Protein–RNA interactions for Protein: O43196

MSH5, MutS protein homolog 5, humanhuman

Predictions only

Length 834 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5O43196 RNU6-830P-201ENST00000516353 107 ntBASIC9.34□□□□□ -0.91
MSH5O43196 UTP23-205ENST00000520733 369 ntTSL 3 BASIC9.34□□□□□ -0.91
MSH5O43196 IGKV2-29-201ENST00000521304 372 ntBASIC9.34□□□□□ -0.91
MSH5O43196 AC102945.1-201ENST00000522640 407 ntTSL 2 BASIC9.34□□□□□ -0.91
MSH5O43196 SAA3P-201ENST00000533267 365 ntBASIC9.34□□□□□ -0.91
MSH5O43196 GOLGA6L5P-203ENST00000559768 578 ntTSL 4 BASIC9.34□□□□□ -0.91
MSH5O43196 AL450472.3-201ENST00000615578 367 ntBASIC9.34□□□□□ -0.91
MSH5O43196 AC244517.6-202ENST00000623884 566 ntAPPRIS P1 TSL 4 BASIC9.34□□□□□ -0.91
MSH5O43196 CD109-203ENST00000437994 9401 ntAPPRIS ALT1 TSL 1 (best) BASIC9.34□□□□□ -0.91
MSH5O43196 PROX1-AS1-202ENST00000433082 5266 ntTSL 5 BASIC9.34□□□□□ -0.91
MSH5O43196 UTP14C-201ENST00000521776 5529 ntAPPRIS P1 TSL 1 (best) BASIC9.34□□□□□ -0.91
MSH5O43196 TLR4-202ENST00000394487 3908 ntTSL 1 (best) BASIC9.34□□□□□ -0.91
MSH5O43196 TGFBR3-207ENST00000525962 3927 ntAPPRIS P3 TSL 1 (best) BASIC9.34□□□□□ -0.91
MSH5O43196 AL008638.3-201ENST00000623027 5182 ntBASIC9.34□□□□□ -0.91
MSH5O43196 THSD7B-202ENST00000409968 6111 ntAPPRIS P2 TSL 5 BASIC9.34□□□□□ -0.91
MSH5O43196 ZHX3-201ENST00000309060 10030 ntAPPRIS P1 TSL 5 BASIC9.34□□□□□ -0.92
MSH5O43196 MAT2B-201ENST00000280969 2226 ntTSL 1 (best) BASIC9.33□□□□□ -0.92
MSH5O43196 ABCB5-205ENST00000443026 2247 ntTSL 1 (best) BASIC9.33□□□□□ -0.92
MSH5O43196 KDM4C-215ENST00000543771 3332 ntTSL 2 BASIC9.33□□□□□ -0.92
MSH5O43196 LPA-201ENST00000316300 6414 ntAPPRIS P1 TSL 1 (best) BASIC9.33□□□□□ -0.92
MSH5O43196 WDR63-203ENST00000370596 2905 ntAPPRIS ALT2 TSL 5 BASIC9.33□□□□□ -0.92
MSH5O43196 GPRIN3-201ENST00000333209 6260 ntAPPRIS P1 BASIC9.33□□□□□ -0.92
MSH5O43196 CD300E-201ENST00000392619 3501 ntAPPRIS P2 TSL 1 (best) BASIC9.33□□□□□ -0.92
MSH5O43196 PAQR5-201ENST00000340965 4943 ntAPPRIS P1 TSL 1 (best) BASIC9.33□□□□□ -0.92
MSH5O43196 CLPS-201ENST00000259938 526 ntAPPRIS P1 TSL 1 (best) BASIC9.33□□□□□ -0.92
MSH5O43196 Y_RNA.4-201ENST00000362333 112 ntBASIC9.33□□□□□ -0.92
MSH5O43196 THEM7P-201ENST00000419556 672 ntBASIC9.33□□□□□ -0.92
MSH5O43196 RPL30P3-201ENST00000424262 333 ntBASIC9.33□□□□□ -0.92
MSH5O43196 AC118758.1-202ENST00000454719 225 ntBASIC9.33□□□□□ -0.92
MSH5O43196 RN7SL393P-201ENST00000463588 296 ntBASIC9.33□□□□□ -0.92
MSH5O43196 RN7SL170P-201ENST00000487098 295 ntBASIC9.33□□□□□ -0.92
MSH5O43196 AL591122.1-201ENST00000487348 492 ntBASIC9.33□□□□□ -0.92
MSH5O43196 RNU6-1006P-201ENST00000516998 103 ntBASIC9.33□□□□□ -0.92
MSH5O43196 FBXO3-AS1-202ENST00000533046 386 ntTSL 3 BASIC9.33□□□□□ -0.92
MSH5O43196 SNHG1-219ENST00000542112 780 ntTSL 3 BASIC9.33□□□□□ -0.92
MSH5O43196 RPSAP66-201ENST00000592196 606 ntBASIC9.33□□□□□ -0.92
MSH5O43196 CLPS-202ENST00000616014 436 ntTSL 1 (best) BASIC9.33□□□□□ -0.92
MSH5O43196 PLS3-203ENST00000420625 3150 ntTSL 5 BASIC9.33□□□□□ -0.92
MSH5O43196 AC020978.6-201ENST00000571197 3177 ntBASIC9.33□□□□□ -0.92
MSH5O43196 DCP2-201ENST00000389063 8947 ntAPPRIS P1 TSL 1 (best) BASIC9.33□□□□□ -0.92
MSH5O43196 GPRIN3-202ENST00000609438 14244 ntAPPRIS P1 TSL 2 BASIC9.33□□□□□ -0.92
MSH5O43196 SOS2-202ENST00000543680 3960 ntTSL 1 (best) BASIC9.33□□□□□ -0.92
MSH5O43196 NPIPB5-205ENST00000424340 3801 ntAPPRIS P2 TSL 1 (best) BASIC9.33□□□□□ -0.92
MSH5O43196 MTO1-202ENST00000370305 2174 ntTSL 1 (best) BASIC9.33□□□□□ -0.92
MSH5O43196 ZNF542P-202ENST00000467807 3209 ntTSL 1 (best) BASIC9.33□□□□□ -0.92
MSH5O43196 FCHO2-207ENST00000512348 2700 ntTSL 2 BASIC9.33□□□□□ -0.92
MSH5O43196 MEF2C-226ENST00000625674 4343 ntAPPRIS P3 TSL 5 BASIC9.32□□□□□ -0.92
MSH5O43196 EPHA3-201ENST00000336596 5809 ntAPPRIS P1 TSL 1 (best) BASIC9.32□□□□□ -0.92
MSH5O43196 ERBB4-202ENST00000342788 12136 ntAPPRIS P3 TSL 1 (best) BASIC9.32□□□□□ -0.92
MSH5O43196 Y_RNA.607-201ENST00000410597 98 ntBASIC9.32□□□□□ -0.92
MSH5O43196 Y_RNA.620-201ENST00000411009 88 ntBASIC9.32□□□□□ -0.92
MSH5O43196 ATP6V0E1P1-201ENST00000412537 226 ntBASIC9.32□□□□□ -0.92
MSH5O43196 AC022022.1-201ENST00000430304 178 ntBASIC9.32□□□□□ -0.92
MSH5O43196 FUNDC2P2-202ENST00000443452 493 ntBASIC9.32□□□□□ -0.92
MSH5O43196 AC114741.1-201ENST00000504357 464 ntTSL 2 BASIC9.32□□□□□ -0.92
MSH5O43196 RNA5SP54-201ENST00000516951 92 ntBASIC9.32□□□□□ -0.92
MSH5O43196 IGLVVII-41-1-201ENST00000518405 151 ntBASIC9.32□□□□□ -0.92
MSH5O43196 LINC02441-201ENST00000543651 552 ntTSL 4 BASIC9.32□□□□□ -0.92
MSH5O43196 AC027667.1-201ENST00000545814 304 ntBASIC9.32□□□□□ -0.92
MSH5O43196 AL135838.1-201ENST00000556080 235 ntTSL 3 BASIC9.32□□□□□ -0.92
MSH5O43196 IGHV1OR15-3-201ENST00000564926 351 ntBASIC9.32□□□□□ -0.92
MSH5O43196 MIR4470-201ENST00000583453 72 ntBASIC9.32□□□□□ -0.92
MSH5O43196 AC022154.1-203ENST00000594850 493 ntTSL 3 BASIC9.32□□□□□ -0.92
MSH5O43196 YPEL5P2-201ENST00000605553 359 ntBASIC9.32□□□□□ -0.92
MSH5O43196 Z98257.1-202ENST00000431027 2493 ntTSL 5 BASIC9.32□□□□□ -0.92
MSH5O43196 ERMARD-202ENST00000366772 2003 ntTSL 5 BASIC9.32□□□□□ -0.92
MSH5O43196 AP2B1-211ENST00000610402 3204 ntAPPRIS P1 TSL 1 (best) BASIC9.32□□□□□ -0.92
MSH5O43196 IL31RA-202ENST00000354961 2658 ntAPPRIS ALT2 TSL 5 BASIC9.32□□□□□ -0.92
MSH5O43196 EPB41L2-209ENST00000525193 2121 ntTSL 5 BASIC9.32□□□□□ -0.92
MSH5O43196 AKAP7-201ENST00000263050 2238 ntTSL 5 BASIC9.32□□□□□ -0.92
MSH5O43196 DTNA-205ENST00000399113 2232 ntAPPRIS ALT2 TSL 5 BASIC9.32□□□□□ -0.92
MSH5O43196 SLF2-202ENST00000370269 3712 ntAPPRIS ALT2 TSL 1 (best) BASIC9.32□□□□□ -0.92
MSH5O43196 GOSR2-221ENST00000638892 3808 ntTSL 5 BASIC9.32□□□□□ -0.92
MSH5O43196 NUMB-204ENST00000535282 3198 ntAPPRIS ALT1 TSL 5 BASIC9.32□□□□□ -0.92
MSH5O43196 CCDC93-201ENST00000319432 6896 ntAPPRIS ALT1 TSL 5 BASIC9.32□□□□□ -0.92
MSH5O43196 CCDC93-202ENST00000376300 6899 ntAPPRIS P2 TSL 1 (best) BASIC9.32□□□□□ -0.92
MSH5O43196 STK4-202ENST00000372806 6342 ntAPPRIS P1 TSL 1 (best) BASIC9.32□□□□□ -0.92
MSH5O43196 ZNF260-202ENST00000523638 5666 ntAPPRIS P1 TSL 2 BASIC9.31□□□□□ -0.92
MSH5O43196 MRO-201ENST00000256425 5166 ntAPPRIS P1 TSL 1 (best) BASIC9.31□□□□□ -0.92
MSH5O43196 LINC00282-202ENST00000627246 4008 ntAPPRIS P5 TSL 2 BASIC9.31□□□□□ -0.92
MSH5O43196 CFLAR-201ENST00000309955 14672 ntAPPRIS P3 TSL 1 (best) BASIC9.31□□□□□ -0.92
MSH5O43196 STK31-205ENST00000433467 3085 ntTSL 2 BASIC9.31□□□□□ -0.92
MSH5O43196 OR52N1-202ENST00000641645 2545 ntAPPRIS P1 BASIC9.31□□□□□ -0.92
MSH5O43196 CFAP221-203ENST00000413369 2801 ntAPPRIS P1 TSL 5 BASIC9.31□□□□□ -0.92
MSH5O43196 DYRK1A-201ENST00000338785 5498 ntTSL 1 (best) BASIC9.31□□□□□ -0.92
MSH5O43196 MEF2C-254ENST00000637732 3347 ntTSL 5 BASIC9.31□□□□□ -0.92
MSH5O43196 Y_RNA.10-201ENST00000362371 110 ntBASIC9.31□□□□□ -0.92
MSH5O43196 Y_RNA.344-201ENST00000365381 112 ntBASIC9.31□□□□□ -0.92
MSH5O43196 MIR34A-201ENST00000385130 110 ntBASIC9.31□□□□□ -0.92
MSH5O43196 AC005522.1-201ENST00000395416 346 ntBASIC9.31□□□□□ -0.92
MSH5O43196 AC009237.8-201ENST00000445492 379 ntBASIC9.31□□□□□ -0.92
MSH5O43196 TIMM8BP2-201ENST00000445940 251 ntBASIC9.31□□□□□ -0.92
MSH5O43196 AC108463.2-201ENST00000451230 412 ntTSL 5 BASIC9.31□□□□□ -0.92
MSH5O43196 CREM-236ENST00000487763 429 ntTSL 1 (best) BASIC9.31□□□□□ -0.92
MSH5O43196 AC015524.1-201ENST00000491585 472 ntBASIC9.31□□□□□ -0.92
MSH5O43196 AC055733.3-201ENST00000505214 523 ntBASIC9.31□□□□□ -0.92
MSH5O43196 AC008496.1-201ENST00000509131 295 ntBASIC9.31□□□□□ -0.92
MSH5O43196 RNU6-1299P-201ENST00000516316 100 ntBASIC9.31□□□□□ -0.92
MSH5O43196 AC021785.1-201ENST00000520780 453 ntTSL 3 BASIC9.31□□□□□ -0.92
MSH5O43196 AL161757.5-202ENST00000556696 570 ntTSL 3 BASIC9.31□□□□□ -0.92
Retrieved 100 of 98,524 protein–RNA pairs in 147.1 ms