Protein–RNA interactions for Protein: O60663

LMX1B, LIM homeobox transcription factor 1-beta, humanhuman

Predictions only

Length 402 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1BO60663 AC107016.1-201ENST00000550463 337 ntBASIC3.41□□□□□ -1.86
LMX1BO60663 AC026116.1-201ENST00000551729 474 ntTSL 3 BASIC3.41□□□□□ -1.86
LMX1BO60663 AC025030.2-201ENST00000552558 567 ntTSL 2 BASIC3.41□□□□□ -1.86
LMX1BO60663 AL445363.2-202ENST00000555361 435 ntTSL 3 BASIC3.41□□□□□ -1.86
LMX1BO60663 AL352984.1-201ENST00000556949 276 ntTSL 3 BASIC3.41□□□□□ -1.86
LMX1BO60663 AL391840.1-201ENST00000571144 367 ntBASIC3.41□□□□□ -1.86
LMX1BO60663 AC015845.1-201ENST00000579285 335 ntTSL 3 BASIC3.41□□□□□ -1.86
LMX1BO60663 MSMB-201ENST00000581478 386 ntTSL 1 (best) BASIC3.41□□□□□ -1.86
LMX1BO60663 AC006504.3-201ENST00000586818 523 ntBASIC3.41□□□□□ -1.86
LMX1BO60663 GALP-203ENST00000590002 150 ntTSL 1 (best) BASIC3.41□□□□□ -1.86
LMX1BO60663 CKS1BP3-201ENST00000600888 237 ntBASIC3.41□□□□□ -1.86
LMX1BO60663 AL365503.1-201ENST00000605247 905 ntBASIC3.41□□□□□ -1.86
LMX1BO60663 LARP7P1-201ENST00000605576 316 ntBASIC3.41□□□□□ -1.86
LMX1BO60663 SNORA51-201ENST00000606420 132 ntBASIC3.41□□□□□ -1.86
LMX1BO60663 AC092636.1-201ENST00000608609 415 ntTSL 2 BASIC3.41□□□□□ -1.86
LMX1BO60663 LINC00649-214ENST00000609132 668 ntTSL 5 BASIC3.41□□□□□ -1.86
LMX1BO60663 AC098617.1-203ENST00000609865 277 ntTSL 5 BASIC3.41□□□□□ -1.86
LMX1BO60663 AC006338.1-201ENST00000618453 749 ntBASIC3.41□□□□□ -1.86
LMX1BO60663 AL354798.1-201ENST00000622505 329 ntBASIC3.41□□□□□ -1.86
LMX1BO60663 C7orf66-201ENST00000624695 435 ntTSL 2 BASIC3.41□□□□□ -1.86
LMX1BO60663 AL158835.3-201ENST00000625908 565 ntTSL 5 BASIC3.41□□□□□ -1.86
LMX1BO60663 AC012442.3-202ENST00000636742 206 ntBASIC3.41□□□□□ -1.86
LMX1BO60663 ABBA01000935.2-201ENST00000637477 838 ntBASIC3.41□□□□□ -1.86
LMX1BO60663 AL161912.2-201ENST00000565707 3007 ntBASIC3.41□□□□□ -1.86
LMX1BO60663 ZNF345-214ENST00000612719 2938 ntAPPRIS P1 TSL 4 BASIC3.41□□□□□ -1.86
LMX1BO60663 DNAJC10-201ENST00000264065 20129 ntAPPRIS P1 TSL 1 (best) BASIC3.41□□□□□ -1.86
LMX1BO60663 LINC01828-203ENST00000452716 3250 ntTSL 5 BASIC3.41□□□□□ -1.86
LMX1BO60663 FAM126A-204ENST00000432176 13177 ntAPPRIS P1 TSL 1 (best) BASIC3.41□□□□□ -1.86
LMX1BO60663 THUMPD3P1-201ENST00000506556 1480 ntBASIC3.41□□□□□ -1.86
LMX1BO60663 WDR72-201ENST00000360509 5887 ntAPPRIS P2 TSL 1 (best) BASIC3.41□□□□□ -1.86
LMX1BO60663 C1orf112-203ENST00000413811 2661 ntAPPRIS ALT2 TSL 1 (best) BASIC3.4□□□□□ -1.86
LMX1BO60663 TTC21B-AS1-201ENST00000440322 2260 ntTSL 4 BASIC3.4□□□□□ -1.86
LMX1BO60663 ADAM29-211ENST00000514159 3010 ntAPPRIS P1 TSL 4 BASIC3.4□□□□□ -1.86
LMX1BO60663 SMC1B-201ENST00000357450 4201 ntAPPRIS P1 TSL 5 BASIC3.4□□□□□ -1.86
LMX1BO60663 OR1E2-201ENST00000248384 972 ntAPPRIS P1 BASIC3.4□□□□□ -1.87
LMX1BO60663 SNORA63.1-201ENST00000362493 131 ntBASIC3.4□□□□□ -1.87
LMX1BO60663 RNU6-1243P-201ENST00000364028 107 ntBASIC3.4□□□□□ -1.87
LMX1BO60663 RNU6-1090P-201ENST00000364065 94 ntBASIC3.4□□□□□ -1.87
LMX1BO60663 RNU6-744P-201ENST00000365557 107 ntBASIC3.4□□□□□ -1.87
LMX1BO60663 RNU6-1316P-201ENST00000384242 108 ntBASIC3.4□□□□□ -1.87
LMX1BO60663 RNU6-146P-201ENST00000384602 108 ntBASIC3.4□□□□□ -1.87
LMX1BO60663 TRAV40-201ENST00000390467 317 ntAPPRIS P1 BASIC3.4□□□□□ -1.87
LMX1BO60663 AL031679.1-201ENST00000400616 525 ntBASIC3.4□□□□□ -1.87
LMX1BO60663 AL590002.1-201ENST00000406554 418 ntBASIC3.4□□□□□ -1.87
LMX1BO60663 RNU6-603P-201ENST00000411403 107 ntBASIC3.4□□□□□ -1.87
LMX1BO60663 MTCO1P17-201ENST00000411522 491 ntBASIC3.4□□□□□ -1.87
LMX1BO60663 AC078974.1-201ENST00000411597 223 ntBASIC3.4□□□□□ -1.87
LMX1BO60663 AC079150.1-201ENST00000413043 383 ntTSL 3 BASIC3.4□□□□□ -1.87
LMX1BO60663 PSMA4-202ENST00000413382 1019 ntTSL 1 (best) BASIC3.4□□□□□ -1.87
LMX1BO60663 RPL7AP73-201ENST00000413490 353 ntBASIC3.4□□□□□ -1.87
LMX1BO60663 RAC1P3-201ENST00000416129 580 ntBASIC3.4□□□□□ -1.87
LMX1BO60663 MTATP6P27-201ENST00000416987 621 ntBASIC3.4□□□□□ -1.87
LMX1BO60663 CCDC58P2-201ENST00000417131 366 ntBASIC3.4□□□□□ -1.87
LMX1BO60663 F10-AS1-201ENST00000424635 417 ntTSL 5 BASIC3.4□□□□□ -1.87
LMX1BO60663 AC096632.1-201ENST00000427395 310 ntBASIC3.4□□□□□ -1.87
LMX1BO60663 AC093019.2-201ENST00000432294 384 ntTSL 3 BASIC3.4□□□□□ -1.87
LMX1BO60663 AL139118.1-201ENST00000432707 446 ntTSL 3 BASIC3.4□□□□□ -1.87
LMX1BO60663 MTATP6P30-201ENST00000443540 664 ntBASIC3.4□□□□□ -1.87
LMX1BO60663 FAM103A2P-201ENST00000444122 354 ntBASIC3.4□□□□□ -1.87
LMX1BO60663 IQCG-204ENST00000453254 1230 ntTSL 2 BASIC3.4□□□□□ -1.87
LMX1BO60663 snoU13.7-201ENST00000459220 104 ntBASIC3.4□□□□□ -1.87
LMX1BO60663 AC023598.1-201ENST00000472521 361 ntBASIC3.4□□□□□ -1.87
LMX1BO60663 AC145146.2-202ENST00000508118 326 ntTSL 3 BASIC3.4□□□□□ -1.87
LMX1BO60663 AC087241.1-201ENST00000508615 429 ntTSL 5 BASIC3.4□□□□□ -1.87
LMX1BO60663 RNA5SP179-201ENST00000517284 121 ntBASIC3.4□□□□□ -1.87
LMX1BO60663 AC027801.4-201ENST00000518420 395 ntTSL 5 BASIC3.4□□□□□ -1.87
LMX1BO60663 TRIQK-209ENST00000519969 555 ntAPPRIS P1 TSL 4 BASIC3.4□□□□□ -1.87
LMX1BO60663 DEFB109D-201ENST00000529497 240 ntBASIC3.4□□□□□ -1.87
LMX1BO60663 AP000462.2-203ENST00000540545 715 ntTSL 5 BASIC3.4□□□□□ -1.87
LMX1BO60663 LINC01479-201ENST00000545520 509 ntTSL 2 BASIC3.4□□□□□ -1.87
LMX1BO60663 ADI1P3-201ENST00000549509 470 ntBASIC3.4□□□□□ -1.87
LMX1BO60663 LSM6P2-201ENST00000552208 177 ntBASIC3.4□□□□□ -1.87
LMX1BO60663 AL358335.2-201ENST00000555693 487 ntTSL 3 BASIC3.4□□□□□ -1.87
LMX1BO60663 AL583810.3-201ENST00000555713 584 ntTSL 4 BASIC3.4□□□□□ -1.87
LMX1BO60663 AC009101.1-201ENST00000568135 242 ntBASIC3.4□□□□□ -1.87
LMX1BO60663 AC243829.5-201ENST00000578447 247 ntTSL 5 BASIC3.4□□□□□ -1.87
LMX1BO60663 AC079070.1-201ENST00000578740 555 ntTSL 2 BASIC3.4□□□□□ -1.87
LMX1BO60663 LINC02079-201ENST00000582518 294 ntTSL 2 BASIC3.4□□□□□ -1.87
LMX1BO60663 AC026620.1-201ENST00000584815 326 ntTSL 3 BASIC3.4□□□□□ -1.87
LMX1BO60663 ZNF573-209ENST00000585724 453 ntTSL 5 BASIC3.4□□□□□ -1.87
LMX1BO60663 TPMTP1-201ENST00000592307 737 ntBASIC3.4□□□□□ -1.87
LMX1BO60663 ZNF432-203ENST00000597273 624 ntTSL 2 BASIC3.4□□□□□ -1.87
LMX1BO60663 DUXAP4-201ENST00000603046 613 ntBASIC3.4□□□□□ -1.87
LMX1BO60663 AL391646.1-201ENST00000603860 190 ntBASIC3.4□□□□□ -1.87
LMX1BO60663 AC091167.4-201ENST00000605079 184 ntBASIC3.4□□□□□ -1.87
LMX1BO60663 AL592436.1-201ENST00000605135 558 ntBASIC3.4□□□□□ -1.87
LMX1BO60663 AL390208.1-201ENST00000605885 644 ntBASIC3.4□□□□□ -1.87
LMX1BO60663 RNF219-AS1-205ENST00000605996 792 ntTSL 5 BASIC3.4□□□□□ -1.87
LMX1BO60663 AC069200.1-201ENST00000609511 323 ntBASIC3.4□□□□□ -1.87
LMX1BO60663 RNF38-210ENST00000611646 5185 ntTSL 5 BASIC3.4□□□□□ -1.87
LMX1BO60663 AC002553.4-201ENST00000616896 331 ntBASIC3.4□□□□□ -1.87
LMX1BO60663 AC068722.2-201ENST00000618734 544 ntBASIC3.4□□□□□ -1.87
LMX1BO60663 AL354696.2-202ENST00000620300 613 ntTSL 2 BASIC3.4□□□□□ -1.87
LMX1BO60663 AC135584.1-201ENST00000624438 333 ntTSL 5 BASIC3.4□□□□□ -1.87
LMX1BO60663 AL049780.3-201ENST00000624612 1583 ntBASIC3.4□□□□□ -1.87
LMX1BO60663 AC110994.2-201ENST00000635481 492 ntBASIC3.4□□□□□ -1.87
LMX1BO60663 AKAP6-201ENST00000280979 15006 ntAPPRIS P1 TSL 1 (best) BASIC3.4□□□□□ -1.87
LMX1BO60663 EVI5-201ENST00000370331 7403 ntAPPRIS P3 TSL 1 (best) BASIC3.4□□□□□ -1.87
LMX1BO60663 NUP35-203ENST00000409798 1470 ntTSL 2 BASIC3.4□□□□□ -1.87
LMX1BO60663 GABRG2-213ENST00000639046 3058 ntTSL 5 BASIC3.4□□□□□ -1.87
Retrieved 100 of 98,524 protein–RNA pairs in 117 ms