Protein–RNA interactions for Protein: O95343

SIX3, Homeobox protein SIX3, humanhuman

Predicted RBP Predictions only

Length 332 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX3O95343 AL354943.1-201ENST00000572103 781 ntBASIC3.4□□□□□ -1.87
SIX3O95343 AC006116.8-203ENST00000587448 465 ntTSL 3 BASIC3.4□□□□□ -1.87
SIX3O95343 LINC02109-204ENST00000602801 563 ntTSL 4 BASIC3.4□□□□□ -1.87
SIX3O95343 UGT2B10-201ENST00000265403 1931 ntAPPRIS P1 TSL 1 (best) BASIC3.4□□□□□ -1.87
SIX3O95343 USP9Y-201ENST00000338981 10036 ntAPPRIS P1 TSL 1 (best) BASIC3.4□□□□□ -1.87
SIX3O95343 MBNL1-218ENST00000485910 4257 ntTSL 1 (best) BASIC3.4□□□□□ -1.87
SIX3O95343 RBM39-201ENST00000253363 2488 ntAPPRIS P4 TSL 1 (best) BASIC3.39□□□□□ -1.87
SIX3O95343 SLC27A2-203ENST00000544960 2025 ntTSL 2 BASIC3.39□□□□□ -1.87
SIX3O95343 HNRNPC-203ENST00000430246 4501 ntAPPRIS P2 TSL 1 (best) BASIC3.39□□□□□ -1.87
SIX3O95343 NR3C1-212ENST00000504572 3389 ntAPPRIS ALT1 TSL 1 (best) BASIC3.39□□□□□ -1.87
SIX3O95343 LINC01376-202ENST00000424895 1949 ntTSL 2 BASIC3.39□□□□□ -1.87
SIX3O95343 CRP-203ENST00000368111 512 ntTSL 3 BASIC3.39□□□□□ -1.87
SIX3O95343 TRAV7-201ENST00000390429 337 ntAPPRIS P1 BASIC3.39□□□□□ -1.87
SIX3O95343 RNU1-101P-201ENST00000391171 127 ntBASIC3.39□□□□□ -1.87
SIX3O95343 RN7SKP285-201ENST00000410137 318 ntBASIC3.39□□□□□ -1.87
SIX3O95343 RNU6-55P-201ENST00000411092 107 ntBASIC3.39□□□□□ -1.87
SIX3O95343 RNU6-954P-201ENST00000411355 107 ntBASIC3.39□□□□□ -1.87
SIX3O95343 MTCO1P17-201ENST00000411522 491 ntBASIC3.39□□□□□ -1.87
SIX3O95343 RAB9AP3-201ENST00000412737 573 ntBASIC3.39□□□□□ -1.87
SIX3O95343 RPS24P7-201ENST00000416921 246 ntBASIC3.39□□□□□ -1.87
SIX3O95343 AC106873.1-201ENST00000420664 459 ntTSL 3 BASIC3.39□□□□□ -1.87
SIX3O95343 AC090952.1-201ENST00000424242 446 ntTSL 3 BASIC3.39□□□□□ -1.87
SIX3O95343 BBS9-205ENST00000425508 1252 ntTSL 1 (best) BASIC3.39□□□□□ -1.87
SIX3O95343 LINC01674-201ENST00000427446 504 ntTSL 3 BASIC3.39□□□□□ -1.87
SIX3O95343 AL161640.1-201ENST00000429507 390 ntTSL 2 BASIC3.39□□□□□ -1.87
SIX3O95343 AC092598.1-201ENST00000431708 797 ntTSL 3 BASIC3.39□□□□□ -1.87
SIX3O95343 AL512658.1-202ENST00000433486 400 ntTSL 3 BASIC3.39□□□□□ -1.87
SIX3O95343 GSAP-208ENST00000441833 737 ntTSL 1 (best) BASIC3.39□□□□□ -1.87
SIX3O95343 NOTCH2P1-201ENST00000443481 624 ntBASIC3.39□□□□□ -1.87
SIX3O95343 AP1S3-208ENST00000446015 499 ntAPPRIS ALT1 TSL 1 (best) BASIC3.39□□□□□ -1.87
SIX3O95343 AL357793.2-201ENST00000447056 850 ntTSL 3 BASIC3.39□□□□□ -1.87
SIX3O95343 RAB9AP1-201ENST00000449393 573 ntBASIC3.39□□□□□ -1.87
SIX3O95343 RPL31P60-201ENST00000478450 367 ntBASIC3.39□□□□□ -1.87
SIX3O95343 RPL30P14-201ENST00000482744 348 ntBASIC3.39□□□□□ -1.87
SIX3O95343 HMGB1P36-201ENST00000487709 576 ntBASIC3.39□□□□□ -1.87
SIX3O95343 HMGN1P11-201ENST00000508668 303 ntBASIC3.39□□□□□ -1.87
SIX3O95343 ERAP2-205ENST00000510309 1275 ntTSL 1 (best) BASIC3.39□□□□□ -1.87
SIX3O95343 AC093879.2-201ENST00000513645 427 ntTSL 3 BASIC3.39□□□□□ -1.87
SIX3O95343 AC110760.3-202ENST00000515177 371 ntBASIC3.39□□□□□ -1.87
SIX3O95343 SNORA70.19-201ENST00000516717 90 ntBASIC3.39□□□□□ -1.87
SIX3O95343 RNU6-711P-201ENST00000517255 106 ntBASIC3.39□□□□□ -1.87
SIX3O95343 UBTFL10-201ENST00000528532 562 ntBASIC3.39□□□□□ -1.87
SIX3O95343 AP000756.1-201ENST00000532606 679 ntTSL 2 BASIC3.39□□□□□ -1.87
SIX3O95343 AC023050.2-201ENST00000544968 387 ntBASIC3.39□□□□□ -1.87
SIX3O95343 LINC01481-201ENST00000552998 629 ntTSL 2 BASIC3.39□□□□□ -1.87
SIX3O95343 FAM96A-206ENST00000559950 561 ntTSL 2 BASIC3.39□□□□□ -1.87
SIX3O95343 AC099793.1-201ENST00000567538 285 ntTSL 3 BASIC3.39□□□□□ -1.87
SIX3O95343 AP005059.2-201ENST00000577527 578 ntTSL 3 BASIC3.39□□□□□ -1.87
SIX3O95343 AC022022.2-201ENST00000602989 360 ntBASIC3.39□□□□□ -1.87
SIX3O95343 AC106791.2-201ENST00000604680 391 ntBASIC3.39□□□□□ -1.87
SIX3O95343 AC083798.2-205ENST00000608015 575 ntTSL 5 BASIC3.39□□□□□ -1.87
SIX3O95343 AC004067.1-201ENST00000608733 700 ntBASIC3.39□□□□□ -1.87
SIX3O95343 ADPRM-204ENST00000609540 1138 ntTSL 5 BASIC3.39□□□□□ -1.87
SIX3O95343 AL121772.2-201ENST00000614331 297 ntBASIC3.39□□□□□ -1.87
SIX3O95343 AL356596.1-201ENST00000624230 379 ntBASIC3.39□□□□□ -1.87
SIX3O95343 AC079597.1-201ENST00000624306 508 ntBASIC3.39□□□□□ -1.87
SIX3O95343 SYNE1-201ENST00000341594 26584 ntAPPRIS ALT2 TSL 5 BASIC3.39□□□□□ -1.87
SIX3O95343 AC090740.1-201ENST00000623193 2262 ntBASIC3.39□□□□□ -1.87
SIX3O95343 DNAH12-201ENST00000311202 1555 ntTSL 2 BASIC3.38□□□□□ -1.87
SIX3O95343 UBE3A-202ENST00000397954 2873 ntTSL 5 BASIC3.38□□□□□ -1.87
SIX3O95343 DCUN1D1-201ENST00000292782 7954 ntAPPRIS P1 TSL 1 (best) BASIC3.38□□□□□ -1.87
SIX3O95343 LUZP2-208ENST00000620308 4981 ntTSL 5 BASIC3.38□□□□□ -1.87
SIX3O95343 AC021755.1-201ENST00000559747 1447 ntBASIC3.38□□□□□ -1.87
SIX3O95343 TLR10-206ENST00000508334 2616 ntAPPRIS P1 TSL 1 (best) BASIC3.38□□□□□ -1.87
SIX3O95343 RNU6-777P-201ENST00000364265 104 ntBASIC3.38□□□□□ -1.87
SIX3O95343 RNU6-359P-201ENST00000365466 108 ntBASIC3.38□□□□□ -1.87
SIX3O95343 OR5V1-215ENST00000377154 1266 ntAPPRIS P1 BASIC3.38□□□□□ -1.87
SIX3O95343 Z93403.1-201ENST00000411879 895 ntTSL 5 BASIC3.38□□□□□ -1.87
SIX3O95343 AC009505.1-201ENST00000413151 424 ntTSL 2 BASIC3.38□□□□□ -1.87
SIX3O95343 RPL22P18-201ENST00000417197 377 ntBASIC3.38□□□□□ -1.87
SIX3O95343 LINC01427-201ENST00000420928 504 ntTSL 3 BASIC3.38□□□□□ -1.87
SIX3O95343 AC073641.1-201ENST00000425192 429 ntTSL 3 BASIC3.38□□□□□ -1.87
SIX3O95343 MTATP6P4-201ENST00000427725 675 ntBASIC3.38□□□□□ -1.87
SIX3O95343 AP000907.1-201ENST00000428428 510 ntBASIC3.38□□□□□ -1.87
SIX3O95343 C21orf91-OT1-202ENST00000430815 717 ntTSL 5 BASIC3.38□□□□□ -1.87
SIX3O95343 AC091286.1-201ENST00000431233 461 ntBASIC3.38□□□□□ -1.87
SIX3O95343 MTND1P32-201ENST00000433043 938 ntBASIC3.38□□□□□ -1.87
SIX3O95343 AC007003.1-202ENST00000439318 349 ntTSL 5 BASIC3.38□□□□□ -1.87
SIX3O95343 CHODL-AS1-201ENST00000447175 1117 ntTSL 2 BASIC3.38□□□□□ -1.87
SIX3O95343 PRDX3P3-201ENST00000447765 522 ntBASIC3.38□□□□□ -1.87
SIX3O95343 SUN3-208ENST00000453192 801 ntTSL 5 BASIC3.38□□□□□ -1.87
SIX3O95343 LINC01546-201ENST00000457435 674 ntTSL 2 BASIC3.38□□□□□ -1.87
SIX3O95343 RPS4XP2-201ENST00000458402 793 ntBASIC3.38□□□□□ -1.87
SIX3O95343 AC010401.1-201ENST00000463867 348 ntBASIC3.38□□□□□ -1.87
SIX3O95343 HMGN2P13-201ENST00000476476 274 ntBASIC3.38□□□□□ -1.87
SIX3O95343 AC034222.1-201ENST00000494052 532 ntBASIC3.38□□□□□ -1.87
SIX3O95343 AC016550.2-202ENST00000511940 581 ntTSL 2 BASIC3.38□□□□□ -1.87
SIX3O95343 SNORA3.4-201ENST00000515969 96 ntBASIC3.38□□□□□ -1.87
SIX3O95343 SNORA70.16-201ENST00000516390 95 ntBASIC3.38□□□□□ -1.87
SIX3O95343 RN7SKP265-201ENST00000516448 223 ntBASIC3.38□□□□□ -1.87
SIX3O95343 LINC02329-201ENST00000554753 511 ntTSL 5 BASIC3.38□□□□□ -1.87
SIX3O95343 AC118755.1-201ENST00000572923 195 ntTSL 3 BASIC3.38□□□□□ -1.87
SIX3O95343 MIR3921-201ENST00000577308 85 ntBASIC3.38□□□□□ -1.87
SIX3O95343 AC099811.4-201ENST00000592536 496 ntTSL 2 BASIC3.38□□□□□ -1.87
SIX3O95343 AC024563.1-202ENST00000597533 419 ntTSL 3 BASIC3.38□□□□□ -1.87
SIX3O95343 BNIP3P23-201ENST00000599655 511 ntBASIC3.38□□□□□ -1.87
SIX3O95343 AC010591.1-201ENST00000603941 649 ntBASIC3.38□□□□□ -1.87
SIX3O95343 LINC00343-210ENST00000608220 806 ntTSL 5 BASIC3.38□□□□□ -1.87
SIX3O95343 AC072039.2-201ENST00000608883 439 ntBASIC3.38□□□□□ -1.87
SIX3O95343 DLEU1_2.1-201ENST00000617920 342 ntBASIC3.38□□□□□ -1.87
Retrieved 100 of 98,524 protein–RNA pairs in 103.4 ms