Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 AC007619.1-201ENST00000544086 412 ntTSL 5 BASIC2.31□□□□□ -2.04
FOXA1P55317 AC090971.2-201ENST00000558142 510 ntTSL 3 BASIC2.31□□□□□ -2.04
FOXA1P55317 MTCO1P40-201ENST00000574371 625 ntBASIC2.31□□□□□ -2.04
FOXA1P55317 MIR4789-201ENST00000577469 82 ntBASIC2.31□□□□□ -2.04
FOXA1P55317 AC113368.1-201ENST00000603736 382 ntBASIC2.31□□□□□ -2.04
FOXA1P55317 AC007998.5-201ENST00000622938 237 ntBASIC2.31□□□□□ -2.04
FOXA1P55317 AL160394.1-201ENST00000624765 724 ntBASIC2.31□□□□□ -2.04
FOXA1P55317 AC079228.1-201ENST00000624774 1049 ntBASIC2.31□□□□□ -2.04
FOXA1P55317 Clostridiales-1.2-201ENST00000636724 160 ntBASIC2.31□□□□□ -2.04
FOXA1P55317 AL590396.4-201ENST00000636779 956 ntBASIC2.31□□□□□ -2.04
FOXA1P55317 MARCH6-215ENST00000640713 231 ntTSL 5 BASIC2.31□□□□□ -2.04
FOXA1P55317 SLC30A6-202ENST00000357055 4758 ntTSL 2 BASIC2.31□□□□□ -2.04
FOXA1P55317 LPAR6-209ENST00000620633 2175 ntAPPRIS P1 TSL 5 BASIC2.31□□□□□ -2.04
FOXA1P55317 ZNF734P-201ENST00000419494 1534 ntBASIC2.31□□□□□ -2.04
FOXA1P55317 AC091534.1-201ENST00000548779 1751 ntTSL 2 BASIC2.31□□□□□ -2.04
FOXA1P55317 Z82195.2-201ENST00000612348 18351 ntBASIC2.31□□□□□ -2.04
FOXA1P55317 UHMK1-204ENST00000545294 8117 ntTSL 2 BASIC2.3□□□□□ -2.04
FOXA1P55317 LRRC70-201ENST00000334994 2249 ntAPPRIS P1 TSL 1 (best) BASIC2.3□□□□□ -2.04
FOXA1P55317 RFESD-202ENST00000380005 2587 ntTSL 2 BASIC2.3□□□□□ -2.04
FOXA1P55317 VPS54-202ENST00000354504 3594 ntTSL 1 (best) BASIC2.3□□□□□ -2.04
FOXA1P55317 CUBN-201ENST00000377823 705 ntTSL 3 BASIC2.3□□□□□ -2.04
FOXA1P55317 RNU6-921P-201ENST00000384361 107 ntBASIC2.3□□□□□ -2.04
FOXA1P55317 Y_RNA.493-201ENST00000384422 102 ntBASIC2.3□□□□□ -2.04
FOXA1P55317 MIR16-1-201ENST00000385271 89 ntBASIC2.3□□□□□ -2.04
FOXA1P55317 RNU6-932P-201ENST00000391108 106 ntBASIC2.3□□□□□ -2.04
FOXA1P55317 SFR1P1-201ENST00000403720 688 ntBASIC2.3□□□□□ -2.04
FOXA1P55317 LIMS1-AS1-201ENST00000411710 477 ntTSL 3 BASIC2.3□□□□□ -2.04
FOXA1P55317 AC233981.1-201ENST00000423224 461 ntBASIC2.3□□□□□ -2.04
FOXA1P55317 AL391832.1-201ENST00000423963 423 ntTSL 5 BASIC2.3□□□□□ -2.04
FOXA1P55317 MTCO1P39-201ENST00000426148 480 ntBASIC2.3□□□□□ -2.04
FOXA1P55317 DEFB130D-201ENST00000426866 237 ntBASIC2.3□□□□□ -2.04
FOXA1P55317 MAGEA8-AS1-201ENST00000427671 476 ntTSL 3 BASIC2.3□□□□□ -2.04
FOXA1P55317 CR769767.1-201ENST00000436337 346 ntBASIC2.3□□□□□ -2.04
FOXA1P55317 AL591848.2-201ENST00000442712 522 ntTSL 3 BASIC2.3□□□□□ -2.04
FOXA1P55317 MOB1AP2-201ENST00000446060 614 ntBASIC2.3□□□□□ -2.04
FOXA1P55317 OR51B8P-201ENST00000449892 769 ntBASIC2.3□□□□□ -2.04
FOXA1P55317 Z99714.1-201ENST00000450463 807 ntBASIC2.3□□□□□ -2.04
FOXA1P55317 HMGN3P1-201ENST00000453847 193 ntBASIC2.3□□□□□ -2.04
FOXA1P55317 RPS3P1-201ENST00000456781 192 ntBASIC2.3□□□□□ -2.04
FOXA1P55317 snoU13.3-201ENST00000459441 104 ntBASIC2.3□□□□□ -2.04
FOXA1P55317 RNU7-140P-201ENST00000459546 60 ntBASIC2.3□□□□□ -2.04
FOXA1P55317 CEP70-205ENST00000464035 1054 ntTSL 1 (best) BASIC2.3□□□□□ -2.04
FOXA1P55317 AC004924.1-201ENST00000480160 781 ntBASIC2.3□□□□□ -2.04
FOXA1P55317 AC069439.2-201ENST00000496403 789 ntTSL 2 BASIC2.3□□□□□ -2.04
FOXA1P55317 AC131211.1-201ENST00000497285 483 ntTSL 5 BASIC2.3□□□□□ -2.04
FOXA1P55317 MTCO2P9-201ENST00000503214 694 ntBASIC2.3□□□□□ -2.04
FOXA1P55317 AC011352.3-201ENST00000505162 593 ntBASIC2.3□□□□□ -2.04
FOXA1P55317 LINC01333-201ENST00000508083 724 ntTSL 1 (best) BASIC2.3□□□□□ -2.04
FOXA1P55317 AC026436.1-201ENST00000510537 270 ntBASIC2.3□□□□□ -2.04
FOXA1P55317 MTCO3P44-201ENST00000510977 541 ntBASIC2.3□□□□□ -2.04
FOXA1P55317 RNA5SP356-201ENST00000515972 94 ntBASIC2.3□□□□□ -2.04
FOXA1P55317 SNORA31.1-201ENST00000515993 133 ntBASIC2.3□□□□□ -2.04
FOXA1P55317 SNORA31.5-201ENST00000516190 133 ntBASIC2.3□□□□□ -2.04
FOXA1P55317 RNU6-334P-201ENST00000517072 102 ntBASIC2.3□□□□□ -2.04
FOXA1P55317 PTK2-220ENST00000520151 573 ntTSL 4 BASIC2.3□□□□□ -2.04
FOXA1P55317 AC104248.1-202ENST00000524134 486 ntTSL 5 BASIC2.3□□□□□ -2.04
FOXA1P55317 AC023442.2-201ENST00000526455 270 ntTSL 3 BASIC2.3□□□□□ -2.04
FOXA1P55317 UBTFL10-201ENST00000528532 562 ntBASIC2.3□□□□□ -2.04
FOXA1P55317 OR4R2P-201ENST00000530815 597 ntBASIC2.3□□□□□ -2.04
FOXA1P55317 OR8K4P-201ENST00000534608 872 ntBASIC2.3□□□□□ -2.04
FOXA1P55317 AL049835.1-201ENST00000555850 514 ntTSL 3 BASIC2.3□□□□□ -2.04
FOXA1P55317 MIR4672-201ENST00000583126 81 ntBASIC2.3□□□□□ -2.04
FOXA1P55317 RPL12P50-201ENST00000603116 116 ntBASIC2.3□□□□□ -2.04
FOXA1P55317 AC006023.1-201ENST00000603944 259 ntBASIC2.3□□□□□ -2.04
FOXA1P55317 AC073387.2-201ENST00000604797 784 ntBASIC2.3□□□□□ -2.04
FOXA1P55317 AL590282.1-201ENST00000610379 1136 ntBASIC2.3□□□□□ -2.04
FOXA1P55317 U4.3-201ENST00000621047 82 ntBASIC2.3□□□□□ -2.04
FOXA1P55317 AL590227.1-201ENST00000622616 315 ntTSL 5 BASIC2.3□□□□□ -2.04
FOXA1P55317 AC098679.5-201ENST00000624394 571 ntBASIC2.3□□□□□ -2.04
FOXA1P55317 AL139220.2-223ENST00000625982 921 ntTSL 5 BASIC2.3□□□□□ -2.04
FOXA1P55317 SGO1P1-201ENST00000603525 1447 ntBASIC2.3□□□□□ -2.04
FOXA1P55317 CCDC68-201ENST00000337363 1457 ntAPPRIS P1 TSL 2 BASIC2.3□□□□□ -2.04
FOXA1P55317 PLS1-201ENST00000337777 3755 ntAPPRIS P1 TSL 1 (best) BASIC2.3□□□□□ -2.04
FOXA1P55317 TMEM68-218ENST00000617782 2477 ntAPPRIS P1 TSL 5 BASIC2.29□□□□□ -2.04
FOXA1P55317 VTRNA1-1-201ENST00000363120 99 ntBASIC2.29□□□□□ -2.04
FOXA1P55317 RFPL3S-202ENST00000382086 455 ntAPPRIS ALT2 TSL 2 BASIC2.29□□□□□ -2.04
FOXA1P55317 OR5H15-201ENST00000383696 930 ntBASIC2.29□□□□□ -2.04
FOXA1P55317 AL139095.1-201ENST00000404326 391 ntBASIC2.29□□□□□ -2.04
FOXA1P55317 RNU4-78P-201ENST00000410940 126 ntBASIC2.29□□□□□ -2.04
FOXA1P55317 AL159990.1-201ENST00000415119 337 ntTSL 3 BASIC2.29□□□□□ -2.04
FOXA1P55317 TRBV24OR9-2-201ENST00000416632 435 ntBASIC2.29□□□□□ -2.04
FOXA1P55317 NUP35P1-201ENST00000422734 947 ntBASIC2.29□□□□□ -2.04
FOXA1P55317 AC013402.2-201ENST00000424257 437 ntTSL 3 BASIC2.29□□□□□ -2.04
FOXA1P55317 LINC00457-201ENST00000428706 413 ntTSL 3 BASIC2.29□□□□□ -2.04
FOXA1P55317 AL159990.2-201ENST00000436491 337 ntTSL 3 BASIC2.29□□□□□ -2.04
FOXA1P55317 AC104389.3-201ENST00000445629 235 ntBASIC2.29□□□□□ -2.04
FOXA1P55317 AL109933.2-201ENST00000452651 260 ntBASIC2.29□□□□□ -2.04
FOXA1P55317 NECAP1P2-201ENST00000455668 727 ntBASIC2.29□□□□□ -2.04
FOXA1P55317 LINC00888-204ENST00000487386 421 ntBASIC2.29□□□□□ -2.04
FOXA1P55317 RPL21P131-201ENST00000497298 483 ntBASIC2.29□□□□□ -2.04
FOXA1P55317 ZBTB20-AS3-201ENST00000498630 464 ntTSL 3 BASIC2.29□□□□□ -2.04
FOXA1P55317 AC008628.1-201ENST00000508663 265 ntBASIC2.29□□□□□ -2.04
FOXA1P55317 LINC01256-201ENST00000513270 508 ntTSL 2 BASIC2.29□□□□□ -2.04
FOXA1P55317 AC012182.1-201ENST00000570133 895 ntBASIC2.29□□□□□ -2.04
FOXA1P55317 AC074051.3-201ENST00000570238 358 ntBASIC2.29□□□□□ -2.04
FOXA1P55317 AC004542.1-201ENST00000602955 264 ntTSL 3 BASIC2.29□□□□□ -2.04
FOXA1P55317 AP002906.1-201ENST00000603405 233 ntBASIC2.29□□□□□ -2.04
FOXA1P55317 AC025588.3-201ENST00000604182 274 ntBASIC2.29□□□□□ -2.04
FOXA1P55317 AC091046.2-201ENST00000620775 665 ntBASIC2.29□□□□□ -2.04
FOXA1P55317 ATXN3L-202ENST00000622204 837 ntTSL 5 BASIC2.29□□□□□ -2.04
Retrieved 100 of 98,524 protein–RNA pairs in 100.8 ms