Protein–RNA interactions for Protein: Q96MW1

CCDC43, Coiled-coil domain-containing protein 43, humanhuman

Known RBP Predictions only

Length 224 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC43Q96MW1 SPIC-201ENST00000551346 1132 ntAPPRIS P1 TSL 1 (best) BASIC3.47□□□□□ -1.85
CCDC43Q96MW1 AC069029.1-201ENST00000558736 263 ntTSL 2 BASIC3.47□□□□□ -1.85
CCDC43Q96MW1 AC092718.6-202ENST00000563072 408 ntTSL 2 BASIC3.47□□□□□ -1.85
CCDC43Q96MW1 AC009117.2-201ENST00000565374 504 ntTSL 3 BASIC3.47□□□□□ -1.85
CCDC43Q96MW1 AC009271.1-202ENST00000588803 492 ntTSL 3 BASIC3.47□□□□□ -1.85
CCDC43Q96MW1 AC069431.2-201ENST00000604149 1099 ntBASIC3.47□□□□□ -1.85
CCDC43Q96MW1 AL158050.2-201ENST00000605336 568 ntBASIC3.47□□□□□ -1.85
CCDC43Q96MW1 AL356130.2-201ENST00000612554 404 ntTSL 3 BASIC3.47□□□□□ -1.85
CCDC43Q96MW1 AL121895.2-201ENST00000619558 447 ntBASIC3.47□□□□□ -1.85
CCDC43Q96MW1 MIS12-201ENST00000381165 2505 ntAPPRIS P1 TSL 1 (best) BASIC3.47□□□□□ -1.85
CCDC43Q96MW1 MIER3-203ENST00000381213 5198 ntAPPRIS P3 TSL 1 (best) BASIC3.47□□□□□ -1.85
CCDC43Q96MW1 MAPK10-322ENST00000641485 4530 ntBASIC3.47□□□□□ -1.85
CCDC43Q96MW1 RNF128-202ENST00000324342 2654 ntTSL 1 (best) BASIC3.47□□□□□ -1.85
CCDC43Q96MW1 AL353743.1-202ENST00000431724 1695 ntBASIC3.46□□□□□ -1.85
CCDC43Q96MW1 RAPGEF6-202ENST00000308008 4176 ntTSL 1 (best) BASIC3.46□□□□□ -1.86
CCDC43Q96MW1 BAZ2B-202ENST00000343439 2364 ntTSL 5 BASIC3.46□□□□□ -1.86
CCDC43Q96MW1 MKLN1-201ENST00000352689 11156 ntAPPRIS P1 TSL 1 (best) BASIC3.46□□□□□ -1.86
CCDC43Q96MW1 CXCL10-201ENST00000306602 1176 ntAPPRIS P1 TSL 1 (best) BASIC3.46□□□□□ -1.86
CCDC43Q96MW1 GYPA-201ENST00000324022 751 ntAPPRIS ALT2 TSL 1 (best) BASIC3.46□□□□□ -1.86
CCDC43Q96MW1 DNAJC12-202ENST00000339758 1064 ntTSL 1 (best) BASIC3.46□□□□□ -1.86
CCDC43Q96MW1 DEFB108F-201ENST00000344638 222 ntBASIC3.46□□□□□ -1.86
CCDC43Q96MW1 MIR422A-201ENST00000362286 90 ntBASIC3.46□□□□□ -1.86
CCDC43Q96MW1 U3.6-201ENST00000363622 211 ntBASIC3.46□□□□□ -1.86
CCDC43Q96MW1 CUBN-201ENST00000377823 705 ntTSL 3 BASIC3.46□□□□□ -1.86
CCDC43Q96MW1 SNORD67-201ENST00000390833 111 ntBASIC3.46□□□□□ -1.86
CCDC43Q96MW1 AC110754.1-201ENST00000399740 601 ntBASIC3.46□□□□□ -1.86
CCDC43Q96MW1 HMGB1P17-201ENST00000403495 628 ntBASIC3.46□□□□□ -1.86
CCDC43Q96MW1 AL138885.1-201ENST00000405921 675 ntBASIC3.46□□□□□ -1.86
CCDC43Q96MW1 AC019064.1-201ENST00000414796 499 ntTSL 2 BASIC3.46□□□□□ -1.86
CCDC43Q96MW1 AL353771.1-201ENST00000422107 457 ntTSL 3 BASIC3.46□□□□□ -1.86
CCDC43Q96MW1 AC022018.1-201ENST00000430685 241 ntBASIC3.46□□□□□ -1.86
CCDC43Q96MW1 RPL23AP69-201ENST00000431134 458 ntBASIC3.46□□□□□ -1.86
CCDC43Q96MW1 MTND4P6-201ENST00000438297 472 ntBASIC3.46□□□□□ -1.86
CCDC43Q96MW1 AC018643.1-201ENST00000445459 414 ntTSL 5 BASIC3.46□□□□□ -1.86
CCDC43Q96MW1 AL358794.1-201ENST00000445689 381 ntBASIC3.46□□□□□ -1.86
CCDC43Q96MW1 AC011979.1-201ENST00000472300 483 ntBASIC3.46□□□□□ -1.86
CCDC43Q96MW1 AC068724.1-201ENST00000487100 792 ntBASIC3.46□□□□□ -1.86
CCDC43Q96MW1 CSN1S1-204ENST00000507772 895 ntAPPRIS ALT2 TSL 5 BASIC3.46□□□□□ -1.86
CCDC43Q96MW1 CTD-2350J17.1-201ENST00000509228 362 ntTSL 2 BASIC3.46□□□□□ -1.86
CCDC43Q96MW1 AC109464.2-201ENST00000510242 943 ntBASIC3.46□□□□□ -1.86
CCDC43Q96MW1 AC022679.1-202ENST00000520251 376 ntTSL 3 BASIC3.46□□□□□ -1.86
CCDC43Q96MW1 DEFB108D-201ENST00000527787 222 ntBASIC3.46□□□□□ -1.86
CCDC43Q96MW1 PIH1D2-206ENST00000528775 1025 ntTSL 5 BASIC3.46□□□□□ -1.86
CCDC43Q96MW1 AP002404.1-201ENST00000532005 451 ntBASIC3.46□□□□□ -1.86
CCDC43Q96MW1 GLIPR1L1-204ENST00000548623 484 ntTSL 3 BASIC3.46□□□□□ -1.86
CCDC43Q96MW1 AC021979.1-201ENST00000553822 336 ntTSL 3 BASIC3.46□□□□□ -1.86
CCDC43Q96MW1 OR4T1P-201ENST00000554933 911 ntBASIC3.46□□□□□ -1.86
CCDC43Q96MW1 AC008739.1-201ENST00000598137 575 ntTSL 2 BASIC3.46□□□□□ -1.86
CCDC43Q96MW1 AC021749.1-201ENST00000604322 607 ntBASIC3.46□□□□□ -1.86
CCDC43Q96MW1 HSPE1P7-201ENST00000604681 321 ntBASIC3.46□□□□□ -1.86
CCDC43Q96MW1 AC011330.2-201ENST00000621680 635 ntBASIC3.46□□□□□ -1.86
CCDC43Q96MW1 AP003481.1-201ENST00000637808 351 ntTSL 5 BASIC3.46□□□□□ -1.86
CCDC43Q96MW1 ZFYVE16-202ENST00000505560 6599 ntAPPRIS P1 TSL 1 (best) BASIC3.46□□□□□ -1.86
CCDC43Q96MW1 SLC10A5P1-201ENST00000379063 1306 ntBASIC3.45□□□□□ -1.86
CCDC43Q96MW1 CCDC82-201ENST00000278520 2941 ntAPPRIS P2 TSL 5 BASIC3.45□□□□□ -1.86
CCDC43Q96MW1 CUL3-204ENST00000409777 3147 ntTSL 1 (best) BASIC3.45□□□□□ -1.86
CCDC43Q96MW1 SYTL2-230ENST00000634661 6672 ntTSL 5 BASIC3.45□□□□□ -1.86
CCDC43Q96MW1 TRAV7-201ENST00000390429 337 ntAPPRIS P1 BASIC3.45□□□□□ -1.86
CCDC43Q96MW1 RNA5SP252-201ENST00000391131 119 ntBASIC3.45□□□□□ -1.86
CCDC43Q96MW1 TPMTP2-201ENST00000414372 726 ntBASIC3.45□□□□□ -1.86
CCDC43Q96MW1 LANCL1-AS1-202ENST00000420418 476 ntTSL 3 BASIC3.45□□□□□ -1.86
CCDC43Q96MW1 RPL27AP8-201ENST00000424277 446 ntBASIC3.45□□□□□ -1.86
CCDC43Q96MW1 RPL7P46-201ENST00000425129 740 ntBASIC3.45□□□□□ -1.86
CCDC43Q96MW1 NANOGP2-201ENST00000435391 727 ntBASIC3.45□□□□□ -1.86
CCDC43Q96MW1 AC009969.1-201ENST00000438726 172 ntBASIC3.45□□□□□ -1.86
CCDC43Q96MW1 DIAPH2-AS1-202ENST00000445414 606 ntTSL 2 BASIC3.45□□□□□ -1.86
CCDC43Q96MW1 AL031183.1-201ENST00000457667 207 ntBASIC3.45□□□□□ -1.86
CCDC43Q96MW1 AC092185.1-201ENST00000491371 97 ntBASIC3.45□□□□□ -1.86
CCDC43Q96MW1 PRELID3BP6-201ENST00000503839 571 ntBASIC3.45□□□□□ -1.86
CCDC43Q96MW1 RNA5SP341-201ENST00000516261 117 ntBASIC3.45□□□□□ -1.86
CCDC43Q96MW1 SNORA74D-201ENST00000516404 141 ntBASIC3.45□□□□□ -1.86
CCDC43Q96MW1 AC103783.1-201ENST00000520506 373 ntBASIC3.45□□□□□ -1.86
CCDC43Q96MW1 MTND2P7-201ENST00000521337 640 ntBASIC3.45□□□□□ -1.86
CCDC43Q96MW1 OR10V3P-201ENST00000525712 725 ntBASIC3.45□□□□□ -1.86
CCDC43Q96MW1 CACNA1C-AS4-201ENST00000544415 735 ntTSL 3 BASIC3.45□□□□□ -1.86
CCDC43Q96MW1 TRAV37-201ENST00000553906 342 ntBASIC3.45□□□□□ -1.86
CCDC43Q96MW1 LINC01467-201ENST00000554211 1187 ntTSL 1 (best) BASIC3.45□□□□□ -1.86
CCDC43Q96MW1 GOLGA8M-203ENST00000568033 557 ntTSL 4 BASIC3.45□□□□□ -1.86
CCDC43Q96MW1 AC090615.1-201ENST00000577519 154 ntBASIC3.45□□□□□ -1.86
CCDC43Q96MW1 BNIP3P26-201ENST00000600827 554 ntBASIC3.45□□□□□ -1.86
CCDC43Q96MW1 AC006539.2-201ENST00000601729 572 ntBASIC3.45□□□□□ -1.86
CCDC43Q96MW1 AC100793.4-201ENST00000613683 429 ntBASIC3.45□□□□□ -1.86
CCDC43Q96MW1 AL590099.1-201ENST00000615276 138 ntBASIC3.45□□□□□ -1.86
CCDC43Q96MW1 AC231657.1-201ENST00000624313 397 ntBASIC3.45□□□□□ -1.86
CCDC43Q96MW1 LINC01002-215ENST00000632203 314 ntTSL 5 BASIC3.45□□□□□ -1.86
CCDC43Q96MW1 LRRC49-224ENST00000560691 2531 ntTSL 2 BASIC3.45□□□□□ -1.86
CCDC43Q96MW1 FAM214A-204ENST00000546305 3697 ntTSL 2 BASIC3.45□□□□□ -1.86
CCDC43Q96MW1 TEX30-201ENST00000376019 1689 ntTSL 2 BASIC3.45□□□□□ -1.86
CCDC43Q96MW1 PROS1-203ENST00000407433 3335 ntTSL 1 (best) BASIC3.45□□□□□ -1.86
CCDC43Q96MW1 SCN1A-219ENST00000641575 12874 ntAPPRIS ALT1 BASIC3.44□□□□□ -1.86
CCDC43Q96MW1 OR9G4-204ENST00000641668 2608 ntAPPRIS P1 BASIC3.44□□□□□ -1.86
CCDC43Q96MW1 AC093831.2-201ENST00000624393 3427 ntBASIC3.44□□□□□ -1.86
CCDC43Q96MW1 PP2D1-202ENST00000389050 2151 ntAPPRIS P1 TSL 5 BASIC3.44□□□□□ -1.86
CCDC43Q96MW1 TAS2R10-201ENST00000240619 1042 ntAPPRIS P1 BASIC3.44□□□□□ -1.86
CCDC43Q96MW1 ZNF679-201ENST00000255746 1297 ntAPPRIS P1 TSL 1 (best) BASIC3.44□□□□□ -1.86
CCDC43Q96MW1 CD24P4-201ENST00000382840 243 ntBASIC3.44□□□□□ -1.86
CCDC43Q96MW1 RNU6-1176P-201ENST00000390955 107 ntBASIC3.44□□□□□ -1.86
CCDC43Q96MW1 SAR1AP2-201ENST00000392696 594 ntBASIC3.44□□□□□ -1.86
CCDC43Q96MW1 FBXO11-201ENST00000402508 3844 ntAPPRIS P1 TSL 1 (best) BASIC3.44□□□□□ -1.86
CCDC43Q96MW1 RPS3AP24-201ENST00000407896 734 ntBASIC3.44□□□□□ -1.86
Retrieved 100 of 98,524 protein–RNA pairs in 110.5 ms