Protein–RNA interactions for Protein: Q7Z6J0

SH3RF1, E3 ubiquitin-protein ligase SH3RF1, humanhuman

Predictions only

Length 888 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SH3RF1Q7Z6J0 RNU4-50P-201ENST00000364361 141 ntBASIC6.13□□□□□ -1.43
SH3RF1Q7Z6J0 RNU6-398P-201ENST00000384143 109 ntBASIC6.13□□□□□ -1.43
SH3RF1Q7Z6J0 SNORD56.6-201ENST00000384569 71 ntBASIC6.13□□□□□ -1.43
SH3RF1Q7Z6J0 MIR517A-201ENST00000385001 87 ntBASIC6.13□□□□□ -1.43
SH3RF1Q7Z6J0 RPS4XP7-201ENST00000406274 780 ntBASIC6.13□□□□□ -1.43
SH3RF1Q7Z6J0 MIR548H3-201ENST00000408771 118 ntBASIC6.13□□□□□ -1.43
SH3RF1Q7Z6J0 AC092164.1-202ENST00000428036 486 ntTSL 3 BASIC6.13□□□□□ -1.43
SH3RF1Q7Z6J0 PSMA2P3-201ENST00000429685 675 ntBASIC6.13□□□□□ -1.43
SH3RF1Q7Z6J0 FTLP19-201ENST00000433300 394 ntBASIC6.13□□□□□ -1.43
SH3RF1Q7Z6J0 AC091390.1-201ENST00000433904 331 ntBASIC6.13□□□□□ -1.43
SH3RF1Q7Z6J0 AC016292.1-201ENST00000438344 235 ntTSL 3 BASIC6.13□□□□□ -1.43
SH3RF1Q7Z6J0 TPT1P13-201ENST00000449760 499 ntBASIC6.13□□□□□ -1.43
SH3RF1Q7Z6J0 snoU13.7-201ENST00000459220 104 ntBASIC6.13□□□□□ -1.43
SH3RF1Q7Z6J0 ODF2L-216ENST00000486215 311 ntTSL 2 BASIC6.13□□□□□ -1.43
SH3RF1Q7Z6J0 RN7SL346P-201ENST00000491561 294 ntBASIC6.13□□□□□ -1.43
SH3RF1Q7Z6J0 AC093909.2-201ENST00000505178 437 ntTSL 3 BASIC6.13□□□□□ -1.43
SH3RF1Q7Z6J0 LEF1-218ENST00000512172 598 ntTSL 2 BASIC6.13□□□□□ -1.43
SH3RF1Q7Z6J0 Y_RNA.703-201ENST00000516846 111 ntBASIC6.13□□□□□ -1.43
SH3RF1Q7Z6J0 AC100870.1-201ENST00000522035 505 ntBASIC6.13□□□□□ -1.43
SH3RF1Q7Z6J0 DEFB108D-201ENST00000527787 222 ntBASIC6.13□□□□□ -1.43
SH3RF1Q7Z6J0 AC055878.1-201ENST00000531858 281 ntTSL 3 BASIC6.13□□□□□ -1.43
SH3RF1Q7Z6J0 AC018552.1-201ENST00000562099 811 ntBASIC6.13□□□□□ -1.43
SH3RF1Q7Z6J0 AL031176.1-201ENST00000604554 466 ntBASIC6.13□□□□□ -1.43
SH3RF1Q7Z6J0 AL451044.1-201ENST00000604867 238 ntBASIC6.13□□□□□ -1.43
SH3RF1Q7Z6J0 AC109583.2-201ENST00000617367 129 ntBASIC6.13□□□□□ -1.43
SH3RF1Q7Z6J0 LRRC49-204ENST00000544974 6605 ntTSL 2 BASIC6.13□□□□□ -1.43
SH3RF1Q7Z6J0 VPS41-203ENST00000395969 3181 ntTSL 5 BASIC6.13□□□□□ -1.43
SH3RF1Q7Z6J0 LINC02397-201ENST00000504409 10626 ntTSL 1 (best) BASIC6.13□□□□□ -1.43
SH3RF1Q7Z6J0 GTF2H5-201ENST00000607778 7481 ntAPPRIS P1 TSL 1 (best) BASIC6.13□□□□□ -1.43
SH3RF1Q7Z6J0 ARHGAP20-206ENST00000533353 6066 ntAPPRIS ALT2 TSL 1 (best) BASIC6.13□□□□□ -1.43
SH3RF1Q7Z6J0 AC020633.1-201ENST00000468439 2247 ntBASIC6.13□□□□□ -1.43
SH3RF1Q7Z6J0 MDN1-201ENST00000369393 18413 ntAPPRIS P1 TSL 1 (best) BASIC6.13□□□□□ -1.43
SH3RF1Q7Z6J0 ADAM18-201ENST00000265707 2388 ntAPPRIS P3 TSL 1 (best) BASIC6.13□□□□□ -1.43
SH3RF1Q7Z6J0 AC087257.1-201ENST00000506925 2639 ntTSL 4 BASIC6.12□□□□□ -1.43
SH3RF1Q7Z6J0 FTO-204ENST00000463855 3056 ntTSL 1 (best) BASIC6.12□□□□□ -1.43
SH3RF1Q7Z6J0 TSPAN6-204ENST00000612152 3796 ntTSL 5 BASIC6.12□□□□□ -1.43
SH3RF1Q7Z6J0 CTAGE5-219ENST00000640607 4239 ntAPPRIS P5 TSL 1 (best) BASIC6.12□□□□□ -1.43
SH3RF1Q7Z6J0 SMIM11P1-201ENST00000369586 178 ntBASIC6.12□□□□□ -1.43
SH3RF1Q7Z6J0 SNORA51.8-201ENST00000384234 132 ntBASIC6.12□□□□□ -1.43
SH3RF1Q7Z6J0 AL133388.1-201ENST00000404509 287 ntBASIC6.12□□□□□ -1.43
SH3RF1Q7Z6J0 RNU2-71P-201ENST00000411395 189 ntBASIC6.12□□□□□ -1.43
SH3RF1Q7Z6J0 AL138760.1-201ENST00000423283 435 ntTSL 3 BASIC6.12□□□□□ -1.43
SH3RF1Q7Z6J0 AL133284.1-201ENST00000423715 4996 ntTSL 1 (best) BASIC6.12□□□□□ -1.43
SH3RF1Q7Z6J0 EIF2AP4-201ENST00000424793 1781 ntBASIC6.12□□□□□ -1.43
SH3RF1Q7Z6J0 AC241644.2-201ENST00000426504 480 ntTSL 3 BASIC6.12□□□□□ -1.43
SH3RF1Q7Z6J0 RPL7AP49-201ENST00000429522 581 ntBASIC6.12□□□□□ -1.43
SH3RF1Q7Z6J0 AL591438.1-201ENST00000433508 581 ntBASIC6.12□□□□□ -1.43
SH3RF1Q7Z6J0 ITGAV-204ENST00000433736 3288 ntAPPRIS ALT2 TSL 2 BASIC6.12□□□□□ -1.43
SH3RF1Q7Z6J0 AP000770.1-201ENST00000444123 583 ntTSL 5 BASIC6.12□□□□□ -1.43
SH3RF1Q7Z6J0 AL031274.1-201ENST00000450334 232 ntBASIC6.12□□□□□ -1.43
SH3RF1Q7Z6J0 TRBV2-201ENST00000455382 421 ntAPPRIS P1 BASIC6.12□□□□□ -1.43
SH3RF1Q7Z6J0 RN7SL738P-201ENST00000470264 297 ntBASIC6.12□□□□□ -1.43
SH3RF1Q7Z6J0 AC022034.3-201ENST00000471393 478 ntBASIC6.12□□□□□ -1.43
SH3RF1Q7Z6J0 MAK-203ENST00000474039 3859 ntAPPRIS P1 TSL 1 (best) BASIC6.12□□□□□ -1.43
SH3RF1Q7Z6J0 SOX2-OT-218ENST00000498731 3576 ntTSL 1 (best) BASIC6.12□□□□□ -1.43
SH3RF1Q7Z6J0 AC109464.3-201ENST00000509456 204 ntTSL 5 BASIC6.12□□□□□ -1.43
SH3RF1Q7Z6J0 RNU7-4P-201ENST00000516961 62 ntBASIC6.12□□□□□ -1.43
SH3RF1Q7Z6J0 RNU6-570P-201ENST00000517051 105 ntBASIC6.12□□□□□ -1.43
SH3RF1Q7Z6J0 AC018442.3-201ENST00000523025 183 ntBASIC6.12□□□□□ -1.43
SH3RF1Q7Z6J0 AL122126.1-201ENST00000546905 1318 ntBASIC6.12□□□□□ -1.43
SH3RF1Q7Z6J0 LINC01405-202ENST00000547607 674 ntTSL 3 BASIC6.12□□□□□ -1.43
SH3RF1Q7Z6J0 AL049839.1-201ENST00000556151 657 ntBASIC6.12□□□□□ -1.43
SH3RF1Q7Z6J0 AC092138.1-201ENST00000568659 472 ntTSL 2 BASIC6.12□□□□□ -1.43
SH3RF1Q7Z6J0 AP005403.1-201ENST00000579720 229 ntBASIC6.12□□□□□ -1.43
SH3RF1Q7Z6J0 SLC14A2-AS1-204ENST00000592899 359 ntTSL 3 BASIC6.12□□□□□ -1.43
SH3RF1Q7Z6J0 RAC1P9-201ENST00000604990 392 ntBASIC6.12□□□□□ -1.43
SH3RF1Q7Z6J0 AC103858.1-201ENST00000607019 476 ntTSL 3 BASIC6.12□□□□□ -1.43
SH3RF1Q7Z6J0 SNHG22-203ENST00000617833 660 ntBASIC6.12□□□□□ -1.43
SH3RF1Q7Z6J0 AP000432.2-201ENST00000624164 2048 ntBASIC6.12□□□□□ -1.43
SH3RF1Q7Z6J0 FRMD7-202ENST00000370879 2864 ntTSL 1 (best) BASIC6.12□□□□□ -1.43
SH3RF1Q7Z6J0 LINC01553-203ENST00000521074 4329 ntTSL 1 (best) BASIC6.11□□□□□ -1.43
SH3RF1Q7Z6J0 AC114947.2-201ENST00000565748 2125 ntBASIC6.11□□□□□ -1.43
SH3RF1Q7Z6J0 CBLL1-201ENST00000222597 2003 ntAPPRIS ALT1 TSL 1 (best) BASIC6.11□□□□□ -1.43
SH3RF1Q7Z6J0 ZNF72P-201ENST00000425869 1908 ntBASIC6.11□□□□□ -1.43
SH3RF1Q7Z6J0 SRRM1-202ENST00000374389 3110 ntAPPRIS ALT2 TSL 5 BASIC6.11□□□□□ -1.43
SH3RF1Q7Z6J0 LINC01541-202ENST00000568095 3105 ntTSL 1 (best) BASIC6.11□□□□□ -1.43
SH3RF1Q7Z6J0 OPRM1-215ENST00000520708 1519 ntTSL 1 (best) BASIC6.11□□□□□ -1.43
SH3RF1Q7Z6J0 Y_RNA.29-201ENST00000362570 113 ntBASIC6.11□□□□□ -1.43
SH3RF1Q7Z6J0 RN7SKP104-201ENST00000362605 328 ntBASIC6.11□□□□□ -1.43
SH3RF1Q7Z6J0 RNU4-42P-201ENST00000364738 142 ntBASIC6.11□□□□□ -1.43
SH3RF1Q7Z6J0 RNU6-637P-201ENST00000384050 107 ntBASIC6.11□□□□□ -1.43
SH3RF1Q7Z6J0 RNU6-886P-201ENST00000384319 105 ntBASIC6.11□□□□□ -1.43
SH3RF1Q7Z6J0 MIR551A-201ENST00000385042 96 ntBASIC6.11□□□□□ -1.43
SH3RF1Q7Z6J0 RNA5SP241-201ENST00000391326 114 ntBASIC6.11□□□□□ -1.43
SH3RF1Q7Z6J0 RNU6-1156P-201ENST00000410365 100 ntBASIC6.11□□□□□ -1.43
SH3RF1Q7Z6J0 UBE2FP1-201ENST00000416536 447 ntBASIC6.11□□□□□ -1.43
SH3RF1Q7Z6J0 DNAJC19P7-201ENST00000428811 344 ntBASIC6.11□□□□□ -1.43
SH3RF1Q7Z6J0 AL354863.1-202ENST00000431695 494 ntTSL 5 BASIC6.11□□□□□ -1.43
SH3RF1Q7Z6J0 AL591704.1-201ENST00000432574 275 ntBASIC6.11□□□□□ -1.43
SH3RF1Q7Z6J0 LINC00894-203ENST00000432696 298 ntTSL 1 (best) BASIC6.11□□□□□ -1.43
SH3RF1Q7Z6J0 AL136140.1-201ENST00000436113 473 ntTSL 3 BASIC6.11□□□□□ -1.43
SH3RF1Q7Z6J0 AL590399.4-201ENST00000436561 601 ntBASIC6.11□□□□□ -1.43
SH3RF1Q7Z6J0 AL161618.1-201ENST00000438738 761 ntTSL 5 BASIC6.11□□□□□ -1.43
SH3RF1Q7Z6J0 AC098831.1-201ENST00000440661 216 ntBASIC6.11□□□□□ -1.43
SH3RF1Q7Z6J0 SNRPCP3-201ENST00000474888 476 ntBASIC6.11□□□□□ -1.43
SH3RF1Q7Z6J0 TRBVB-201ENST00000477100 408 ntBASIC6.11□□□□□ -1.43
SH3RF1Q7Z6J0 RPL21P103-201ENST00000479921 488 ntBASIC6.11□□□□□ -1.43
SH3RF1Q7Z6J0 AC069499.1-201ENST00000489433 509 ntBASIC6.11□□□□□ -1.43
SH3RF1Q7Z6J0 AC016651.1-201ENST00000502680 822 ntTSL 3 BASIC6.11□□□□□ -1.43
SH3RF1Q7Z6J0 AL159163.1-201ENST00000507747 600 ntAPPRIS P1 TSL 5 BASIC6.11□□□□□ -1.43
Retrieved 100 of 98,524 protein–RNA pairs in 110.9 ms