Protein–RNA interactions for Protein: P49916

LIG3, DNA ligase 3, humanhuman

Predictions only

Length 1,009 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3P49916 RNU6-189P-201ENST00000516120 101 ntBASIC5.2□□□□□ -1.58
LIG3P49916 RNU6-566P-201ENST00000516790 107 ntBASIC5.2□□□□□ -1.58
LIG3P49916 STX3-204ENST00000530221 534 ntTSL 5 BASIC5.2□□□□□ -1.58
LIG3P49916 AC007527.1-201ENST00000535528 313 ntTSL 2 BASIC5.2□□□□□ -1.58
LIG3P49916 MFAP5-211ENST00000540087 492 ntTSL 1 (best) BASIC5.2□□□□□ -1.58
LIG3P49916 OR11H5P-201ENST00000554039 926 ntBASIC5.2□□□□□ -1.58
LIG3P49916 TRAV30-201ENST00000557168 337 ntAPPRIS P1 BASIC5.2□□□□□ -1.58
LIG3P49916 AC066612.1-202ENST00000561094 518 ntTSL 5 BASIC5.2□□□□□ -1.58
LIG3P49916 AC073878.2-201ENST00000565449 385 ntTSL 3 BASIC5.2□□□□□ -1.58
LIG3P49916 MIR4790-201ENST00000577799 79 ntBASIC5.2□□□□□ -1.58
LIG3P49916 AC006270.2-201ENST00000578523 652 ntBASIC5.2□□□□□ -1.58
LIG3P49916 RN7SL708P-201ENST00000580952 299 ntBASIC5.2□□□□□ -1.58
LIG3P49916 AC011447.4-201ENST00000587562 111 ntBASIC5.2□□□□□ -1.58
LIG3P49916 AC011626.1-201ENST00000604710 562 ntBASIC5.2□□□□□ -1.58
LIG3P49916 AL080274.1-201ENST00000605565 220 ntBASIC5.2□□□□□ -1.58
LIG3P49916 AC116312.1-201ENST00000606841 314 ntBASIC5.2□□□□□ -1.58
LIG3P49916 AL355802.3-201ENST00000607571 545 ntBASIC5.2□□□□□ -1.58
LIG3P49916 U73479.1-201ENST00000618062 168 ntBASIC5.2□□□□□ -1.58
LIG3P49916 AC110801.1-201ENST00000623590 212 ntBASIC5.2□□□□□ -1.58
LIG3P49916 WEE2-201ENST00000397541 3061 ntAPPRIS P1 TSL 1 (best) BASIC5.2□□□□□ -1.58
LIG3P49916 POLK-217ENST00000515295 1438 ntTSL 1 (best) BASIC5.2□□□□□ -1.58
LIG3P49916 ING3-201ENST00000315870 3777 ntAPPRIS P1 TSL 1 (best) BASIC5.2□□□□□ -1.58
LIG3P49916 SPAG5-AS1-202ENST00000424210 1551 ntTSL 2 BASIC5.2□□□□□ -1.58
LIG3P49916 APAF1-208ENST00000549007 3492 ntTSL 1 (best) BASIC5.2□□□□□ -1.58
LIG3P49916 AC010132.3-201ENST00000442788 2430 ntAPPRIS P5 TSL 5 BASIC5.19□□□□□ -1.58
LIG3P49916 AC099792.1-203ENST00000634701 2183 ntTSL 5 BASIC5.19□□□□□ -1.58
LIG3P49916 FTX-210ENST00000603037 8347 ntTSL 5 BASIC5.19□□□□□ -1.58
LIG3P49916 SPAM1-202ENST00000340011 2349 ntAPPRIS P4 TSL 1 (best) BASIC5.19□□□□□ -1.58
LIG3P49916 C15orf41-212ENST00000567389 2618 ntTSL 1 (best) BASIC5.19□□□□□ -1.58
LIG3P49916 ZNF468-203ENST00000595646 4407 ntAPPRIS P1 TSL 1 (best) BASIC5.19□□□□□ -1.58
LIG3P49916 TMEM154-201ENST00000304385 10698 ntAPPRIS P2 TSL 1 (best) BASIC5.19□□□□□ -1.58
LIG3P49916 ZRANB3-201ENST00000264159 4046 ntAPPRIS P3 TSL 1 (best) BASIC5.19□□□□□ -1.58
LIG3P49916 GHR-202ENST00000357703 4316 ntTSL 5 BASIC5.19□□□□□ -1.58
LIG3P49916 ZFX-203ENST00000379177 7558 ntAPPRIS P1 TSL 1 (best) BASIC5.19□□□□□ -1.58
LIG3P49916 AC106895.2-201ENST00000511291 1824 ntTSL 3 BASIC5.19□□□□□ -1.58
LIG3P49916 LINC01847-201ENST00000522627 5607 ntTSL 1 (best) BASIC5.19□□□□□ -1.58
LIG3P49916 RNA5SP305-201ENST00000362665 119 ntBASIC5.19□□□□□ -1.58
LIG3P49916 SNORA58B-201ENST00000364259 136 ntBASIC5.19□□□□□ -1.58
LIG3P49916 CRP-202ENST00000368110 667 ntTSL 3 BASIC5.19□□□□□ -1.58
LIG3P49916 Y_RNA.445-201ENST00000384168 102 ntBASIC5.19□□□□□ -1.58
LIG3P49916 MIR589-201ENST00000385238 99 ntBASIC5.19□□□□□ -1.58
LIG3P49916 SNORD96B-201ENST00000386148 79 ntBASIC5.19□□□□□ -1.58
LIG3P49916 TRAV16-201ENST00000390444 329 ntAPPRIS P1 BASIC5.19□□□□□ -1.58
LIG3P49916 RPL5P18-201ENST00000406671 891 ntBASIC5.19□□□□□ -1.58
LIG3P49916 RNU4-78P-201ENST00000410940 126 ntBASIC5.19□□□□□ -1.58
LIG3P49916 RNU6-370P-201ENST00000411008 104 ntBASIC5.19□□□□□ -1.58
LIG3P49916 LINC02528-201ENST00000417800 381 ntTSL 2 BASIC5.19□□□□□ -1.58
LIG3P49916 AC093162.1-201ENST00000419682 124 ntBASIC5.19□□□□□ -1.58
LIG3P49916 AL022396.1-201ENST00000427011 386 ntTSL 3 BASIC5.19□□□□□ -1.58
LIG3P49916 AC004875.1-201ENST00000432702 378 ntTSL 3 BASIC5.19□□□□□ -1.58
LIG3P49916 MRPS18BP2-201ENST00000434310 759 ntBASIC5.19□□□□□ -1.58
LIG3P49916 AC073850.1-201ENST00000449243 255 ntBASIC5.19□□□□□ -1.58
LIG3P49916 LINC01753-201ENST00000458145 631 ntTSL 3 BASIC5.19□□□□□ -1.58
LIG3P49916 RNU7-152P-201ENST00000458982 64 ntBASIC5.19□□□□□ -1.58
LIG3P49916 SCARNA18-201ENST00000459004 134 ntBASIC5.19□□□□□ -1.58
LIG3P49916 RPL7AP28-201ENST00000464513 571 ntBASIC5.19□□□□□ -1.58
LIG3P49916 RN7SL329P-201ENST00000467740 299 ntBASIC5.19□□□□□ -1.58
LIG3P49916 TRBV1-201ENST00000476502 284 ntBASIC5.19□□□□□ -1.58
LIG3P49916 AC093270.2-201ENST00000486157 792 ntBASIC5.19□□□□□ -1.58
LIG3P49916 ATP1B3-AS1-201ENST00000492725 376 ntTSL 5 BASIC5.19□□□□□ -1.58
LIG3P49916 AC005699.1-205ENST00000510639 427 ntTSL 2 BASIC5.19□□□□□ -1.58
LIG3P49916 AC004054.1-201ENST00000515111 270 ntTSL 3 BASIC5.19□□□□□ -1.58
LIG3P49916 RNU6-256P-201ENST00000516747 97 ntBASIC5.19□□□□□ -1.58
LIG3P49916 RNU6-685P-201ENST00000517088 95 ntBASIC5.19□□□□□ -1.58
LIG3P49916 AP000755.2-201ENST00000526777 571 ntTSL 5 BASIC5.19□□□□□ -1.58
LIG3P49916 AC140847.1-201ENST00000538025 534 ntTSL 4 BASIC5.19□□□□□ -1.58
LIG3P49916 AC092490.3-201ENST00000545370 572 ntBASIC5.19□□□□□ -1.58
LIG3P49916 AL132780.1-202ENST00000548322 591 ntTSL 4 BASIC5.19□□□□□ -1.58
LIG3P49916 AL163153.1-201ENST00000554223 283 ntBASIC5.19□□□□□ -1.58
LIG3P49916 AC106782.4-201ENST00000568264 210 ntBASIC5.19□□□□□ -1.58
LIG3P49916 AC007922.3-201ENST00000581648 543 ntTSL 3 BASIC5.19□□□□□ -1.58
LIG3P49916 MIR4443-201ENST00000585052 53 ntBASIC5.19□□□□□ -1.58
LIG3P49916 LINC02210-208ENST00000585118 546 ntTSL 1 (best) BASIC5.19□□□□□ -1.58
LIG3P49916 AF038458.1-201ENST00000588406 262 ntBASIC5.19□□□□□ -1.58
LIG3P49916 AC124303.1-201ENST00000605703 360 ntBASIC5.19□□□□□ -1.58
LIG3P49916 AC040896.1-201ENST00000613819 479 ntBASIC5.19□□□□□ -1.58
LIG3P49916 LINC01378-205ENST00000615833 158 ntTSL 5 BASIC5.19□□□□□ -1.58
LIG3P49916 WFDC11-203ENST00000618797 561 ntAPPRIS P1 TSL 5 BASIC5.19□□□□□ -1.58
LIG3P49916 AC010976.1-210ENST00000630740 1005 ntTSL 5 BASIC5.19□□□□□ -1.58
LIG3P49916 PTPRD-201ENST00000355233 8251 ntTSL 1 (best) BASIC5.19□□□□□ -1.58
LIG3P49916 DOCK7-211ENST00000634264 6303 ntAPPRIS ALT2 TSL 5 BASIC5.19□□□□□ -1.58
LIG3P49916 AC092821.1-201ENST00000640129 4180 ntAPPRIS P1 TSL 5 BASIC5.19□□□□□ -1.58
LIG3P49916 PCDH9-201ENST00000377861 28227 ntTSL 1 (best) BASIC5.19□□□□□ -1.58
LIG3P49916 FAM133A-202ENST00000332647 3159 ntAPPRIS P1 TSL 2 BASIC5.19□□□□□ -1.58
LIG3P49916 BDNF-AS-202ENST00000499568 2039 ntTSL 1 (best) BASIC5.19□□□□□ -1.58
LIG3P49916 WDFY3-201ENST00000295888 14247 ntAPPRIS P1 TSL 1 (best) BASIC5.19□□□□□ -1.58
LIG3P49916 AC004803.1-201ENST00000503602 3207 ntTSL 1 (best) BASIC5.19□□□□□ -1.58
LIG3P49916 RMDN2-204ENST00000406384 1932 ntAPPRIS P1 TSL 1 (best) BASIC5.19□□□□□ -1.58
LIG3P49916 OR56A1-202ENST00000641423 6096 ntAPPRIS P1 BASIC5.19□□□□□ -1.58
LIG3P49916 EMSY-204ENST00000524490 4015 ntTSL 2 BASIC5.19□□□□□ -1.58
LIG3P49916 FOXP2-220ENST00000634411 4065 ntTSL 5 BASIC5.18□□□□□ -1.58
LIG3P49916 ARHGEF12-202ENST00000397843 9660 ntAPPRIS P1 TSL 1 (best) BASIC5.18□□□□□ -1.58
LIG3P49916 GTDC1-202ENST00000344850 2607 ntAPPRIS P1 TSL 5 BASIC5.18□□□□□ -1.58
LIG3P49916 TET2-202ENST00000305737 9233 ntTSL 1 (best) BASIC5.18□□□□□ -1.58
LIG3P49916 AC139713.2-215ENST00000641428 5037 ntBASIC5.18□□□□□ -1.58
LIG3P49916 OR10K1-203ENST00000641432 3775 ntAPPRIS P1 BASIC5.18□□□□□ -1.58
LIG3P49916 CENPE-208ENST00000611174 8260 ntTSL 5 BASIC5.18□□□□□ -1.58
LIG3P49916 OR10A5-201ENST00000299454 1054 ntAPPRIS P1 BASIC5.18□□□□□ -1.58
LIG3P49916 MDM4-202ENST00000367180 547 ntTSL 3 BASIC5.18□□□□□ -1.58
LIG3P49916 SMIM11P1-201ENST00000369586 178 ntBASIC5.18□□□□□ -1.58
Retrieved 100 of 98,524 protein–RNA pairs in 112.9 ms