Protein–RNA interactions for Protein: Q8NEL0

CCDC54, Coiled-coil domain-containing protein 54, humanhuman

Predictions only

Length 328 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC54Q8NEL0 AC005410.1-202ENST00000460347 485 ntBASIC2.65□□□□□ -1.99
CCDC54Q8NEL0 SIDT1-AS1-201ENST00000462180 465 ntTSL 3 BASIC2.65□□□□□ -1.99
CCDC54Q8NEL0 AP001992.1-205ENST00000462248 379 ntBASIC2.65□□□□□ -1.99
CCDC54Q8NEL0 RN7SL863P-201ENST00000462370 296 ntBASIC2.65□□□□□ -1.99
CCDC54Q8NEL0 RN7SL20P-201ENST00000488827 297 ntBASIC2.65□□□□□ -1.99
CCDC54Q8NEL0 AC022118.1-201ENST00000512352 547 ntTSL 5 BASIC2.65□□□□□ -1.99
CCDC54Q8NEL0 RN7SKP157-201ENST00000516174 282 ntBASIC2.65□□□□□ -1.99
CCDC54Q8NEL0 RNA5SP76-201ENST00000516277 87 ntBASIC2.65□□□□□ -1.99
CCDC54Q8NEL0 AC136777.1-201ENST00000517765 369 ntTSL 4 BASIC2.65□□□□□ -1.99
CCDC54Q8NEL0 AC023632.4-201ENST00000517783 191 ntBASIC2.65□□□□□ -1.99
CCDC54Q8NEL0 AC102945.1-201ENST00000522640 407 ntTSL 2 BASIC2.65□□□□□ -1.99
CCDC54Q8NEL0 NECAB1-205ENST00000522820 811 ntTSL 2 BASIC2.65□□□□□ -1.99
CCDC54Q8NEL0 AP001372.4-201ENST00000524889 472 ntBASIC2.65□□□□□ -1.99
CCDC54Q8NEL0 AP001646.3-201ENST00000526305 446 ntTSL 2 BASIC2.65□□□□□ -1.99
CCDC54Q8NEL0 AC087311.2-201ENST00000549660 320 ntTSL 4 BASIC2.65□□□□□ -1.99
CCDC54Q8NEL0 AL355773.1-201ENST00000554458 459 ntTSL 3 BASIC2.65□□□□□ -1.99
CCDC54Q8NEL0 AC004943.1-202ENST00000558618 503 ntTSL 3 BASIC2.65□□□□□ -1.99
CCDC54Q8NEL0 HSPE1P3-201ENST00000559254 309 ntBASIC2.65□□□□□ -1.99
CCDC54Q8NEL0 LINC02126-202ENST00000563754 750 ntTSL 1 (best) BASIC2.65□□□□□ -1.99
CCDC54Q8NEL0 RN7SL339P-201ENST00000580597 296 ntBASIC2.65□□□□□ -1.99
CCDC54Q8NEL0 TTN-AS1-213ENST00000584485 838 ntTSL 3 BASIC2.65□□□□□ -1.99
CCDC54Q8NEL0 AC010127.1-205ENST00000595268 567 ntTSL 5 BASIC2.65□□□□□ -1.99
CCDC54Q8NEL0 ACYP2-208ENST00000606865 674 ntTSL 5 BASIC2.65□□□□□ -1.99
CCDC54Q8NEL0 AC069234.5-201ENST00000611056 416 ntBASIC2.65□□□□□ -1.99
CCDC54Q8NEL0 AC004009.2-201ENST00000623016 728 ntBASIC2.65□□□□□ -1.99
CCDC54Q8NEL0 TMEM59-205ENST00000371348 1911 ntTSL 1 (best) BASIC2.65□□□□□ -1.99
CCDC54Q8NEL0 LINC01376-202ENST00000424895 1949 ntTSL 2 BASIC2.64□□□□□ -1.99
CCDC54Q8NEL0 PRKACB-207ENST00000394838 4294 ntTSL 5 BASIC2.64□□□□□ -1.99
CCDC54Q8NEL0 RNU6-560P-201ENST00000364007 108 ntBASIC2.64□□□□□ -1.99
CCDC54Q8NEL0 SNORD56.5-201ENST00000364281 72 ntBASIC2.64□□□□□ -1.99
CCDC54Q8NEL0 SNORA62.3-201ENST00000365110 153 ntBASIC2.64□□□□□ -1.99
CCDC54Q8NEL0 RPL23AP29-201ENST00000397284 453 ntBASIC2.64□□□□□ -1.99
CCDC54Q8NEL0 AL357075.1-201ENST00000404107 726 ntBASIC2.64□□□□□ -1.99
CCDC54Q8NEL0 RN7SKP220-201ENST00000410611 288 ntBASIC2.64□□□□□ -1.99
CCDC54Q8NEL0 AC010731.3-201ENST00000415029 566 ntTSL 4 BASIC2.64□□□□□ -1.99
CCDC54Q8NEL0 AC007271.1-201ENST00000428188 382 ntTSL 3 BASIC2.64□□□□□ -1.99
CCDC54Q8NEL0 AC097713.2-201ENST00000430199 356 ntBASIC2.64□□□□□ -1.99
CCDC54Q8NEL0 AL645638.1-201ENST00000440519 361 ntBASIC2.64□□□□□ -1.99
CCDC54Q8NEL0 EEF1A1P39-201ENST00000440791 250 ntBASIC2.64□□□□□ -1.99
CCDC54Q8NEL0 RPL39P40-201ENST00000445481 146 ntBASIC2.64□□□□□ -1.99
CCDC54Q8NEL0 AL513412.1-201ENST00000445708 553 ntTSL 4 BASIC2.64□□□□□ -1.99
CCDC54Q8NEL0 AC007557.1-201ENST00000451711 541 ntTSL 2 BASIC2.64□□□□□ -1.99
CCDC54Q8NEL0 AL583803.1-201ENST00000454262 334 ntTSL 3 BASIC2.64□□□□□ -1.99
CCDC54Q8NEL0 Z82190.1-201ENST00000454534 490 ntBASIC2.64□□□□□ -1.99
CCDC54Q8NEL0 RPS29P12-201ENST00000460178 152 ntBASIC2.64□□□□□ -1.99
CCDC54Q8NEL0 AC090453.1-201ENST00000495560 436 ntBASIC2.64□□□□□ -1.99
CCDC54Q8NEL0 AC104304.1-201ENST00000505797 291 ntAPPRIS P1 TSL 3 BASIC2.64□□□□□ -1.99
CCDC54Q8NEL0 AC093895.1-203ENST00000506814 591 ntTSL 5 BASIC2.64□□□□□ -1.99
CCDC54Q8NEL0 LINC02241-202ENST00000512688 467 ntTSL 3 BASIC2.64□□□□□ -1.99
CCDC54Q8NEL0 LINC02103-201ENST00000512849 523 ntTSL 5 BASIC2.64□□□□□ -1.99
CCDC54Q8NEL0 DUXAP2-201ENST00000519198 589 ntBASIC2.64□□□□□ -1.99
CCDC54Q8NEL0 AC013509.1-201ENST00000524269 339 ntTSL 3 BASIC2.64□□□□□ -1.99
CCDC54Q8NEL0 LINC00301-204ENST00000532591 470 ntTSL 2 BASIC2.64□□□□□ -1.99
CCDC54Q8NEL0 AC024224.1-201ENST00000538284 609 ntBASIC2.64□□□□□ -1.99
CCDC54Q8NEL0 AC018630.1-201ENST00000541376 925 ntBASIC2.64□□□□□ -1.99
CCDC54Q8NEL0 AC011773.2-201ENST00000551479 285 ntTSL 5 BASIC2.64□□□□□ -1.99
CCDC54Q8NEL0 AL049838.1-201ENST00000563647 981 ntBASIC2.64□□□□□ -1.99
CCDC54Q8NEL0 AC079411.1-201ENST00000565441 795 ntTSL 1 (best) BASIC2.64□□□□□ -1.99
CCDC54Q8NEL0 MIR4509-3-201ENST00000578671 94 ntBASIC2.64□□□□□ -1.99
CCDC54Q8NEL0 MIR4509-2-201ENST00000583920 94 ntBASIC2.64□□□□□ -1.99
CCDC54Q8NEL0 AP001269.3-201ENST00000588718 329 ntBASIC2.64□□□□□ -1.99
CCDC54Q8NEL0 AL390838.2-201ENST00000602394 274 ntBASIC2.64□□□□□ -1.99
CCDC54Q8NEL0 AL355812.1-201ENST00000603215 216 ntBASIC2.64□□□□□ -1.99
CCDC54Q8NEL0 DUXAP3-201ENST00000603616 594 ntBASIC2.64□□□□□ -1.99
CCDC54Q8NEL0 AC106791.2-201ENST00000604680 391 ntBASIC2.64□□□□□ -1.99
CCDC54Q8NEL0 AC144521.1-201ENST00000607148 956 ntBASIC2.64□□□□□ -1.99
CCDC54Q8NEL0 AL359198.2-201ENST00000611836 194 ntBASIC2.64□□□□□ -1.99
CCDC54Q8NEL0 MIR4509-1-201ENST00000618224 94 ntBASIC2.64□□□□□ -1.99
CCDC54Q8NEL0 AC138393.3-201ENST00000618397 573 ntTSL 3 BASIC2.64□□□□□ -1.99
CCDC54Q8NEL0 AC010338.1-201ENST00000621823 717 ntBASIC2.64□□□□□ -1.99
CCDC54Q8NEL0 AC018692.3-201ENST00000623929 123 ntBASIC2.64□□□□□ -1.99
CCDC54Q8NEL0 AC092813.1-201ENST00000635455 969 ntTSL 5 BASIC2.64□□□□□ -1.99
CCDC54Q8NEL0 FAM214A-204ENST00000546305 3697 ntTSL 2 BASIC2.64□□□□□ -1.99
CCDC54Q8NEL0 CDR1-202ENST00000625883 1485 ntBASIC2.64□□□□□ -1.99
CCDC54Q8NEL0 TPTE2-202ENST00000382978 1677 ntTSL 5 BASIC2.63□□□□□ -1.99
CCDC54Q8NEL0 CNBD1-202ENST00000518476 1594 ntAPPRIS P2 TSL 1 (best) BASIC2.63□□□□□ -1.99
CCDC54Q8NEL0 VTRNA1-1-201ENST00000363120 99 ntBASIC2.63□□□□□ -1.99
CCDC54Q8NEL0 RNU6-1155P-201ENST00000363554 107 ntBASIC2.63□□□□□ -1.99
CCDC54Q8NEL0 RNU6-799P-201ENST00000363567 107 ntBASIC2.63□□□□□ -1.99
CCDC54Q8NEL0 RNU6-621P-201ENST00000364752 109 ntBASIC2.63□□□□□ -1.99
CCDC54Q8NEL0 MIR135A2-201ENST00000384854 100 ntBASIC2.63□□□□□ -1.99
CCDC54Q8NEL0 MTND4P13-201ENST00000402078 1023 ntBASIC2.63□□□□□ -1.99
CCDC54Q8NEL0 U3.42-201ENST00000408746 214 ntBASIC2.63□□□□□ -1.99
CCDC54Q8NEL0 SUMO1-205ENST00000409205 534 ntTSL 2 BASIC2.63□□□□□ -1.99
CCDC54Q8NEL0 MOB4-205ENST00000409916 829 ntTSL 3 BASIC2.63□□□□□ -1.99
CCDC54Q8NEL0 AC063979.1-201ENST00000415539 377 ntBASIC2.63□□□□□ -1.99
CCDC54Q8NEL0 AL161909.2-201ENST00000417577 409 ntTSL 5 BASIC2.63□□□□□ -1.99
CCDC54Q8NEL0 AL353678.1-201ENST00000422735 741 ntBASIC2.63□□□□□ -1.99
CCDC54Q8NEL0 AL049637.1-201ENST00000424664 503 ntTSL 5 BASIC2.63□□□□□ -1.99
CCDC54Q8NEL0 AC092648.1-201ENST00000425870 423 ntBASIC2.63□□□□□ -1.99
CCDC54Q8NEL0 MTCO1P39-201ENST00000426148 480 ntBASIC2.63□□□□□ -1.99
CCDC54Q8NEL0 AP001117.1-201ENST00000428205 609 ntTSL 2 BASIC2.63□□□□□ -1.99
CCDC54Q8NEL0 LINC00457-201ENST00000428706 413 ntTSL 3 BASIC2.63□□□□□ -1.99
CCDC54Q8NEL0 ZFY-AS1-202ENST00000431145 419 ntTSL 3 BASIC2.63□□□□□ -1.99
CCDC54Q8NEL0 AL159987.2-201ENST00000432754 307 ntBASIC2.63□□□□□ -1.99
CCDC54Q8NEL0 Z95327.1-201ENST00000446082 482 ntBASIC2.63□□□□□ -1.99
CCDC54Q8NEL0 AC016696.1-201ENST00000446949 318 ntBASIC2.63□□□□□ -1.99
CCDC54Q8NEL0 AC093422.2-201ENST00000452599 686 ntTSL 2 BASIC2.63□□□□□ -1.99
CCDC54Q8NEL0 AC098820.1-201ENST00000453157 512 ntTSL 2 BASIC2.63□□□□□ -1.99
CCDC54Q8NEL0 USP9YP25-201ENST00000457708 443 ntBASIC2.63□□□□□ -1.99
Retrieved 100 of 98,524 protein–RNA pairs in 86.9 ms