Protein–RNA interactions for Protein: Q9P1Q0

VPS54, Vacuolar protein sorting-associated protein 54, humanhuman

Predictions only

Length 977 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54Q9P1Q0 RAPGEF6-202ENST00000308008 4176 ntTSL 1 (best) BASIC3.33□□□□□ -1.88
VPS54Q9P1Q0 LPP-221ENST00000618621 18277 ntTSL 1 (best) BASIC3.33□□□□□ -1.88
VPS54Q9P1Q0 LPP-222ENST00000640853 18277 ntAPPRIS P1 TSL 1 (best) BASIC3.33□□□□□ -1.88
VPS54Q9P1Q0 RNU6-1074P-201ENST00000383995 104 ntBASIC3.33□□□□□ -1.88
VPS54Q9P1Q0 RNU6-878P-201ENST00000384578 110 ntBASIC3.33□□□□□ -1.88
VPS54Q9P1Q0 RNU6-584P-201ENST00000410350 95 ntBASIC3.33□□□□□ -1.88
VPS54Q9P1Q0 AC004946.1-201ENST00000421825 751 ntTSL 3 BASIC3.33□□□□□ -1.88
VPS54Q9P1Q0 TRIAP1P1-201ENST00000427062 225 ntBASIC3.33□□□□□ -1.88
VPS54Q9P1Q0 AL078601.2-201ENST00000429444 474 ntTSL 2 BASIC3.33□□□□□ -1.88
VPS54Q9P1Q0 AL139132.1-201ENST00000431587 344 ntBASIC3.33□□□□□ -1.88
VPS54Q9P1Q0 ATP5F1P1-201ENST00000433775 569 ntBASIC3.33□□□□□ -1.88
VPS54Q9P1Q0 MTND4LP10-201ENST00000435146 291 ntBASIC3.33□□□□□ -1.88
VPS54Q9P1Q0 AL645638.1-201ENST00000440519 361 ntBASIC3.33□□□□□ -1.88
VPS54Q9P1Q0 LINC01986-201ENST00000440867 590 ntTSL 5 BASIC3.33□□□□□ -1.88
VPS54Q9P1Q0 DIAPH2-AS1-202ENST00000445414 606 ntTSL 2 BASIC3.33□□□□□ -1.88
VPS54Q9P1Q0 MTND2P19-201ENST00000449129 1012 ntBASIC3.33□□□□□ -1.88
VPS54Q9P1Q0 AC007557.1-201ENST00000451711 541 ntTSL 2 BASIC3.33□□□□□ -1.88
VPS54Q9P1Q0 TRGVB-201ENST00000453257 471 ntBASIC3.33□□□□□ -1.88
VPS54Q9P1Q0 AL583803.1-201ENST00000454262 334 ntTSL 3 BASIC3.33□□□□□ -1.88
VPS54Q9P1Q0 AC104308.1-201ENST00000454621 333 ntBASIC3.33□□□□□ -1.88
VPS54Q9P1Q0 OFD1P7Y-201ENST00000454643 1155 ntBASIC3.33□□□□□ -1.88
VPS54Q9P1Q0 RPS15AP17-201ENST00000470598 390 ntBASIC3.33□□□□□ -1.88
VPS54Q9P1Q0 AC092185.1-201ENST00000491371 97 ntBASIC3.33□□□□□ -1.88
VPS54Q9P1Q0 AC080014.1-201ENST00000496877 1201 ntBASIC3.33□□□□□ -1.88
VPS54Q9P1Q0 AC096751.1-202ENST00000502691 1067 ntBASIC3.33□□□□□ -1.88
VPS54Q9P1Q0 TMEM251P1-201ENST00000503717 318 ntBASIC3.33□□□□□ -1.88
VPS54Q9P1Q0 AC096577.1-203ENST00000506386 541 ntTSL 3 BASIC3.33□□□□□ -1.88
VPS54Q9P1Q0 RNA5SP380-201ENST00000517190 98 ntBASIC3.33□□□□□ -1.88
VPS54Q9P1Q0 AC024958.1-201ENST00000519364 902 ntTSL 5 BASIC3.33□□□□□ -1.88
VPS54Q9P1Q0 AC009511.1-201ENST00000543527 191 ntTSL 5 BASIC3.33□□□□□ -1.88
VPS54Q9P1Q0 AC025271.3-201ENST00000563031 255 ntTSL 5 BASIC3.33□□□□□ -1.88
VPS54Q9P1Q0 AC034105.3-201ENST00000565294 442 ntBASIC3.33□□□□□ -1.88
VPS54Q9P1Q0 LIVAR-201ENST00000578633 384 ntTSL 3 BASIC3.33□□□□□ -1.88
VPS54Q9P1Q0 MIR4637-201ENST00000582405 84 ntBASIC3.33□□□□□ -1.88
VPS54Q9P1Q0 AP005380.1-201ENST00000584896 547 ntTSL 4 BASIC3.33□□□□□ -1.88
VPS54Q9P1Q0 RPL23AP92-201ENST00000603609 255 ntBASIC3.33□□□□□ -1.88
VPS54Q9P1Q0 AC107294.3-201ENST00000609211 526 ntBASIC3.33□□□□□ -1.88
VPS54Q9P1Q0 RASSF8-215ENST00000611440 852 ntTSL 5 BASIC3.33□□□□□ -1.88
VPS54Q9P1Q0 AC090772.4-201ENST00000623599 362 ntBASIC3.33□□□□□ -1.88
VPS54Q9P1Q0 AL078595.3-201ENST00000623815 1166 ntBASIC3.33□□□□□ -1.88
VPS54Q9P1Q0 MUM1L1-203ENST00000372552 3957 ntAPPRIS P1 TSL 5 BASIC3.33□□□□□ -1.88
VPS54Q9P1Q0 SLC10A5P1-201ENST00000379063 1306 ntBASIC3.33□□□□□ -1.88
VPS54Q9P1Q0 PRKACB-207ENST00000394838 4294 ntTSL 5 BASIC3.33□□□□□ -1.88
VPS54Q9P1Q0 TUSC7-203ENST00000477539 2415 ntTSL 1 (best) BASIC3.33□□□□□ -1.88
VPS54Q9P1Q0 TMEM68-218ENST00000617782 2477 ntAPPRIS P1 TSL 5 BASIC3.33□□□□□ -1.88
VPS54Q9P1Q0 KIAA1107-202ENST00000636278 4065 ntAPPRIS P1 TSL 5 BASIC3.33□□□□□ -1.88
VPS54Q9P1Q0 DCUN1D1-208ENST00000632685 3147 ntTSL 1 (best) BASIC3.33□□□□□ -1.88
VPS54Q9P1Q0 PIK3C2G-201ENST00000266497 4764 ntAPPRIS P1 TSL 1 (best) BASIC3.32□□□□□ -1.88
VPS54Q9P1Q0 RNU1-35P-201ENST00000362782 153 ntBASIC3.32□□□□□ -1.88
VPS54Q9P1Q0 RNU1-140P-201ENST00000365040 165 ntBASIC3.32□□□□□ -1.88
VPS54Q9P1Q0 SNORD51-201ENST00000384320 80 ntBASIC3.32□□□□□ -1.88
VPS54Q9P1Q0 MOB4-205ENST00000409916 829 ntTSL 3 BASIC3.32□□□□□ -1.88
VPS54Q9P1Q0 EEF1A1P41-201ENST00000414667 207 ntBASIC3.32□□□□□ -1.88
VPS54Q9P1Q0 LHFPL3-AS1-203ENST00000417290 950 ntTSL 1 (best) BASIC3.32□□□□□ -1.88
VPS54Q9P1Q0 RPL23AP83-201ENST00000434984 473 ntBASIC3.32□□□□□ -1.88
VPS54Q9P1Q0 OR5H14-201ENST00000437310 1080 ntAPPRIS P1 BASIC3.32□□□□□ -1.88
VPS54Q9P1Q0 AC020743.3-201ENST00000440351 360 ntTSL 3 BASIC3.32□□□□□ -1.88
VPS54Q9P1Q0 RABEPKP1-201ENST00000440529 1026 ntBASIC3.32□□□□□ -1.88
VPS54Q9P1Q0 MTND2P20-201ENST00000440805 661 ntBASIC3.32□□□□□ -1.88
VPS54Q9P1Q0 NANOGNBP1-201ENST00000448444 480 ntBASIC3.32□□□□□ -1.88
VPS54Q9P1Q0 AC140076.1-201ENST00000449897 361 ntBASIC3.32□□□□□ -1.88
VPS54Q9P1Q0 OFD1P3Y-201ENST00000453312 783 ntBASIC3.32□□□□□ -1.88
VPS54Q9P1Q0 AC026410.2-201ENST00000460281 156 ntBASIC3.32□□□□□ -1.88
VPS54Q9P1Q0 AC011825.1-201ENST00000484967 388 ntBASIC3.32□□□□□ -1.88
VPS54Q9P1Q0 RN7SL283P-201ENST00000489055 303 ntBASIC3.32□□□□□ -1.88
VPS54Q9P1Q0 AC010625.1-201ENST00000511296 403 ntBASIC3.32□□□□□ -1.88
VPS54Q9P1Q0 AC090833.1-201ENST00000513853 806 ntTSL 3 BASIC3.32□□□□□ -1.88
VPS54Q9P1Q0 RNY4P37-201ENST00000516225 96 ntBASIC3.32□□□□□ -1.88
VPS54Q9P1Q0 LINC02143-201ENST00000519929 520 ntTSL 3 BASIC3.32□□□□□ -1.88
VPS54Q9P1Q0 AC010185.1-201ENST00000542489 456 ntTSL 3 BASIC3.32□□□□□ -1.88
VPS54Q9P1Q0 AC008147.1-201ENST00000551284 325 ntTSL 3 BASIC3.32□□□□□ -1.88
VPS54Q9P1Q0 TRAV37-201ENST00000553906 342 ntBASIC3.32□□□□□ -1.88
VPS54Q9P1Q0 AC083760.1-201ENST00000589621 670 ntBASIC3.32□□□□□ -1.88
VPS54Q9P1Q0 AL109653.1-201ENST00000603091 248 ntBASIC3.32□□□□□ -1.88
VPS54Q9P1Q0 AC243773.3-201ENST00000613270 256 ntBASIC3.32□□□□□ -1.88
VPS54Q9P1Q0 AC107075.1-201ENST00000613695 314 ntBASIC3.32□□□□□ -1.88
VPS54Q9P1Q0 AC091953.5-201ENST00000622919 233 ntBASIC3.32□□□□□ -1.88
VPS54Q9P1Q0 ARID2-206ENST00000457135 4356 ntTSL 1 (best) BASIC3.32□□□□□ -1.88
VPS54Q9P1Q0 TPTE2-202ENST00000382978 1677 ntTSL 5 BASIC3.32□□□□□ -1.88
VPS54Q9P1Q0 AC110774.1-201ENST00000623567 2018 ntBASIC3.32□□□□□ -1.88
VPS54Q9P1Q0 TCF12-203ENST00000343827 3956 ntTSL 1 (best) BASIC3.32□□□□□ -1.88
VPS54Q9P1Q0 CCDC30-212ENST00000507855 2445 ntAPPRIS ALT2 TSL 1 (best) BASIC3.31□□□□□ -1.88
VPS54Q9P1Q0 SLC27A2-203ENST00000544960 2025 ntTSL 2 BASIC3.31□□□□□ -1.88
VPS54Q9P1Q0 ZNF807-201ENST00000328088 1707 ntBASIC3.31□□□□□ -1.88
VPS54Q9P1Q0 AC021237.1-201ENST00000504175 1643 ntTSL 2 BASIC3.31□□□□□ -1.88
VPS54Q9P1Q0 AL355596.1-201ENST00000565399 3996 ntBASIC3.31□□□□□ -1.88
VPS54Q9P1Q0 GNG5P1-201ENST00000255500 204 ntBASIC3.31□□□□□ -1.88
VPS54Q9P1Q0 Y_RNA.192-201ENST00000363977 102 ntBASIC3.31□□□□□ -1.88
VPS54Q9P1Q0 RNU6-1122P-201ENST00000384449 107 ntBASIC3.31□□□□□ -1.88
VPS54Q9P1Q0 RNU6-906P-201ENST00000384700 70 ntBASIC3.31□□□□□ -1.88
VPS54Q9P1Q0 UBA52P6-201ENST00000399822 382 ntBASIC3.31□□□□□ -1.88
VPS54Q9P1Q0 AL354719.1-201ENST00000406535 843 ntBASIC3.31□□□□□ -1.88
VPS54Q9P1Q0 SUMO1-205ENST00000409205 534 ntTSL 2 BASIC3.31□□□□□ -1.88
VPS54Q9P1Q0 RN7SKP58-201ENST00000411010 305 ntBASIC3.31□□□□□ -1.88
VPS54Q9P1Q0 AL589765.2-201ENST00000420382 424 ntTSL 3 BASIC3.31□□□□□ -1.88
VPS54Q9P1Q0 AC099677.1-201ENST00000420575 175 ntBASIC3.31□□□□□ -1.88
VPS54Q9P1Q0 AL049637.1-201ENST00000424664 503 ntTSL 5 BASIC3.31□□□□□ -1.88
VPS54Q9P1Q0 UBE2E2-AS1-202ENST00000430018 499 ntTSL 2 BASIC3.31□□□□□ -1.88
VPS54Q9P1Q0 RPL23AP74-201ENST00000437246 471 ntBASIC3.31□□□□□ -1.88
VPS54Q9P1Q0 AP002512.3-201ENST00000440231 985 ntAPPRIS P1 BASIC3.31□□□□□ -1.88
Retrieved 100 of 98,524 protein–RNA pairs in 114.8 ms