Protein–RNA interactions for Protein: Q96RL7

VPS13A, Vacuolar protein sorting-associated protein 13A, humanhuman

Predictions only

Length 3,174 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13AQ96RL7 ZGRF1-212ENST00000612287 2176 ntTSL 1 (best) BASIC1.66□□□□□ -2.14
VPS13AQ96RL7 U3.37-201ENST00000408528 213 ntBASIC1.66□□□□□ -2.14
VPS13AQ96RL7 Z98749.1-201ENST00000454123 541 ntTSL 5 BASIC1.66□□□□□ -2.14
VPS13AQ96RL7 AL441989.1-201ENST00000454204 382 ntTSL 3 BASIC1.66□□□□□ -2.14
VPS13AQ96RL7 RPS29P1-201ENST00000465274 159 ntBASIC1.66□□□□□ -2.14
VPS13AQ96RL7 AC007493.1-202ENST00000567899 517 ntTSL 2 BASIC1.66□□□□□ -2.14
VPS13AQ96RL7 MTATP6P3-201ENST00000581686 676 ntBASIC1.66□□□□□ -2.14
VPS13AQ96RL7 AC098848.2-201ENST00000588023 330 ntBASIC1.66□□□□□ -2.14
VPS13AQ96RL7 AC245036.5-201ENST00000596330 847 ntBASIC1.66□□□□□ -2.14
VPS13AQ96RL7 CFH-202ENST00000367429 4127 ntAPPRIS P1 TSL 1 (best) BASIC1.66□□□□□ -2.14
VPS13AQ96RL7 AGL-205ENST00000370163 7166 ntAPPRIS P1 TSL 1 (best) BASIC1.66□□□□□ -2.14
VPS13AQ96RL7 SNORA31-201ENST00000362607 130 ntBASIC1.66□□□□□ -2.14
VPS13AQ96RL7 RNU1-93P-201ENST00000364704 169 ntBASIC1.66□□□□□ -2.14
VPS13AQ96RL7 C1orf189-201ENST00000368525 387 ntAPPRIS P1 TSL 1 (best) BASIC1.66□□□□□ -2.14
VPS13AQ96RL7 CTNNA2-204ENST00000409266 432 ntTSL 3 BASIC1.66□□□□□ -2.14
VPS13AQ96RL7 AC004946.1-201ENST00000421825 751 ntTSL 3 BASIC1.66□□□□□ -2.14
VPS13AQ96RL7 AC073310.1-201ENST00000423226 1033 ntBASIC1.66□□□□□ -2.14
VPS13AQ96RL7 HAR1A.1-201ENST00000459583 118 ntBASIC1.66□□□□□ -2.14
VPS13AQ96RL7 LEKR1-205ENST00000477399 621 ntTSL 2 BASIC1.66□□□□□ -2.14
VPS13AQ96RL7 SNORA70.14-201ENST00000516205 110 ntBASIC1.66□□□□□ -2.14
VPS13AQ96RL7 RNA5SP402-201ENST00000517148 110 ntBASIC1.66□□□□□ -2.14
VPS13AQ96RL7 AB015752.1-201ENST00000521975 578 ntTSL 5 BASIC1.66□□□□□ -2.14
VPS13AQ96RL7 BX649567.1-201ENST00000642071 1134 ntBASIC1.66□□□□□ -2.14
VPS13AQ96RL7 MBNL3-212ENST00000538204 11294 ntTSL 1 (best) BASIC1.66□□□□□ -2.14
VPS13AQ96RL7 CXADR-205ENST00000400169 1445 ntAPPRIS ALT2 TSL 5 BASIC1.66□□□□□ -2.14
VPS13AQ96RL7 AC123767.1-201ENST00000519537 1439 ntTSL 5 BASIC1.66□□□□□ -2.14
VPS13AQ96RL7 PHC3-215ENST00000495893 12666 ntAPPRIS P1 TSL 1 (best) BASIC1.66□□□□□ -2.14
VPS13AQ96RL7 AC093010.3-201ENST00000570269 15214 ntBASIC1.66□□□□□ -2.14
VPS13AQ96RL7 UHRF1BP1L-203ENST00000545232 4088 ntTSL 1 (best) BASIC1.65□□□□□ -2.14
VPS13AQ96RL7 DYNLT3P1-201ENST00000378574 347 ntBASIC1.65□□□□□ -2.14
VPS13AQ96RL7 AC129850.1-201ENST00000436203 508 ntBASIC1.65□□□□□ -2.14
VPS13AQ96RL7 RN7SL274P-201ENST00000492268 272 ntBASIC1.65□□□□□ -2.14
VPS13AQ96RL7 AC016957.1-201ENST00000534895 309 ntBASIC1.65□□□□□ -2.14
VPS13AQ96RL7 MIR151B-201ENST00000584249 96 ntBASIC1.65□□□□□ -2.14
VPS13AQ96RL7 AC004542.1-201ENST00000602955 264 ntTSL 3 BASIC1.65□□□□□ -2.14
VPS13AQ96RL7 RGPD1-204ENST00000559485 5247 ntAPPRIS P2 TSL 1 (best) BASIC1.65□□□□□ -2.14
VPS13AQ96RL7 AC013286.1-201ENST00000412137 381 ntTSL 5 BASIC1.65□□□□□ -2.15
VPS13AQ96RL7 MIR4435-2HG-213ENST00000451884 423 ntTSL 3 BASIC1.65□□□□□ -2.15
VPS13AQ96RL7 AC015771.1-201ENST00000527283 554 ntTSL 4 BASIC1.65□□□□□ -2.15
VPS13AQ96RL7 AC008537.2-201ENST00000596135 482 ntTSL 3 BASIC1.65□□□□□ -2.15
VPS13AQ96RL7 AC002487.1-201ENST00000604565 994 ntBASIC1.65□□□□□ -2.15
VPS13AQ96RL7 AL353770.2-201ENST00000620024 78 ntBASIC1.65□□□□□ -2.15
VPS13AQ96RL7 MIR1323-201ENST00000408090 73 ntBASIC1.65□□□□□ -2.15
VPS13AQ96RL7 RNU6-516P-201ENST00000411381 104 ntBASIC1.65□□□□□ -2.15
VPS13AQ96RL7 RPL39P40-201ENST00000445481 146 ntBASIC1.65□□□□□ -2.15
VPS13AQ96RL7 AL049548.1-201ENST00000458194 385 ntTSL 2 BASIC1.65□□□□□ -2.15
VPS13AQ96RL7 RNU4ATAC11P-201ENST00000515939 126 ntBASIC1.65□□□□□ -2.15
VPS13AQ96RL7 SDHAF2-205ENST00000537782 559 ntTSL 4 BASIC1.65□□□□□ -2.15
VPS13AQ96RL7 AC092138.2-201ENST00000563811 428 ntTSL 5 BASIC1.65□□□□□ -2.15
VPS13AQ96RL7 AC124283.4-201ENST00000581815 456 ntBASIC1.65□□□□□ -2.15
VPS13AQ96RL7 AL161782.1-201ENST00000622930 586 ntTSL 3 BASIC1.65□□□□□ -2.15
VPS13AQ96RL7 ERBIN-212ENST00000508515 4374 ntTSL 5 BASIC1.64□□□□□ -2.15
VPS13AQ96RL7 EIF1AXP1-201ENST00000419267 435 ntBASIC1.64□□□□□ -2.15
VPS13AQ96RL7 RNU2-58P-201ENST00000516403 183 ntBASIC1.64□□□□□ -2.15
VPS13AQ96RL7 RNU6-1223P-201ENST00000517124 104 ntBASIC1.64□□□□□ -2.15
VPS13AQ96RL7 AC090398.1-202ENST00000580403 457 ntTSL 2 BASIC1.64□□□□□ -2.15
VPS13AQ96RL7 AC009314.1-201ENST00000603871 304 ntBASIC1.64□□□□□ -2.15
VPS13AQ96RL7 SLITRK6-201ENST00000400286 4318 ntAPPRIS P1 TSL 1 (best) BASIC1.64□□□□□ -2.15
VPS13AQ96RL7 RNU1-42P-201ENST00000364033 160 ntBASIC1.64□□□□□ -2.15
VPS13AQ96RL7 RNU6-328P-201ENST00000390887 106 ntBASIC1.64□□□□□ -2.15
VPS13AQ96RL7 MFF-206ENST00000392059 1710 ntTSL 5 BASIC1.64□□□□□ -2.15
VPS13AQ96RL7 AC244505.5-201ENST00000443639 207 ntBASIC1.64□□□□□ -2.15
VPS13AQ96RL7 COX6CP12-201ENST00000446748 202 ntBASIC1.64□□□□□ -2.15
VPS13AQ96RL7 AC010976.1-211ENST00000454503 644 ntTSL 2 BASIC1.64□□□□□ -2.15
VPS13AQ96RL7 CMC2-208ENST00000564249 890 ntAPPRIS P1 TSL 5 BASIC1.64□□□□□ -2.15
VPS13AQ96RL7 MSMB-201ENST00000581478 386 ntTSL 1 (best) BASIC1.64□□□□□ -2.15
VPS13AQ96RL7 AC006023.2-201ENST00000609916 167 ntBASIC1.64□□□□□ -2.15
VPS13AQ96RL7 RMST_6.1-201ENST00000611980 203 ntBASIC1.64□□□□□ -2.15
VPS13AQ96RL7 AC073348.1-201ENST00000623002 331 ntBASIC1.64□□□□□ -2.15
VPS13AQ96RL7 SPAM1-203ENST00000402183 1860 ntAPPRIS P4 TSL 5 BASIC1.64□□□□□ -2.15
VPS13AQ96RL7 AL136133.1-201ENST00000413694 376 ntBASIC1.63□□□□□ -2.15
VPS13AQ96RL7 RPL9P9-201ENST00000418824 636 ntTSL 2 BASIC1.63□□□□□ -2.15
VPS13AQ96RL7 AC006159.2-201ENST00000421965 692 ntTSL 2 BASIC1.63□□□□□ -2.15
VPS13AQ96RL7 AC244033.1-201ENST00000426826 870 ntBASIC1.63□□□□□ -2.15
VPS13AQ96RL7 RPL23AP20-201ENST00000447965 421 ntBASIC1.63□□□□□ -2.15
VPS13AQ96RL7 AC025033.1-201ENST00000463883 194 ntBASIC1.63□□□□□ -2.15
VPS13AQ96RL7 AIG1P1-201ENST00000503376 148 ntBASIC1.63□□□□□ -2.15
VPS13AQ96RL7 C11orf65-206ENST00000529391 973 ntAPPRIS P1 TSL 2 BASIC1.63□□□□□ -2.15
VPS13AQ96RL7 AC090092.1-201ENST00000530576 510 ntTSL 2 BASIC1.63□□□□□ -2.15
VPS13AQ96RL7 AC008126.1-201ENST00000549019 480 ntBASIC1.63□□□□□ -2.15
VPS13AQ96RL7 IGKV1-33-202ENST00000558152 324 ntAPPRIS ALT2 TSL 5 BASIC1.63□□□□□ -2.15
VPS13AQ96RL7 IGKV1D-33-202ENST00000611734 324 ntAPPRIS ALT2 TSL 5 BASIC1.63□□□□□ -2.15
VPS13AQ96RL7 SOCS4-201ENST00000339298 6667 ntAPPRIS P1 TSL 1 (best) BASIC1.63□□□□□ -2.15
VPS13AQ96RL7 AC092326.2-201ENST00000624772 1561 ntBASIC1.63□□□□□ -2.15
VPS13AQ96RL7 AC066616.2-201ENST00000559334 1481 ntBASIC1.63□□□□□ -2.15
VPS13AQ96RL7 AL121972.1-201ENST00000402023 252 ntBASIC1.63□□□□□ -2.15
VPS13AQ96RL7 STAT4-203ENST00000409995 709 ntTSL 5 BASIC1.63□□□□□ -2.15
VPS13AQ96RL7 RPL7P46-201ENST00000425129 740 ntBASIC1.63□□□□□ -2.15
VPS13AQ96RL7 AC080078.3-201ENST00000605407 463 ntBASIC1.63□□□□□ -2.15
VPS13AQ96RL7 AGTR1-206ENST00000474935 1795 ntAPPRIS P1 TSL 3 BASIC1.63□□□□□ -2.15
VPS13AQ96RL7 RNA5SP160-201ENST00000364866 120 ntBASIC1.63□□□□□ -2.15
VPS13AQ96RL7 AL365400.1-201ENST00000431854 640 ntBASIC1.63□□□□□ -2.15
VPS13AQ96RL7 AC093579.1-201ENST00000439455 352 ntTSL 2 BASIC1.63□□□□□ -2.15
VPS13AQ96RL7 RPS27P5-201ENST00000444247 244 ntBASIC1.63□□□□□ -2.15
VPS13AQ96RL7 LINC01326-201ENST00000495159 755 ntTSL 2 BASIC1.63□□□□□ -2.15
VPS13AQ96RL7 IGHVII-53-1-201ENST00000519538 255 ntBASIC1.63□□□□□ -2.15
VPS13AQ96RL7 AC109446.2-201ENST00000567872 497 ntBASIC1.63□□□□□ -2.15
VPS13AQ96RL7 AL391646.1-201ENST00000603860 190 ntBASIC1.63□□□□□ -2.15
VPS13AQ96RL7 CDH8-205ENST00000577730 8009 ntTSL 5 BASIC1.63□□□□□ -2.15
VPS13AQ96RL7 RNU6-37P-201ENST00000362692 107 ntBASIC1.62□□□□□ -2.15
Retrieved 100 of 98,524 protein–RNA pairs in 102.7 ms