Protein–RNA interactions for Protein: Q3V6T2

CCDC88A, Girdin, humanhuman

Predictions only

Length 1,871 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88AQ3V6T2 AC090023.1-201ENST00000545750 443 ntTSL 3 BASIC2.54□□□□□ -2
CCDC88AQ3V6T2 AC010735.1-201ENST00000567305 1026 ntBASIC2.54□□□□□ -2
CCDC88AQ3V6T2 DUXAP3-201ENST00000603616 594 ntBASIC2.54□□□□□ -2
CCDC88AQ3V6T2 AC121761.2-201ENST00000617300 689 ntBASIC2.54□□□□□ -2
CCDC88AQ3V6T2 AC015726.3-201ENST00000624501 418 ntBASIC2.54□□□□□ -2
CCDC88AQ3V6T2 LIPI-204ENST00000614229 1439 ntTSL 1 (best) BASIC2.53□□□□□ -2
CCDC88AQ3V6T2 TSACC-205ENST00000368255 751 ntAPPRIS P1 TSL 1 (best) BASIC2.53□□□□□ -2
CCDC88AQ3V6T2 AL590783.1-201ENST00000424138 456 ntTSL 2 BASIC2.53□□□□□ -2
CCDC88AQ3V6T2 AC023347.2-201ENST00000433994 462 ntBASIC2.53□□□□□ -2
CCDC88AQ3V6T2 AC104308.1-201ENST00000454621 333 ntBASIC2.53□□□□□ -2
CCDC88AQ3V6T2 SNRPGP9-201ENST00000456025 225 ntBASIC2.53□□□□□ -2
CCDC88AQ3V6T2 AC093725.2-201ENST00000507808 356 ntTSL 2 BASIC2.53□□□□□ -2
CCDC88AQ3V6T2 AC098799.2-201ENST00000509466 868 ntBASIC2.53□□□□□ -2
CCDC88AQ3V6T2 C1GALT1P2-201ENST00000510813 1104 ntBASIC2.53□□□□□ -2
CCDC88AQ3V6T2 OR5H4P-201ENST00000510851 923 ntBASIC2.53□□□□□ -2
CCDC88AQ3V6T2 AC110588.1-201ENST00000559699 137 ntBASIC2.53□□□□□ -2
CCDC88AQ3V6T2 AL589935.2-201ENST00000616471 1231 ntBASIC2.53□□□□□ -2
CCDC88AQ3V6T2 AC093591.3-201ENST00000634516 308 ntBASIC2.53□□□□□ -2
CCDC88AQ3V6T2 AC130466.1-201ENST00000636354 4683 ntTSL 5 BASIC2.53□□□□□ -2
CCDC88AQ3V6T2 HMGN2P35-201ENST00000412164 270 ntBASIC2.52□□□□□ -2.01
CCDC88AQ3V6T2 LINC01867-201ENST00000435357 604 ntTSL 2 BASIC2.52□□□□□ -2.01
CCDC88AQ3V6T2 PCCA-AS1-203ENST00000455958 356 ntTSL 3 BASIC2.52□□□□□ -2.01
CCDC88AQ3V6T2 AC078918.1-201ENST00000498515 228 ntBASIC2.52□□□□□ -2.01
CCDC88AQ3V6T2 AC022272.1-201ENST00000503478 777 ntTSL 2 BASIC2.52□□□□□ -2.01
CCDC88AQ3V6T2 LINC01216-201ENST00000515728 824 ntTSL 5 BASIC2.52□□□□□ -2.01
CCDC88AQ3V6T2 AP000889.2-201ENST00000532684 490 ntBASIC2.52□□□□□ -2.01
CCDC88AQ3V6T2 AC012379.1-201ENST00000558304 406 ntTSL 3 BASIC2.52□□□□□ -2.01
CCDC88AQ3V6T2 MIR4448-201ENST00000584360 86 ntBASIC2.52□□□□□ -2.01
CCDC88AQ3V6T2 AP001109.1-201ENST00000587114 279 ntTSL 3 BASIC2.52□□□□□ -2.01
CCDC88AQ3V6T2 MUCL1-205ENST00000619042 243 ntAPPRIS ALT2 TSL 5 BASIC2.52□□□□□ -2.01
CCDC88AQ3V6T2 WWP1P1-201ENST00000466609 2769 ntBASIC2.52□□□□□ -2.01
CCDC88AQ3V6T2 EIF2A-201ENST00000273435 2083 ntAPPRIS ALT1 TSL 1 (best) BASIC2.52□□□□□ -2.01
CCDC88AQ3V6T2 RNY1P10-201ENST00000363268 113 ntBASIC2.52□□□□□ -2.01
CCDC88AQ3V6T2 AC003092.2-201ENST00000411946 446 ntTSL 2 BASIC2.52□□□□□ -2.01
CCDC88AQ3V6T2 AP1B1P2-201ENST00000416196 106 ntBASIC2.52□□□□□ -2.01
CCDC88AQ3V6T2 AC006548.1-201ENST00000427470 102 ntBASIC2.52□□□□□ -2.01
CCDC88AQ3V6T2 RPL23AP58-201ENST00000440453 469 ntBASIC2.52□□□□□ -2.01
CCDC88AQ3V6T2 Z77249.1-201ENST00000444622 1175 ntBASIC2.52□□□□□ -2.01
CCDC88AQ3V6T2 RPS15AP1-201ENST00000457423 391 ntBASIC2.52□□□□□ -2.01
CCDC88AQ3V6T2 LINC02049-201ENST00000490647 747 ntTSL 1 (best) BASIC2.52□□□□□ -2.01
CCDC88AQ3V6T2 OR52A4P-203ENST00000498233 1014 ntBASIC2.52□□□□□ -2.01
CCDC88AQ3V6T2 AC135457.1-201ENST00000503553 664 ntTSL 3 BASIC2.52□□□□□ -2.01
CCDC88AQ3V6T2 RNU6-1053P-201ENST00000515930 101 ntBASIC2.52□□□□□ -2.01
CCDC88AQ3V6T2 MS4A4E-204ENST00000526086 460 ntTSL 1 (best) BASIC2.52□□□□□ -2.01
CCDC88AQ3V6T2 CENPUP2-201ENST00000555897 1186 ntBASIC2.52□□□□□ -2.01
CCDC88AQ3V6T2 MIR5002-201ENST00000584713 97 ntBASIC2.52□□□□□ -2.01
CCDC88AQ3V6T2 AC060766.3-201ENST00000591442 263 ntBASIC2.52□□□□□ -2.01
CCDC88AQ3V6T2 MTCO2P22-201ENST00000603246 681 ntBASIC2.52□□□□□ -2.01
CCDC88AQ3V6T2 CR381572.1-201ENST00000625098 102 ntBASIC2.52□□□□□ -2.01
CCDC88AQ3V6T2 C6orf10-201ENST00000375007 2125 ntAPPRIS ALT2 TSL 5 BASIC2.51□□□□□ -2.01
CCDC88AQ3V6T2 CXADR-205ENST00000400169 1445 ntAPPRIS ALT2 TSL 5 BASIC2.51□□□□□ -2.01
CCDC88AQ3V6T2 NUCB2-220ENST00000622082 1369 ntAPPRIS P2 TSL 5 BASIC2.51□□□□□ -2.01
CCDC88AQ3V6T2 RNU6ATAC38P-201ENST00000408119 126 ntBASIC2.51□□□□□ -2.01
CCDC88AQ3V6T2 AC005160.1-201ENST00000432405 381 ntTSL 3 BASIC2.51□□□□□ -2.01
CCDC88AQ3V6T2 TH2LCRR-202ENST00000435042 472 ntTSL 5 BASIC2.51□□□□□ -2.01
CCDC88AQ3V6T2 CBWD4P-201ENST00000445695 655 ntBASIC2.51□□□□□ -2.01
CCDC88AQ3V6T2 AC104629.2-201ENST00000468627 598 ntBASIC2.51□□□□□ -2.01
CCDC88AQ3V6T2 THAP6-212ENST00000508105 1103 ntTSL 1 (best) BASIC2.51□□□□□ -2.01
CCDC88AQ3V6T2 SNORA31.26-201ENST00000517250 137 ntBASIC2.51□□□□□ -2.01
CCDC88AQ3V6T2 MIR6132-201ENST00000622083 109 ntBASIC2.51□□□□□ -2.01
CCDC88AQ3V6T2 PYGO1-201ENST00000302000 8488 ntTSL 1 (best) BASIC2.51□□□□□ -2.01
CCDC88AQ3V6T2 LINC01021-204ENST00000512067 1610 ntTSL 1 (best) BASIC2.51□□□□□ -2.01
CCDC88AQ3V6T2 AC011978.2-201ENST00000569835 2054 ntBASIC2.51□□□□□ -2.01
CCDC88AQ3V6T2 EFCAB3-202ENST00000450662 1694 ntTSL 5 BASIC2.51□□□□□ -2.01
CCDC88AQ3V6T2 MS4A14-202ENST00000395001 3401 ntTSL 5 BASIC2.5□□□□□ -2.01
CCDC88AQ3V6T2 MTND4P34-201ENST00000572715 1371 ntBASIC2.5□□□□□ -2.01
CCDC88AQ3V6T2 METTL21EP-201ENST00000298105 713 ntBASIC2.5□□□□□ -2.01
CCDC88AQ3V6T2 MIR153-1-201ENST00000384914 90 ntBASIC2.5□□□□□ -2.01
CCDC88AQ3V6T2 RNU6ATAC16P-201ENST00000408591 138 ntBASIC2.5□□□□□ -2.01
CCDC88AQ3V6T2 CTNNA2-204ENST00000409266 432 ntTSL 3 BASIC2.5□□□□□ -2.01
CCDC88AQ3V6T2 RPL7P46-201ENST00000425129 740 ntBASIC2.5□□□□□ -2.01
CCDC88AQ3V6T2 AC109583.1-201ENST00000432156 268 ntBASIC2.5□□□□□ -2.01
CCDC88AQ3V6T2 AL590762.3-201ENST00000436372 640 ntBASIC2.5□□□□□ -2.01
CCDC88AQ3V6T2 AC002386.1-201ENST00000436714 398 ntTSL 2 BASIC2.5□□□□□ -2.01
CCDC88AQ3V6T2 ELOCP13-201ENST00000443934 329 ntBASIC2.5□□□□□ -2.01
CCDC88AQ3V6T2 ARL5AP2-201ENST00000444698 533 ntBASIC2.5□□□□□ -2.01
CCDC88AQ3V6T2 RPL34P26-201ENST00000445636 354 ntBASIC2.5□□□□□ -2.01
CCDC88AQ3V6T2 FABP5P13-201ENST00000452144 328 ntBASIC2.5□□□□□ -2.01
CCDC88AQ3V6T2 AL445669.2-201ENST00000454425 421 ntBASIC2.5□□□□□ -2.01
CCDC88AQ3V6T2 LINC01088-203ENST00000507476 785 ntTSL 3 BASIC2.5□□□□□ -2.01
CCDC88AQ3V6T2 TTC39CP1-201ENST00000512513 755 ntBASIC2.5□□□□□ -2.01
CCDC88AQ3V6T2 RN7SKP96-201ENST00000516948 297 ntBASIC2.5□□□□□ -2.01
CCDC88AQ3V6T2 MIR4303-201ENST00000581299 66 ntBASIC2.5□□□□□ -2.01
CCDC88AQ3V6T2 AC135803.1-201ENST00000608748 565 ntBASIC2.5□□□□□ -2.01
CCDC88AQ3V6T2 AC055764.2-201ENST00000610089 670 ntBASIC2.5□□□□□ -2.01
CCDC88AQ3V6T2 C8orf59-209ENST00000612977 586 ntAPPRIS P1 TSL 2 BASIC2.5□□□□□ -2.01
CCDC88AQ3V6T2 UBE2Q2P2-203ENST00000613592 761 ntBASIC2.5□□□□□ -2.01
CCDC88AQ3V6T2 NEDD4-205ENST00000506154 6751 ntTSL 1 (best) BASIC2.5□□□□□ -2.01
CCDC88AQ3V6T2 MRPL42-202ENST00000393128 1983 ntAPPRIS ALT1 TSL 3 BASIC2.5□□□□□ -2.01
CCDC88AQ3V6T2 RNU6-819P-201ENST00000364116 107 ntBASIC2.5□□□□□ -2.01
CCDC88AQ3V6T2 SNORA25.9-201ENST00000365087 128 ntBASIC2.5□□□□□ -2.01
CCDC88AQ3V6T2 MIR9-3-201ENST00000385084 90 ntBASIC2.5□□□□□ -2.01
CCDC88AQ3V6T2 AL138787.2-202ENST00000479395 385 ntTSL 2 BASIC2.5□□□□□ -2.01
CCDC88AQ3V6T2 PIGY-201ENST00000527353 217 ntAPPRIS P1 BASIC2.5□□□□□ -2.01
CCDC88AQ3V6T2 AL352955.1-201ENST00000555490 332 ntTSL 3 BASIC2.5□□□□□ -2.01
CCDC88AQ3V6T2 IGKV1-33-202ENST00000558152 324 ntAPPRIS ALT2 TSL 5 BASIC2.5□□□□□ -2.01
CCDC88AQ3V6T2 IGKV1D-33-202ENST00000611734 324 ntAPPRIS ALT2 TSL 5 BASIC2.5□□□□□ -2.01
CCDC88AQ3V6T2 AL358975.1-202ENST00000628133 589 ntTSL 5 BASIC2.5□□□□□ -2.01
CCDC88AQ3V6T2 AC103988.1-201ENST00000566382 2177 ntBASIC2.49□□□□□ -2.01
CCDC88AQ3V6T2 ZNF626-204ENST00000612591 4404 ntAPPRIS P1 TSL 5 BASIC2.49□□□□□ -2.01
Retrieved 100 of 98,524 protein–RNA pairs in 76.8 ms