Protein–RNA interactions for Protein: Q9NUW8

TDP1, Tyrosyl-DNA phosphodiesterase 1, humanhuman

Predictions only

Length 608 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TDP1Q9NUW8 MIR4286-201ENST00000580651 93 ntBASIC4.39□□□□□ -1.71
TDP1Q9NUW8 AP001429.1-201ENST00000602568 530 ntBASIC4.39□□□□□ -1.71
TDP1Q9NUW8 AC025449.1-201ENST00000603896 529 ntBASIC4.39□□□□□ -1.71
TDP1Q9NUW8 AC008536.2-201ENST00000607284 349 ntBASIC4.39□□□□□ -1.71
TDP1Q9NUW8 DCAF17-212ENST00000611110 975 ntTSL 1 (best) BASIC4.39□□□□□ -1.71
TDP1Q9NUW8 AL590491.2-201ENST00000614608 499 ntTSL 5 BASIC4.39□□□□□ -1.71
TDP1Q9NUW8 AC008013.2-202ENST00000637965 364 ntBASIC4.39□□□□□ -1.71
TDP1Q9NUW8 EFCAB5-213ENST00000638539 168 ntTSL 5 BASIC4.39□□□□□ -1.71
TDP1Q9NUW8 ADGRL3-203ENST00000506700 4838 ntTSL 5 BASIC4.39□□□□□ -1.71
TDP1Q9NUW8 EIF2S1-202ENST00000466499 2390 ntAPPRIS P1 TSL 1 (best) BASIC4.39□□□□□ -1.71
TDP1Q9NUW8 HIPK3-204ENST00000525975 3668 ntAPPRIS P1 TSL 1 (best) BASIC4.39□□□□□ -1.71
TDP1Q9NUW8 TPRG1-201ENST00000345063 5479 ntAPPRIS P1 TSL 1 (best) BASIC4.39□□□□□ -1.71
TDP1Q9NUW8 RLIMP1-201ENST00000339626 1680 ntBASIC4.38□□□□□ -1.71
TDP1Q9NUW8 RACGAP1-202ENST00000427314 3229 ntAPPRIS P1 TSL 1 (best) BASIC4.38□□□□□ -1.71
TDP1Q9NUW8 ZNF480-202ENST00000335090 2722 ntTSL 3 BASIC4.38□□□□□ -1.71
TDP1Q9NUW8 Z73965.1-201ENST00000623412 2297 ntBASIC4.38□□□□□ -1.71
TDP1Q9NUW8 FAM169A-203ENST00000510496 5810 ntTSL 5 BASIC4.38□□□□□ -1.71
TDP1Q9NUW8 RNA5SP513-201ENST00000364648 118 ntBASIC4.38□□□□□ -1.71
TDP1Q9NUW8 Y_RNA.295-201ENST00000364918 102 ntBASIC4.38□□□□□ -1.71
TDP1Q9NUW8 CRP-202ENST00000368110 667 ntTSL 3 BASIC4.38□□□□□ -1.71
TDP1Q9NUW8 GTSF1L-201ENST00000373003 835 ntAPPRIS P3 BASIC4.38□□□□□ -1.71
TDP1Q9NUW8 GTSF1L-202ENST00000373005 459 ntAPPRIS ALT2 TSL 3 BASIC4.38□□□□□ -1.71
TDP1Q9NUW8 Y_RNA.481-201ENST00000384373 102 ntBASIC4.38□□□□□ -1.71
TDP1Q9NUW8 AC068050.1-201ENST00000394891 380 ntBASIC4.38□□□□□ -1.71
TDP1Q9NUW8 RPS4XP8-201ENST00000402039 771 ntBASIC4.38□□□□□ -1.71
TDP1Q9NUW8 RNU2-62P-201ENST00000410868 191 ntBASIC4.38□□□□□ -1.71
TDP1Q9NUW8 AL109913.1-201ENST00000421173 514 ntBASIC4.38□□□□□ -1.71
TDP1Q9NUW8 MYCBP2-AS1-201ENST00000422231 519 ntTSL 3 BASIC4.38□□□□□ -1.71
TDP1Q9NUW8 AP001117.1-201ENST00000428205 609 ntTSL 2 BASIC4.38□□□□□ -1.71
TDP1Q9NUW8 RPS15AP9-201ENST00000439856 381 ntBASIC4.38□□□□□ -1.71
TDP1Q9NUW8 MTCO3P18-201ENST00000440206 761 ntBASIC4.38□□□□□ -1.71
TDP1Q9NUW8 AC105398.1-201ENST00000446073 402 ntTSL 5 BASIC4.38□□□□□ -1.71
TDP1Q9NUW8 GHRL-209ENST00000446937 217 ntTSL 1 (best) BASIC4.38□□□□□ -1.71
TDP1Q9NUW8 DPPA3P1-201ENST00000448050 469 ntBASIC4.38□□□□□ -1.71
TDP1Q9NUW8 RNU6-420P-201ENST00000458780 107 ntBASIC4.38□□□□□ -1.71
TDP1Q9NUW8 RNA5SP246-201ENST00000458909 119 ntBASIC4.38□□□□□ -1.71
TDP1Q9NUW8 RNU7-59P-201ENST00000459101 61 ntBASIC4.38□□□□□ -1.71
TDP1Q9NUW8 AC093297.2-204ENST00000508945 295 ntTSL 3 BASIC4.38□□□□□ -1.71
TDP1Q9NUW8 AC092673.1-201ENST00000510203 428 ntTSL 3 BASIC4.38□□□□□ -1.71
TDP1Q9NUW8 SCARNA24.1-201ENST00000516465 137 ntBASIC4.38□□□□□ -1.71
TDP1Q9NUW8 HMGB1P19-201ENST00000517578 577 ntBASIC4.38□□□□□ -1.71
TDP1Q9NUW8 AC008694.2-201ENST00000517591 306 ntBASIC4.38□□□□□ -1.71
TDP1Q9NUW8 LINC02365-202ENST00000520280 607 ntTSL 3 BASIC4.38□□□□□ -1.71
TDP1Q9NUW8 AC015468.4-201ENST00000523496 568 ntTSL 4 BASIC4.38□□□□□ -1.71
TDP1Q9NUW8 AC104383.1-201ENST00000530297 370 ntBASIC4.38□□□□□ -1.71
TDP1Q9NUW8 AC022882.1-201ENST00000532142 501 ntBASIC4.38□□□□□ -1.71
TDP1Q9NUW8 AC092745.2-201ENST00000537764 620 ntTSL 3 BASIC4.38□□□□□ -1.71
TDP1Q9NUW8 AL133153.1-201ENST00000557756 303 ntBASIC4.38□□□□□ -1.71
TDP1Q9NUW8 LINC01584-202ENST00000563990 852 ntTSL 3 BASIC4.38□□□□□ -1.71
TDP1Q9NUW8 AC009145.3-201ENST00000567386 476 ntTSL 3 BASIC4.38□□□□□ -1.71
TDP1Q9NUW8 AC034105.4-201ENST00000568304 277 ntBASIC4.38□□□□□ -1.71
TDP1Q9NUW8 AL157938.2-203ENST00000589540 931 ntTSL 5 BASIC4.38□□□□□ -1.71
TDP1Q9NUW8 AC012669.1-201ENST00000603209 283 ntBASIC4.38□□□□□ -1.71
TDP1Q9NUW8 AC007621.1-201ENST00000604544 437 ntBASIC4.38□□□□□ -1.71
TDP1Q9NUW8 Z84480.1-201ENST00000605131 311 ntBASIC4.38□□□□□ -1.71
TDP1Q9NUW8 AL158211.4-201ENST00000606988 584 ntBASIC4.38□□□□□ -1.71
TDP1Q9NUW8 AC093788.1-201ENST00000609356 927 ntBASIC4.38□□□□□ -1.71
TDP1Q9NUW8 AC103710.2-201ENST00000609912 942 ntBASIC4.38□□□□□ -1.71
TDP1Q9NUW8 C8orf59-208ENST00000612809 475 ntAPPRIS P1 TSL 1 (best) BASIC4.38□□□□□ -1.71
TDP1Q9NUW8 AC034229.5-201ENST00000624258 185 ntBASIC4.38□□□□□ -1.71
TDP1Q9NUW8 AC019226.1-201ENST00000625666 515 ntBASIC4.38□□□□□ -1.71
TDP1Q9NUW8 MIR548A1HG-201ENST00000636739 558 ntTSL 4 BASIC4.38□□□□□ -1.71
TDP1Q9NUW8 CNGA1-209ENST00000544810 2722 ntAPPRIS ALT2 TSL 5 BASIC4.38□□□□□ -1.71
TDP1Q9NUW8 AC074029.4-201ENST00000624796 1859 ntBASIC4.38□□□□□ -1.71
TDP1Q9NUW8 TES-202ENST00000393481 2763 ntTSL 1 (best) BASIC4.38□□□□□ -1.71
TDP1Q9NUW8 AC105074.1-201ENST00000623380 3095 ntBASIC4.38□□□□□ -1.71
TDP1Q9NUW8 MS4A1-202ENST00000389939 3372 ntAPPRIS P1 TSL 1 (best) BASIC4.38□□□□□ -1.71
TDP1Q9NUW8 RAP1GDS1-205ENST00000408927 3681 ntAPPRIS P3 TSL 2 BASIC4.38□□□□□ -1.71
TDP1Q9NUW8 RMDN2-204ENST00000406384 1932 ntAPPRIS P1 TSL 1 (best) BASIC4.38□□□□□ -1.71
TDP1Q9NUW8 UBE2W-207ENST00000602593 2201 ntAPPRIS P1 TSL 1 (best) BASIC4.38□□□□□ -1.71
TDP1Q9NUW8 SERPINI2-201ENST00000264677 1678 ntAPPRIS P1 TSL 1 (best) BASIC4.38□□□□□ -1.71
TDP1Q9NUW8 LDHAL6CP-202ENST00000550738 3224 ntBASIC4.38□□□□□ -1.71
TDP1Q9NUW8 ZNF28-203ENST00000438150 5171 ntTSL 2 BASIC4.38□□□□□ -1.71
TDP1Q9NUW8 ORMDL1-201ENST00000325795 2692 ntAPPRIS P1 TSL 1 (best) BASIC4.38□□□□□ -1.71
TDP1Q9NUW8 CSPP1-203ENST00000519668 3715 ntAPPRIS ALT2 TSL 1 (best) BASIC4.37□□□□□ -1.71
TDP1Q9NUW8 STON1-GTF2A1L-203ENST00000402114 3790 ntTSL 2 BASIC4.37□□□□□ -1.71
TDP1Q9NUW8 OSBPL9P4-201ENST00000371707 1800 ntBASIC4.37□□□□□ -1.71
TDP1Q9NUW8 RIMS2-201ENST00000262231 3854 ntTSL 1 (best) BASIC4.37□□□□□ -1.71
TDP1Q9NUW8 GPBP1-205ENST00000511209 2243 ntAPPRIS ALT2 TSL 2 BASIC4.37□□□□□ -1.71
TDP1Q9NUW8 ZCCHC7-202ENST00000336755 2619 ntAPPRIS P1 TSL 2 BASIC4.37□□□□□ -1.71
TDP1Q9NUW8 TPTE2-203ENST00000390680 1558 ntTSL 1 (best) BASIC4.37□□□□□ -1.71
TDP1Q9NUW8 PPHLN1-208ENST00000449194 1583 ntAPPRIS ALT1 TSL 1 (best) BASIC4.37□□□□□ -1.71
TDP1Q9NUW8 DTHD1-205ENST00000507598 2606 ntTSL 1 (best) BASIC4.37□□□□□ -1.71
TDP1Q9NUW8 WDFY3-201ENST00000295888 14247 ntAPPRIS P1 TSL 1 (best) BASIC4.37□□□□□ -1.71
TDP1Q9NUW8 F2RL2-201ENST00000296641 3429 ntAPPRIS P1 TSL 1 (best) BASIC4.37□□□□□ -1.71
TDP1Q9NUW8 RNU6-1120P-201ENST00000362988 108 ntBASIC4.37□□□□□ -1.71
TDP1Q9NUW8 RNU6-1097P-201ENST00000363586 107 ntBASIC4.37□□□□□ -1.71
TDP1Q9NUW8 RNU6-1322P-201ENST00000364309 107 ntBASIC4.37□□□□□ -1.71
TDP1Q9NUW8 SNORA48.7-201ENST00000391302 135 ntBASIC4.37□□□□□ -1.71
TDP1Q9NUW8 HSPD1P16-201ENST00000402302 394 ntBASIC4.37□□□□□ -1.71
TDP1Q9NUW8 FGF7P8-201ENST00000402994 292 ntBASIC4.37□□□□□ -1.71
TDP1Q9NUW8 RPL21P65-201ENST00000406094 466 ntBASIC4.37□□□□□ -1.71
TDP1Q9NUW8 LINC00301-202ENST00000412599 772 ntTSL 1 (best) BASIC4.37□□□□□ -1.71
TDP1Q9NUW8 CR769775.2-201ENST00000417850 891 ntTSL 3 BASIC4.37□□□□□ -1.71
TDP1Q9NUW8 AL162414.1-201ENST00000426204 744 ntTSL 3 BASIC4.37□□□□□ -1.71
TDP1Q9NUW8 CYP1B1-AS1-202ENST00000427168 484 ntTSL 4 BASIC4.37□□□□□ -1.71
TDP1Q9NUW8 ARPP21-211ENST00000427542 568 ntTSL 4 BASIC4.37□□□□□ -1.71
TDP1Q9NUW8 AC023590.1-205ENST00000430457 676 ntTSL 3 BASIC4.37□□□□□ -1.71
TDP1Q9NUW8 AC090617.2-201ENST00000433167 404 ntTSL 3 BASIC4.37□□□□□ -1.71
TDP1Q9NUW8 AC062032.1-201ENST00000436245 355 ntTSL 5 BASIC4.37□□□□□ -1.71
Retrieved 100 of 98,524 protein–RNA pairs in 107.9 ms