Protein–RNA interactions for Protein: Q96MR9

ZNF560, Zinc finger protein 560, humanhuman

Predictions only

Length 790 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF560Q96MR9 AL390862.1-201ENST00000635467 1469 ntBASIC3.33□□□□□ -1.88
ZNF560Q96MR9 RTKN2-202ENST00000373789 6641 ntAPPRIS P1 TSL 1 (best) BASIC3.33□□□□□ -1.88
ZNF560Q96MR9 AF165147.1-201ENST00000433310 6103 ntTSL 2 BASIC3.33□□□□□ -1.88
ZNF560Q96MR9 TEX30-201ENST00000376019 1689 ntTSL 2 BASIC3.33□□□□□ -1.88
ZNF560Q96MR9 SCFD1-207ENST00000544052 2058 ntTSL 2 BASIC3.32□□□□□ -1.88
ZNF560Q96MR9 RNU6-925P-201ENST00000384629 104 ntBASIC3.32□□□□□ -1.88
ZNF560Q96MR9 MIR135A2-201ENST00000384854 100 ntBASIC3.32□□□□□ -1.88
ZNF560Q96MR9 SNORA48.5-201ENST00000391143 135 ntBASIC3.32□□□□□ -1.88
ZNF560Q96MR9 RNU4-22P-201ENST00000411058 166 ntBASIC3.32□□□□□ -1.88
ZNF560Q96MR9 AC109780.2-201ENST00000413467 845 ntBASIC3.32□□□□□ -1.88
ZNF560Q96MR9 TPMTP2-201ENST00000414372 726 ntBASIC3.32□□□□□ -1.88
ZNF560Q96MR9 AC245291.1-201ENST00000419501 328 ntBASIC3.32□□□□□ -1.88
ZNF560Q96MR9 AC004160.1-205ENST00000428967 577 ntTSL 4 BASIC3.32□□□□□ -1.88
ZNF560Q96MR9 AL161937.1-201ENST00000444478 425 ntTSL 3 BASIC3.32□□□□□ -1.88
ZNF560Q96MR9 ZNF736P4Y-201ENST00000454995 1243 ntBASIC3.32□□□□□ -1.88
ZNF560Q96MR9 AC067945.3-201ENST00000456176 386 ntTSL 5 BASIC3.32□□□□□ -1.88
ZNF560Q96MR9 AC068724.1-201ENST00000487100 792 ntBASIC3.32□□□□□ -1.88
ZNF560Q96MR9 SATB1-216ENST00000491519 1000 ntTSL 2 BASIC3.32□□□□□ -1.88
ZNF560Q96MR9 AC104027.1-201ENST00000521887 300 ntBASIC3.32□□□□□ -1.88
ZNF560Q96MR9 LINC02286-201ENST00000552425 285 ntTSL 2 BASIC3.32□□□□□ -1.88
ZNF560Q96MR9 AF001550.1-201ENST00000572747 573 ntTSL 4 BASIC3.32□□□□□ -1.88
ZNF560Q96MR9 AC018371.1-201ENST00000584560 640 ntTSL 3 BASIC3.32□□□□□ -1.88
ZNF560Q96MR9 AC008507.1-201ENST00000587506 734 ntBASIC3.32□□□□□ -1.88
ZNF560Q96MR9 TUG1_1.1-201ENST00000610654 145 ntBASIC3.32□□□□□ -1.88
ZNF560Q96MR9 AC068831.7-201ENST00000616954 363 ntBASIC3.32□□□□□ -1.88
ZNF560Q96MR9 AC005539.1-201ENST00000443768 1479 ntBASIC3.32□□□□□ -1.88
ZNF560Q96MR9 EFTUD1P2-201ENST00000514817 1603 ntBASIC3.32□□□□□ -1.88
ZNF560Q96MR9 ZNF639-206ENST00000484866 1730 ntAPPRIS P1 TSL 2 BASIC3.32□□□□□ -1.88
ZNF560Q96MR9 LRRC39-201ENST00000342895 1881 ntAPPRIS P1 TSL 5 BASIC3.32□□□□□ -1.88
ZNF560Q96MR9 MUC15-205ENST00000529533 2084 ntTSL 1 (best) BASIC3.32□□□□□ -1.88
ZNF560Q96MR9 OXR1-206ENST00000449762 2621 ntTSL 1 (best) BASIC3.32□□□□□ -1.88
ZNF560Q96MR9 SLC27A2-203ENST00000544960 2025 ntTSL 2 BASIC3.31□□□□□ -1.88
ZNF560Q96MR9 LINC01376-202ENST00000424895 1949 ntTSL 2 BASIC3.31□□□□□ -1.88
ZNF560Q96MR9 RPL23AP57-201ENST00000332361 466 ntBASIC3.31□□□□□ -1.88
ZNF560Q96MR9 RNA5SP383-201ENST00000362934 120 ntBASIC3.31□□□□□ -1.88
ZNF560Q96MR9 RNU6-621P-201ENST00000364752 109 ntBASIC3.31□□□□□ -1.88
ZNF560Q96MR9 SNORD67-201ENST00000390833 111 ntBASIC3.31□□□□□ -1.88
ZNF560Q96MR9 SAR1AP2-201ENST00000392696 594 ntBASIC3.31□□□□□ -1.88
ZNF560Q96MR9 AL031679.1-201ENST00000400616 525 ntBASIC3.31□□□□□ -1.88
ZNF560Q96MR9 AL354719.1-201ENST00000406535 843 ntBASIC3.31□□□□□ -1.88
ZNF560Q96MR9 U3.42-201ENST00000408746 214 ntBASIC3.31□□□□□ -1.88
ZNF560Q96MR9 LINC01794-201ENST00000420187 549 ntTSL 4 BASIC3.31□□□□□ -1.88
ZNF560Q96MR9 AL513175.2-201ENST00000422071 443 ntBASIC3.31□□□□□ -1.88
ZNF560Q96MR9 AC233728.2-201ENST00000425348 757 ntBASIC3.31□□□□□ -1.88
ZNF560Q96MR9 LINC01052-201ENST00000437777 496 ntTSL 3 BASIC3.31□□□□□ -1.88
ZNF560Q96MR9 SDCBPP1-201ENST00000440192 890 ntBASIC3.31□□□□□ -1.88
ZNF560Q96MR9 AC006333.1-202ENST00000440504 555 ntTSL 4 BASIC3.31□□□□□ -1.88
ZNF560Q96MR9 RSL24D1P3-201ENST00000449255 495 ntBASIC3.31□□□□□ -1.88
ZNF560Q96MR9 ZNF886P-201ENST00000450781 723 ntBASIC3.31□□□□□ -1.88
ZNF560Q96MR9 OFD1P7Y-201ENST00000454643 1155 ntBASIC3.31□□□□□ -1.88
ZNF560Q96MR9 AC097493.1-201ENST00000463958 372 ntBASIC3.31□□□□□ -1.88
ZNF560Q96MR9 CBX3P3-201ENST00000508108 532 ntBASIC3.31□□□□□ -1.88
ZNF560Q96MR9 LINC02229-201ENST00000508486 661 ntTSL 3 BASIC3.31□□□□□ -1.88
ZNF560Q96MR9 AC008885.1-201ENST00000514930 301 ntBASIC3.31□□□□□ -1.88
ZNF560Q96MR9 RNU1-143P-201ENST00000516296 146 ntBASIC3.31□□□□□ -1.88
ZNF560Q96MR9 SNORA64.4-201ENST00000516632 81 ntBASIC3.31□□□□□ -1.88
ZNF560Q96MR9 AC009435.1-201ENST00000519555 574 ntTSL 4 BASIC3.31□□□□□ -1.88
ZNF560Q96MR9 AC117377.1-201ENST00000547633 1038 ntTSL 1 (best) BASIC3.31□□□□□ -1.88
ZNF560Q96MR9 SPIC-201ENST00000551346 1132 ntAPPRIS P1 TSL 1 (best) BASIC3.31□□□□□ -1.88
ZNF560Q96MR9 AC090615.1-201ENST00000577519 154 ntBASIC3.31□□□□□ -1.88
ZNF560Q96MR9 AC015908.4-201ENST00000582334 575 ntTSL 4 BASIC3.31□□□□□ -1.88
ZNF560Q96MR9 MIR7515HG-213ENST00000585872 758 ntTSL 5 BASIC3.31□□□□□ -1.88
ZNF560Q96MR9 AL133393.1-201ENST00000603277 287 ntBASIC3.31□□□□□ -1.88
ZNF560Q96MR9 AC106900.2-201ENST00000604994 317 ntBASIC3.31□□□□□ -1.88
ZNF560Q96MR9 AC005000.2-201ENST00000605468 310 ntBASIC3.31□□□□□ -1.88
ZNF560Q96MR9 AL390208.1-201ENST00000605885 644 ntBASIC3.31□□□□□ -1.88
ZNF560Q96MR9 U1.23-201ENST00000610293 146 ntBASIC3.31□□□□□ -1.88
ZNF560Q96MR9 RNU1-68P-201ENST00000615382 146 ntBASIC3.31□□□□□ -1.88
ZNF560Q96MR9 AL357080.1-201ENST00000617394 239 ntBASIC3.31□□□□□ -1.88
ZNF560Q96MR9 U1.39-201ENST00000621562 146 ntBASIC3.31□□□□□ -1.88
ZNF560Q96MR9 C20orf24-208ENST00000639924 351 ntTSL 5 BASIC3.31□□□□□ -1.88
ZNF560Q96MR9 POSTN-209ENST00000541179 3214 ntAPPRIS ALT2 TSL 1 (best) BASIC3.31□□□□□ -1.88
ZNF560Q96MR9 YWHAZ-211ENST00000457309 3007 ntAPPRIS P1 TSL 2 BASIC3.31□□□□□ -1.88
ZNF560Q96MR9 GMFB-208ENST00000554908 6721 ntTSL 1 (best) BASIC3.31□□□□□ -1.88
ZNF560Q96MR9 ATP2C1-202ENST00000359644 3401 ntAPPRIS P3 TSL 1 (best) BASIC3.31□□□□□ -1.88
ZNF560Q96MR9 ZBTB26-202ENST00000373656 4443 ntAPPRIS P1 TSL 1 (best) BASIC3.3□□□□□ -1.88
ZNF560Q96MR9 C8orf59-201ENST00000321777 325 ntTSL 1 (best) BASIC3.3□□□□□ -1.88
ZNF560Q96MR9 RNU6-28P-201ENST00000362378 107 ntBASIC3.3□□□□□ -1.88
ZNF560Q96MR9 U3.11-201ENST00000364476 212 ntBASIC3.3□□□□□ -1.88
ZNF560Q96MR9 SNORA71.1-201ENST00000364523 117 ntBASIC3.3□□□□□ -1.88
ZNF560Q96MR9 RNU1-140P-201ENST00000365040 165 ntBASIC3.3□□□□□ -1.88
ZNF560Q96MR9 PTPRC-202ENST00000367364 1017 ntTSL 1 (best) BASIC3.3□□□□□ -1.88
ZNF560Q96MR9 KRTAP22-2-201ENST00000382830 293 ntAPPRIS P1 BASIC3.3□□□□□ -1.88
ZNF560Q96MR9 AC110754.1-201ENST00000399740 601 ntBASIC3.3□□□□□ -1.88
ZNF560Q96MR9 AC006960.1-201ENST00000419980 153 ntBASIC3.3□□□□□ -1.88
ZNF560Q96MR9 GRK5-IT1-201ENST00000421206 400 ntTSL 3 BASIC3.3□□□□□ -1.88
ZNF560Q96MR9 ZMYM4-AS1-201ENST00000432683 459 ntTSL 2 BASIC3.3□□□□□ -1.88
ZNF560Q96MR9 RAC1P7-201ENST00000445367 377 ntBASIC3.3□□□□□ -1.88
ZNF560Q96MR9 PPP2R2B-IT1-201ENST00000505921 447 ntTSL 3 BASIC3.3□□□□□ -1.88
ZNF560Q96MR9 AC079395.1-201ENST00000510981 262 ntBASIC3.3□□□□□ -1.88
ZNF560Q96MR9 LINC02143-201ENST00000519929 520 ntTSL 3 BASIC3.3□□□□□ -1.88
ZNF560Q96MR9 ERHP1-201ENST00000523006 310 ntBASIC3.3□□□□□ -1.88
ZNF560Q96MR9 AC105180.1-201ENST00000523317 426 ntTSL 3 BASIC3.3□□□□□ -1.88
ZNF560Q96MR9 AP001804.3-201ENST00000525146 880 ntBASIC3.3□□□□□ -1.88
ZNF560Q96MR9 AC022690.1-201ENST00000526681 550 ntBASIC3.3□□□□□ -1.88
ZNF560Q96MR9 AP000790.2-201ENST00000534388 522 ntTSL 3 BASIC3.3□□□□□ -1.88
ZNF560Q96MR9 AC022509.2-201ENST00000540392 699 ntTSL 3 BASIC3.3□□□□□ -1.88
ZNF560Q96MR9 H3F3AP1-201ENST00000559984 334 ntBASIC3.3□□□□□ -1.88
ZNF560Q96MR9 AP001269.3-201ENST00000588718 329 ntBASIC3.3□□□□□ -1.88
ZNF560Q96MR9 DUXAP3-201ENST00000603616 594 ntBASIC3.3□□□□□ -1.88
Retrieved 100 of 98,524 protein–RNA pairs in 115.1 ms