Protein–RNA interactions for Protein: Q96RU2

USP28, Ubiquitin carboxyl-terminal hydrolase 28, humanhuman

Predictions only

Length 1,077 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP28Q96RU2 AC018714.1-201ENST00000605028 208 ntBASIC3.5□□□□□ -1.85
USP28Q96RU2 AL592221.1-201ENST00000605266 382 ntBASIC3.5□□□□□ -1.85
USP28Q96RU2 AP001521.1-201ENST00000609150 300 ntBASIC3.5□□□□□ -1.85
USP28Q96RU2 AC007318.2-201ENST00000620999 243 ntBASIC3.5□□□□□ -1.85
USP28Q96RU2 TTN-AS1-263ENST00000627527 784 ntTSL 5 BASIC3.5□□□□□ -1.85
USP28Q96RU2 AC011139.1-202ENST00000637744 563 ntTSL 5 BASIC3.5□□□□□ -1.85
USP28Q96RU2 RNF6-201ENST00000346166 3282 ntAPPRIS P1 TSL 1 (best) BASIC3.5□□□□□ -1.85
USP28Q96RU2 AC005183.1-201ENST00000603687 1979 ntBASIC3.5□□□□□ -1.85
USP28Q96RU2 JCHAIN-206ENST00000543780 1406 ntAPPRIS P1 TSL 1 (best) BASIC3.5□□□□□ -1.85
USP28Q96RU2 ISPD-AS1-202ENST00000438573 2252 ntTSL 1 (best) BASIC3.5□□□□□ -1.85
USP28Q96RU2 ZNF734P-201ENST00000419494 1534 ntBASIC3.49□□□□□ -1.85
USP28Q96RU2 AL513185.3-201ENST00000433335 1300 ntBASIC3.49□□□□□ -1.85
USP28Q96RU2 ROCK1P1-203ENST00000608049 2457 ntTSL 1 (best) BASIC3.49□□□□□ -1.85
USP28Q96RU2 ARPP19-211ENST00000568196 1489 ntTSL 2 BASIC3.49□□□□□ -1.85
USP28Q96RU2 MTND5P19-201ENST00000424872 1794 ntBASIC3.49□□□□□ -1.85
USP28Q96RU2 QKI-202ENST00000361195 1063 ntTSL 1 (best) BASIC3.49□□□□□ -1.85
USP28Q96RU2 RNU6-553P-201ENST00000364047 96 ntBASIC3.49□□□□□ -1.85
USP28Q96RU2 MIR449B-201ENST00000384995 97 ntBASIC3.49□□□□□ -1.85
USP28Q96RU2 RPL23AP29-201ENST00000397284 453 ntBASIC3.49□□□□□ -1.85
USP28Q96RU2 AL022400.1-201ENST00000423946 935 ntBASIC3.49□□□□□ -1.85
USP28Q96RU2 UBE2D3P4-201ENST00000441973 436 ntBASIC3.49□□□□□ -1.85
USP28Q96RU2 Z95327.1-201ENST00000446082 482 ntBASIC3.49□□□□□ -1.85
USP28Q96RU2 RSL24D1P3-201ENST00000449255 495 ntBASIC3.49□□□□□ -1.85
USP28Q96RU2 OR6C5P-201ENST00000452388 923 ntBASIC3.49□□□□□ -1.85
USP28Q96RU2 RPL21P41-201ENST00000459863 264 ntBASIC3.49□□□□□ -1.85
USP28Q96RU2 BZW1P2-201ENST00000473537 826 ntBASIC3.49□□□□□ -1.85
USP28Q96RU2 RPS3AP43-201ENST00000479743 781 ntBASIC3.49□□□□□ -1.85
USP28Q96RU2 AC092185.1-201ENST00000491371 97 ntBASIC3.49□□□□□ -1.85
USP28Q96RU2 LINC02462-201ENST00000503009 430 ntTSL 5 BASIC3.49□□□□□ -1.85
USP28Q96RU2 HSPD1P15-201ENST00000505573 1122 ntBASIC3.49□□□□□ -1.85
USP28Q96RU2 AC104304.1-201ENST00000505797 291 ntAPPRIS P1 TSL 3 BASIC3.49□□□□□ -1.85
USP28Q96RU2 LINC02213-202ENST00000506021 774 ntTSL 2 BASIC3.49□□□□□ -1.85
USP28Q96RU2 AC111000.2-201ENST00000507775 550 ntBASIC3.49□□□□□ -1.85
USP28Q96RU2 AC113385.1-201ENST00000511468 563 ntTSL 4 BASIC3.49□□□□□ -1.85
USP28Q96RU2 LINC02500-201ENST00000512547 493 ntTSL 3 BASIC3.49□□□□□ -1.85
USP28Q96RU2 AC027309.2-201ENST00000520566 192 ntBASIC3.49□□□□□ -1.85
USP28Q96RU2 IGHV3-76-201ENST00000522465 295 ntBASIC3.49□□□□□ -1.85
USP28Q96RU2 SLC2A13P1-201ENST00000531560 322 ntBASIC3.49□□□□□ -1.85
USP28Q96RU2 AC093025.1-201ENST00000547795 569 ntTSL 2 BASIC3.49□□□□□ -1.85
USP28Q96RU2 TRAV37-201ENST00000553906 342 ntBASIC3.49□□□□□ -1.85
USP28Q96RU2 AL163153.1-201ENST00000554223 283 ntBASIC3.49□□□□□ -1.85
USP28Q96RU2 NR2F2-AS1-208ENST00000560395 441 ntTSL 5 BASIC3.49□□□□□ -1.85
USP28Q96RU2 AC090616.2-202ENST00000584248 222 ntBASIC3.49□□□□□ -1.85
USP28Q96RU2 AC016866.2-201ENST00000585251 502 ntTSL 2 BASIC3.49□□□□□ -1.85
USP28Q96RU2 AL157938.2-203ENST00000589540 931 ntTSL 5 BASIC3.49□□□□□ -1.85
USP28Q96RU2 AC010738.1-201ENST00000604970 987 ntBASIC3.49□□□□□ -1.85
USP28Q96RU2 AC124312.4-201ENST00000605533 310 ntBASIC3.49□□□□□ -1.85
USP28Q96RU2 AC107294.3-201ENST00000609211 526 ntBASIC3.49□□□□□ -1.85
USP28Q96RU2 C8orf59-207ENST00000611854 563 ntAPPRIS P1 TSL 2 BASIC3.49□□□□□ -1.85
USP28Q96RU2 MIR7112-201ENST00000616126 65 ntBASIC3.49□□□□□ -1.85
USP28Q96RU2 AC034229.5-201ENST00000624258 185 ntBASIC3.49□□□□□ -1.85
USP28Q96RU2 OR8B1P-202ENST00000641132 1178 ntBASIC3.49□□□□□ -1.85
USP28Q96RU2 TLR6-205ENST00000610323 1443 ntTSL 5 BASIC3.49□□□□□ -1.85
USP28Q96RU2 TMEM27-201ENST00000380342 1578 ntAPPRIS P1 TSL 1 (best) BASIC3.49□□□□□ -1.85
USP28Q96RU2 DBF4P1-201ENST00000412976 1892 ntBASIC3.49□□□□□ -1.85
USP28Q96RU2 OXR1-207ENST00000497705 2007 ntTSL 2 BASIC3.49□□□□□ -1.85
USP28Q96RU2 NEB-220ENST00000618972 26307 ntAPPRIS ALT2 TSL 5 BASIC3.49□□□□□ -1.85
USP28Q96RU2 ADAMTS9-AS1-207ENST00000594810 3609 ntTSL 4 BASIC3.49□□□□□ -1.85
USP28Q96RU2 AC117529.2-201ENST00000512159 2068 ntBASIC3.48□□□□□ -1.85
USP28Q96RU2 ATF2-221ENST00000538946 1325 ntTSL 5 BASIC3.48□□□□□ -1.85
USP28Q96RU2 STAU2-207ENST00000519961 3928 ntTSL 1 (best) BASIC3.48□□□□□ -1.85
USP28Q96RU2 LPAR6-209ENST00000620633 2175 ntAPPRIS P1 TSL 5 BASIC3.48□□□□□ -1.85
USP28Q96RU2 PRKACB-219ENST00000614872 4306 ntTSL 1 (best) BASIC3.48□□□□□ -1.85
USP28Q96RU2 LINC00301-201ENST00000320202 852 ntTSL 2 BASIC3.48□□□□□ -1.85
USP28Q96RU2 GYPA-201ENST00000324022 751 ntAPPRIS ALT2 TSL 1 (best) BASIC3.48□□□□□ -1.85
USP28Q96RU2 RNU6-50P-201ENST00000362356 103 ntBASIC3.48□□□□□ -1.85
USP28Q96RU2 SNORA4.1-201ENST00000364263 144 ntBASIC3.48□□□□□ -1.85
USP28Q96RU2 SNORD15B-201ENST00000384714 146 ntBASIC3.48□□□□□ -1.85
USP28Q96RU2 TAS2R19-201ENST00000390673 1002 ntAPPRIS P1 BASIC3.48□□□□□ -1.85
USP28Q96RU2 SNORA48.8-201ENST00000391324 134 ntBASIC3.48□□□□□ -1.85
USP28Q96RU2 RPL31P1-201ENST00000398116 372 ntBASIC3.48□□□□□ -1.85
USP28Q96RU2 AL121978.1-201ENST00000402778 359 ntBASIC3.48□□□□□ -1.85
USP28Q96RU2 AL021407.1-201ENST00000404531 386 ntBASIC3.48□□□□□ -1.85
USP28Q96RU2 RPL7P8-201ENST00000411964 730 ntBASIC3.48□□□□□ -1.85
USP28Q96RU2 LINC01934-201ENST00000414750 391 ntTSL 3 BASIC3.48□□□□□ -1.85
USP28Q96RU2 LANCL1-AS1-201ENST00000416344 714 ntTSL 3 BASIC3.48□□□□□ -1.85
USP28Q96RU2 AC007271.1-201ENST00000428188 382 ntTSL 3 BASIC3.48□□□□□ -1.85
USP28Q96RU2 INTS6L-AS1-201ENST00000430820 398 ntTSL 3 BASIC3.48□□□□□ -1.85
USP28Q96RU2 OR5H14-201ENST00000437310 1080 ntAPPRIS P1 BASIC3.48□□□□□ -1.85
USP28Q96RU2 LINC00278-202ENST00000444263 587 ntTSL 3 BASIC3.48□□□□□ -1.85
USP28Q96RU2 HMGN3P1-201ENST00000453847 193 ntBASIC3.48□□□□□ -1.85
USP28Q96RU2 AL606519.1-201ENST00000458146 580 ntTSL 2 BASIC3.48□□□□□ -1.85
USP28Q96RU2 snoU13.3-201ENST00000459441 104 ntBASIC3.48□□□□□ -1.85
USP28Q96RU2 AC013828.1-201ENST00000481845 158 ntBASIC3.48□□□□□ -1.85
USP28Q96RU2 RPF2P2-201ENST00000504693 896 ntBASIC3.48□□□□□ -1.85
USP28Q96RU2 CSN1S1-204ENST00000507772 895 ntAPPRIS ALT2 TSL 5 BASIC3.48□□□□□ -1.85
USP28Q96RU2 CTD-2350J17.1-201ENST00000509228 362 ntTSL 2 BASIC3.48□□□□□ -1.85
USP28Q96RU2 MTCYBP37-201ENST00000510642 1133 ntBASIC3.48□□□□□ -1.85
USP28Q96RU2 LTV1P1-201ENST00000510683 1237 ntBASIC3.48□□□□□ -1.85
USP28Q96RU2 AC005150.1-201ENST00000512831 628 ntTSL 2 BASIC3.48□□□□□ -1.85
USP28Q96RU2 JKAMP-212ENST00000556985 592 ntTSL 2 BASIC3.48□□□□□ -1.85
USP28Q96RU2 AC046158.1-201ENST00000563408 719 ntTSL 3 BASIC3.48□□□□□ -1.85
USP28Q96RU2 MIR4474-201ENST00000579189 78 ntBASIC3.48□□□□□ -1.85
USP28Q96RU2 PIGPP4-201ENST00000584447 307 ntBASIC3.48□□□□□ -1.85
USP28Q96RU2 AC245389.1-201ENST00000605141 529 ntBASIC3.48□□□□□ -1.85
USP28Q96RU2 AC112220.3-201ENST00000605502 502 ntBASIC3.48□□□□□ -1.85
USP28Q96RU2 AC006270.3-201ENST00000605967 1036 ntBASIC3.48□□□□□ -1.85
USP28Q96RU2 AC245297.2-201ENST00000610119 565 ntBASIC3.48□□□□□ -1.85
USP28Q96RU2 AL136981.2-201ENST00000617319 734 ntBASIC3.48□□□□□ -1.85
USP28Q96RU2 AC099506.2-201ENST00000623074 221 ntBASIC3.48□□□□□ -1.85
Retrieved 100 of 98,524 protein–RNA pairs in 92.4 ms