Protein–RNA interactions for Protein: Q7Z407

CSMD3, CUB and sushi domain-containing protein 3, humanhuman

Predictions only

Length 3,707 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD3Q7Z407 LINC01355-202ENST00000604481 400 ntTSL 2 BASIC1.29□□□□□ -2.2
CSMD3Q7Z407 RGS22-214ENST00000523287 4033 ntAPPRIS ALT2 TSL 2 BASIC1.28□□□□□ -2.2
CSMD3Q7Z407 SYNE1-212ENST00000423061 27436 ntAPPRIS ALT2 TSL 1 (best) BASIC1.28□□□□□ -2.2
CSMD3Q7Z407 AC068700.1-201ENST00000565862 3754 ntBASIC1.28□□□□□ -2.2
CSMD3Q7Z407 SNORA62.2-201ENST00000364672 152 ntBASIC1.28□□□□□ -2.2
CSMD3Q7Z407 RNU6-225P-201ENST00000384613 103 ntBASIC1.28□□□□□ -2.2
CSMD3Q7Z407 AC010976.1-211ENST00000454503 644 ntTSL 2 BASIC1.28□□□□□ -2.2
CSMD3Q7Z407 GTF2IP9-201ENST00000502460 301 ntBASIC1.28□□□□□ -2.2
CSMD3Q7Z407 IGHVIII-38-1-201ENST00000521454 282 ntBASIC1.28□□□□□ -2.2
CSMD3Q7Z407 ATF7IP2-206ENST00000543967 998 ntTSL 2 BASIC1.28□□□□□ -2.2
CSMD3Q7Z407 AC007493.1-202ENST00000567899 517 ntTSL 2 BASIC1.28□□□□□ -2.2
CSMD3Q7Z407 AC012119.1-201ENST00000603184 222 ntBASIC1.28□□□□□ -2.2
CSMD3Q7Z407 AC131902.3-201ENST00000611767 581 ntBASIC1.28□□□□□ -2.2
CSMD3Q7Z407 AC010297.1-201ENST00000623948 149 ntBASIC1.28□□□□□ -2.2
CSMD3Q7Z407 BTG3-AS1-201ENST00000626994 552 ntTSL 4 BASIC1.28□□□□□ -2.2
CSMD3Q7Z407 MUC15-205ENST00000529533 2084 ntTSL 1 (best) BASIC1.28□□□□□ -2.2
CSMD3Q7Z407 ESF1-202ENST00000617257 1470 ntTSL 5 BASIC1.28□□□□□ -2.2
CSMD3Q7Z407 ATP2B1-202ENST00000359142 6977 ntTSL 5 BASIC1.28□□□□□ -2.2
CSMD3Q7Z407 AC104462.1-201ENST00000414565 447 ntTSL 2 BASIC1.28□□□□□ -2.2
CSMD3Q7Z407 LINC01935-201ENST00000431897 437 ntTSL 3 BASIC1.28□□□□□ -2.2
CSMD3Q7Z407 AL133260.2-201ENST00000445833 396 ntTSL 3 BASIC1.28□□□□□ -2.2
CSMD3Q7Z407 VTA1P2-201ENST00000520205 911 ntBASIC1.28□□□□□ -2.2
CSMD3Q7Z407 IGHVIII-5-1-201ENST00000523059 99 ntBASIC1.28□□□□□ -2.2
CSMD3Q7Z407 AC107882.1-201ENST00000530837 477 ntTSL 3 BASIC1.28□□□□□ -2.2
CSMD3Q7Z407 LRRC39-204ENST00000620882 1951 ntTSL 5 BASIC1.28□□□□□ -2.2
CSMD3Q7Z407 ZNF117-204ENST00000620222 5317 ntAPPRIS P1 TSL 1 (best) BASIC1.28□□□□□ -2.21
CSMD3Q7Z407 LINC01646-201ENST00000420522 682 ntTSL 3 BASIC1.28□□□□□ -2.21
CSMD3Q7Z407 IGKV2D-36-201ENST00000518643 226 ntBASIC1.28□□□□□ -2.21
CSMD3Q7Z407 AC090753.1-201ENST00000522087 331 ntTSL 3 BASIC1.28□□□□□ -2.21
CSMD3Q7Z407 AL358333.1-201ENST00000555115 467 ntTSL 3 BASIC1.28□□□□□ -2.21
CSMD3Q7Z407 AC105339.2-201ENST00000558342 1091 ntTSL 3 BASIC1.28□□□□□ -2.21
CSMD3Q7Z407 AC066612.2-201ENST00000559875 695 ntTSL 2 BASIC1.28□□□□□ -2.21
CSMD3Q7Z407 MIR4512-201ENST00000583257 77 ntBASIC1.28□□□□□ -2.21
CSMD3Q7Z407 AL035411.2-201ENST00000604022 421 ntBASIC1.28□□□□□ -2.21
CSMD3Q7Z407 AC024560.3-201ENST00000608482 349 ntBASIC1.28□□□□□ -2.21
CSMD3Q7Z407 CUL4AP1-201ENST00000514750 1863 ntBASIC1.28□□□□□ -2.21
CSMD3Q7Z407 AP001148.1-201ENST00000624124 2359 ntBASIC1.27□□□□□ -2.21
CSMD3Q7Z407 U3.15-201ENST00000365398 212 ntBASIC1.27□□□□□ -2.21
CSMD3Q7Z407 MAGI2-AS2-201ENST00000411616 476 ntTSL 2 BASIC1.27□□□□□ -2.21
CSMD3Q7Z407 ZBTB8OS-205ENST00000465588 548 ntTSL 2 BASIC1.27□□□□□ -2.21
CSMD3Q7Z407 RPL23AP55-201ENST00000498163 452 ntBASIC1.27□□□□□ -2.21
CSMD3Q7Z407 HMGB3P15-201ENST00000507326 574 ntBASIC1.27□□□□□ -2.21
CSMD3Q7Z407 AC010406.1-201ENST00000507948 555 ntTSL 3 BASIC1.27□□□□□ -2.21
CSMD3Q7Z407 RNU6ATAC12P-201ENST00000516542 115 ntBASIC1.27□□□□□ -2.21
CSMD3Q7Z407 5S_rRNA.12-201ENST00000617631 107 ntBASIC1.27□□□□□ -2.21
CSMD3Q7Z407 SAMD9-203ENST00000620985 6754 ntAPPRIS P1 TSL 2 BASIC1.27□□□□□ -2.21
CSMD3Q7Z407 CTNNA2-204ENST00000409266 432 ntTSL 3 BASIC1.27□□□□□ -2.21
CSMD3Q7Z407 RPS4XP11-201ENST00000446897 772 ntBASIC1.27□□□□□ -2.21
CSMD3Q7Z407 LINC01474-202ENST00000449235 628 ntTSL 3 BASIC1.27□□□□□ -2.21
CSMD3Q7Z407 GSTA11P-201ENST00000452866 669 ntBASIC1.27□□□□□ -2.21
CSMD3Q7Z407 RNU1-123P-201ENST00000458950 160 ntBASIC1.27□□□□□ -2.21
CSMD3Q7Z407 AC107393.1-201ENST00000512403 346 ntBASIC1.27□□□□□ -2.21
CSMD3Q7Z407 RN7SKP34-201ENST00000516142 244 ntBASIC1.27□□□□□ -2.21
CSMD3Q7Z407 AC009101.2-201ENST00000564293 456 ntTSL 3 BASIC1.27□□□□□ -2.21
CSMD3Q7Z407 VN1R79P-201ENST00000593540 513 ntBASIC1.27□□□□□ -2.21
CSMD3Q7Z407 KIAA1524-206ENST00000491772 3877 ntTSL 1 (best) BASIC1.27□□□□□ -2.21
CSMD3Q7Z407 TRAJ17-201ENST00000390520 63 ntAPPRIS P1 BASIC1.27□□□□□ -2.21
CSMD3Q7Z407 HMGB1P13-201ENST00000406019 642 ntBASIC1.27□□□□□ -2.21
CSMD3Q7Z407 MAMDC2-AS1-203ENST00000420573 339 ntTSL 3 BASIC1.27□□□□□ -2.21
CSMD3Q7Z407 FO393414.1-201ENST00000428697 1184 ntBASIC1.27□□□□□ -2.21
CSMD3Q7Z407 RPL39L-202ENST00000433055 749 ntAPPRIS P1 TSL 2 BASIC1.27□□□□□ -2.21
CSMD3Q7Z407 CDC42P1-201ENST00000456658 548 ntBASIC1.27□□□□□ -2.21
CSMD3Q7Z407 HMGN1P7-201ENST00000491722 313 ntBASIC1.27□□□□□ -2.21
CSMD3Q7Z407 HMGB1P1-201ENST00000522557 636 ntBASIC1.27□□□□□ -2.21
CSMD3Q7Z407 DEUP1-203ENST00000527307 767 ntTSL 3 BASIC1.27□□□□□ -2.21
CSMD3Q7Z407 AC135279.1-201ENST00000543493 504 ntBASIC1.27□□□□□ -2.21
CSMD3Q7Z407 AC011604.1-201ENST00000545978 196 ntBASIC1.27□□□□□ -2.21
CSMD3Q7Z407 AL133166.1-201ENST00000551040 1034 ntTSL 4 BASIC1.27□□□□□ -2.21
CSMD3Q7Z407 AC018554.1-202ENST00000565133 444 ntTSL 3 BASIC1.27□□□□□ -2.21
CSMD3Q7Z407 SNORD39.2-201ENST00000579995 76 ntBASIC1.27□□□□□ -2.21
CSMD3Q7Z407 SOBP-204ENST00000618129 1550 ntTSL 1 (best) BASIC1.27□□□□□ -2.21
CSMD3Q7Z407 MBNL3-212ENST00000538204 11294 ntTSL 1 (best) BASIC1.26□□□□□ -2.21
CSMD3Q7Z407 C1orf189-201ENST00000368525 387 ntAPPRIS P1 TSL 1 (best) BASIC1.26□□□□□ -2.21
CSMD3Q7Z407 U3.37-201ENST00000408528 213 ntBASIC1.26□□□□□ -2.21
CSMD3Q7Z407 AC099060.1-201ENST00000427806 448 ntTSL 3 BASIC1.26□□□□□ -2.21
CSMD3Q7Z407 RPS27P5-201ENST00000444247 244 ntBASIC1.26□□□□□ -2.21
CSMD3Q7Z407 RPL39P40-201ENST00000445481 146 ntBASIC1.26□□□□□ -2.21
CSMD3Q7Z407 AC022784.2-201ENST00000521298 328 ntTSL 2 BASIC1.26□□□□□ -2.21
CSMD3Q7Z407 AC087636.1-201ENST00000554787 573 ntTSL 4 BASIC1.26□□□□□ -2.21
CSMD3Q7Z407 AC020910.1-201ENST00000599404 413 ntTSL 5 BASIC1.26□□□□□ -2.21
CSMD3Q7Z407 Z98949.1-212ENST00000609820 837 ntTSL 5 BASIC1.26□□□□□ -2.21
CSMD3Q7Z407 CKAP2P1-201ENST00000555477 2049 ntBASIC1.26□□□□□ -2.21
CSMD3Q7Z407 DSG2-AS1-202ENST00000583706 2024 ntTSL 5 BASIC1.26□□□□□ -2.21
CSMD3Q7Z407 ZNF260-205ENST00000593142 4047 ntAPPRIS P1 TSL 1 (best) BASIC1.26□□□□□ -2.21
CSMD3Q7Z407 CPXCR1-203ENST00000614120 1485 ntAPPRIS P1 TSL 3 BASIC1.26□□□□□ -2.21
CSMD3Q7Z407 LINC00392-201ENST00000430033 557 ntTSL 3 BASIC1.26□□□□□ -2.21
CSMD3Q7Z407 snoU109.4-201ENST00000458953 143 ntBASIC1.26□□□□□ -2.21
CSMD3Q7Z407 RPS15AP36-201ENST00000492022 382 ntBASIC1.26□□□□□ -2.21
CSMD3Q7Z407 GYPA-208ENST00000512064 441 ntTSL 1 (best) BASIC1.26□□□□□ -2.21
CSMD3Q7Z407 TRIQK-207ENST00000519069 598 ntTSL 4 BASIC1.26□□□□□ -2.21
CSMD3Q7Z407 IGHV3-76-201ENST00000522465 295 ntBASIC1.26□□□□□ -2.21
CSMD3Q7Z407 AC093010.3-201ENST00000570269 15214 ntBASIC1.26□□□□□ -2.21
CSMD3Q7Z407 OR6C2-202ENST00000641202 2105 ntAPPRIS P1 BASIC1.26□□□□□ -2.21
CSMD3Q7Z407 LRRC6-212ENST00000618342 1754 ntAPPRIS ALT1 TSL 5 BASIC1.26□□□□□ -2.21
CSMD3Q7Z407 SPANXN3-201ENST00000370503 590 ntAPPRIS P1 TSL 1 (best) BASIC1.26□□□□□ -2.21
CSMD3Q7Z407 AL513331.1-201ENST00000411908 397 ntBASIC1.26□□□□□ -2.21
CSMD3Q7Z407 AC004837.2-201ENST00000435766 731 ntTSL 3 BASIC1.26□□□□□ -2.21
CSMD3Q7Z407 MIR4458-201ENST00000578872 75 ntBASIC1.26□□□□□ -2.21
CSMD3Q7Z407 AC136443.5-201ENST00000603741 370 ntBASIC1.26□□□□□ -2.21
CSMD3Q7Z407 AC009314.1-201ENST00000603871 304 ntBASIC1.26□□□□□ -2.21
Retrieved 100 of 98,524 protein–RNA pairs in 104.2 ms