418 ntTSL 5 BASIC3.6□□□□□ -1.83
LDB3O75112 AC107954.1-201ENST00000565906 727 ntBASIC3.6□□□□□ -1.83
LDB3O75112 AC090616.5-202ENST00000582111 297 ntBASIC3.6□□□□□ -1.83
LDB3O75112 AL353997.4-201ENST00000586196 166 ntBASIC3.6□□□□□ -1.83
LDB3O75112 AL355812.1-201ENST00000603215 216 ntBASIC3.6□□□□□ -1.83
LDB3O75112 AC112191.3-201ENST00000604371 277 ntBASIC3.6□□□□□ -1.83
LDB3O75112 IGHV3-29-201ENST00000604817 344 ntBASIC3.6□□□□□ -1.83
LDB3O75112 AL390208.1-201ENST00000605885 644 ntBASIC3.6□□□□□ -1.83
LDB3O75112 AL138686.1-201ENST00000612699 315 ntTSL 3 BASIC3.6□□□□□ -1.83
LDB3O75112 AC025253.1-201ENST00000613623 543 ntBASIC3.6□□□□□ -1.83
LDB3O75112 AC097478.4-201ENST00000615968 522 ntTSL 5 BASIC3.6□□□□□ -1.83
LDB3O75112 AC136475.10-201ENST00000620253 385 ntBASIC3.6□□□□□ -1.83
LDB3O75112 PTAR1-202ENST00000377200 9876 ntTSL 1 (best) BASIC3.6□□□□□ -1.83
LDB3O75112 FAM169A-201ENST00000389156 5990 ntAPPRIS P1 TSL 1 (best) BASIC3.6□□□□□ -1.83
LDB3O75112 LRRC49-222ENST00000560158 1898 ntTSL 5 BASIC3.6□□□□□ -1.83
LDB3O75112 DOCK7-201ENST00000251157 7084 ntAPPRIS ALT2 TSL 5 BASIC3.6□□□□□ -1.83
LDB3O75112 AGTR2-201ENST00000371906 2882 ntAPPRIS P1 TSL 1 (best) BASIC3.6□□□□□ -1.83
LDB3O75112 PIGN-210ENST00000588571 1960 ntTSL 5 BASIC3.6□□□□□ -1.83
LDB3O75112 MGAT4A-204ENST00000414521 3709 ntTSL 2 BASIC3.59□□□□□ -1.83
LDB3O75112 CFHR4-204ENST00000608469 1601 ntTSL 1 (best) BASIC3.59□□□□□ -1.83
LDB3O75112 CDKL3-209ENST00000523054 1775 ntTSL 2 BASIC3.59□□□□□ -1.83
LDB3O75112 WNK3-202ENST00000375159 5403 ntAPPRIS P3 TSL 1 (best) BASIC3.59□□□□□ -1.83
LDB3O75112 KNTC1-201ENST00000333479 6975 ntAPPRIS P1 TSL 1 (best) BASIC3.59□□□□□ -1.83
LDB3O75112 MBNL1-211ENST00000463374 5092 ntAPPRIS P4 TSL 1 (best) BASIC3.59□□□□□ -1.83
LDB3O75112 SPINK1-201ENST00000296695 542 ntAPPRIS P1 TSL 1 (best) BASIC3.59□□□□□ -1.83
LDB3O75112 HSFY1-202ENST00000309834 1038 ntAPPRIS ALT2 TSL 1 (best) BASIC3.59□□□□□ -1.83
LDB3O75112 EDDM3A-201ENST00000326842 927 ntAPPRIS P1 TSL 1 (best) BASIC3.59□□□□□ -1.83
LDB3O75112 HSFY2-202ENST00000344884 1038 ntAPPRIS ALT2 TSL 1 (best) BASIC3.59□□□□□ -1.83
LDB3O75112 AL161781.1-201ENST00000354277 403 ntBASIC3.59□□□□□ -1.83
LDB3O75112 Y_RNA.813-201ENST00000364639 102 ntBASIC3.59□□□□□ -1.83
LDB3O75112 U1.1-201ENST00000384101 164 ntBASIC3.59□□□□□ -1.83
LDB3O75112 SNORA3.3-201ENST00000408712 125 ntBASIC3.59□□□□□ -1.83
LDB3O75112 RNA5SP56-201ENST00000410277 118 ntBASIC3.59□□□□□ -1.83
LDB3O75112 AC079150.1-201ENST00000413043 383 ntTSL 3 BASIC3.59□□□□□ -1.83
LDB3O75112 PSMA4-202ENST00000413382 1019 ntTSL 1 (best) BASIC3.59□□□□□ -1.83
LDB3O75112 BX295541.1-201ENST00000417774 250 ntBASIC3.59□□□□□ -1.83
LDB3O75112 C1DP2-201ENST00000418167 426 ntBASIC3.59□□□□□ -1.83
Retrieved 100 of 98,524 protein–RNA pairs in 102.9 ms