Protein–RNA interactions for Protein: P52701

MSH6, DNA mismatch repair protein Msh6, humanhuman

Predictions only

Length 1,360 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6P52701 ARID2-206ENST00000457135 4356 ntTSL 1 (best) BASIC3.27□□□□□ -1.89
MSH6P52701 SPAM1-202ENST00000340011 2349 ntAPPRIS P4 TSL 1 (best) BASIC3.27□□□□□ -1.89
MSH6P52701 MTCO1P4-201ENST00000520516 1409 ntBASIC3.27□□□□□ -1.89
MSH6P52701 AC069528.2-201ENST00000624849 1991 ntBASIC3.27□□□□□ -1.89
MSH6P52701 HTR2B-201ENST00000258400 2246 ntAPPRIS P1 TSL 1 (best) BASIC3.27□□□□□ -1.89
MSH6P52701 TSHB-201ENST00000256592 537 ntAPPRIS P1 TSL 5 BASIC3.26□□□□□ -1.89
MSH6P52701 MIR16-2-201ENST00000362117 81 ntBASIC3.26□□□□□ -1.89
MSH6P52701 RNA5SP88-201ENST00000365560 109 ntBASIC3.26□□□□□ -1.89
MSH6P52701 DNAH14-203ENST00000366848 929 ntTSL 1 (best) BASIC3.26□□□□□ -1.89
MSH6P52701 RNU6-481P-201ENST00000384194 107 ntBASIC3.26□□□□□ -1.89
MSH6P52701 U8.13-201ENST00000390842 128 ntBASIC3.26□□□□□ -1.89
MSH6P52701 AL450338.1-201ENST00000407987 512 ntBASIC3.26□□□□□ -1.89
MSH6P52701 NUP35P2-201ENST00000416748 943 ntBASIC3.26□□□□□ -1.89
MSH6P52701 MTND1P33-201ENST00000446251 917 ntBASIC3.26□□□□□ -1.89
MSH6P52701 HMGN2P21-201ENST00000447764 270 ntBASIC3.26□□□□□ -1.89
MSH6P52701 TMEM247-203ENST00000449601 741 ntTSL 1 (best) BASIC3.26□□□□□ -1.89
MSH6P52701 AGBL4-IT1-201ENST00000457061 514 ntTSL 3 BASIC3.26□□□□□ -1.89
MSH6P52701 RPL7P5-201ENST00000471472 736 ntBASIC3.26□□□□□ -1.89
MSH6P52701 SOX2-OT-207ENST00000476964 606 ntTSL 1 (best) BASIC3.26□□□□□ -1.89
MSH6P52701 AC010265.1-201ENST00000513509 211 ntBASIC3.26□□□□□ -1.89
MSH6P52701 C11orf1-204ENST00000530214 599 ntTSL 5 BASIC3.26□□□□□ -1.89
MSH6P52701 OR5BN1P-201ENST00000532955 829 ntBASIC3.26□□□□□ -1.89
MSH6P52701 RAP1B-224ENST00000541216 701 ntTSL 1 (best) BASIC3.26□□□□□ -1.89
MSH6P52701 OR5V1-216ENST00000543825 1048 ntAPPRIS P1 BASIC3.26□□□□□ -1.89
MSH6P52701 MACROD2-IT1-202ENST00000605675 575 ntTSL 5 BASIC3.26□□□□□ -1.89
MSH6P52701 MIR8084-201ENST00000614105 89 ntBASIC3.26□□□□□ -1.89
MSH6P52701 AC073348.1-201ENST00000623002 331 ntBASIC3.26□□□□□ -1.89
MSH6P52701 AC048347.1-201ENST00000624621 427 ntBASIC3.26□□□□□ -1.89
MSH6P52701 RICTOR-202ENST00000357387 9543 ntAPPRIS P1 TSL 1 (best) BASIC3.26□□□□□ -1.89
MSH6P52701 LIPI-204ENST00000614229 1439 ntTSL 1 (best) BASIC3.26□□□□□ -1.89
MSH6P52701 AL161431.1-201ENST00000618966 4205 ntBASIC3.26□□□□□ -1.89
MSH6P52701 CHD9-203ENST00000447540 11509 ntTSL 5 BASIC3.26□□□□□ -1.89
MSH6P52701 OR8K3-204ENST00000641689 2380 ntAPPRIS P1 BASIC3.26□□□□□ -1.89
MSH6P52701 SNORD21-201ENST00000383953 95 ntBASIC3.25□□□□□ -1.89
MSH6P52701 SNORA26.9-201ENST00000391322 122 ntBASIC3.25□□□□□ -1.89
MSH6P52701 BTBD10P2-201ENST00000404779 676 ntBASIC3.25□□□□□ -1.89
MSH6P52701 AL357833.2-201ENST00000426811 430 ntTSL 3 BASIC3.25□□□□□ -1.89
MSH6P52701 MIR4435-2HG-206ENST00000432818 572 ntTSL 5 BASIC3.25□□□□□ -1.89
MSH6P52701 NEK4P1-201ENST00000433383 879 ntBASIC3.25□□□□□ -1.89
MSH6P52701 LINC01309-201ENST00000444795 492 ntTSL 3 BASIC3.25□□□□□ -1.89
MSH6P52701 AC121161.1-201ENST00000510606 652 ntBASIC3.25□□□□□ -1.89
MSH6P52701 RN7SKP277-201ENST00000516895 283 ntBASIC3.25□□□□□ -1.89
MSH6P52701 NRG1-IT1-203ENST00000523743 292 ntTSL 3 BASIC3.25□□□□□ -1.89
MSH6P52701 AP003717.3-201ENST00000544832 1180 ntBASIC3.25□□□□□ -1.89
MSH6P52701 AC007610.2-201ENST00000566770 666 ntTSL 3 BASIC3.25□□□□□ -1.89
MSH6P52701 MIR5092-201ENST00000583139 88 ntBASIC3.25□□□□□ -1.89
MSH6P52701 LLPHP1-201ENST00000603571 367 ntBASIC3.25□□□□□ -1.89
MSH6P52701 AC019080.3-201ENST00000606180 444 ntTSL 5 BASIC3.25□□□□□ -1.89
MSH6P52701 AL512506.1-201ENST00000613918 449 ntBASIC3.25□□□□□ -1.89
MSH6P52701 CASC1-205ENST00000545133 2146 ntAPPRIS ALT2 TSL 2 BASIC3.25□□□□□ -1.89
MSH6P52701 CLEC4A-201ENST00000229332 1281 ntAPPRIS P1 TSL 1 (best) BASIC3.25□□□□□ -1.89
MSH6P52701 SNORA31-201ENST00000362607 130 ntBASIC3.25□□□□□ -1.89
MSH6P52701 Y_RNA.118-201ENST00000363300 101 ntBASIC3.25□□□□□ -1.89
MSH6P52701 TRAJ26-201ENST00000390511 60 ntAPPRIS P1 BASIC3.25□□□□□ -1.89
MSH6P52701 HIGD1C-201ENST00000398455 371 ntAPPRIS P1 TSL 1 (best) BASIC3.25□□□□□ -1.89
MSH6P52701 FBXO11-203ENST00000405808 299 ntTSL 5 BASIC3.25□□□□□ -1.89
MSH6P52701 RPS15AP40-201ENST00000419621 391 ntBASIC3.25□□□□□ -1.89
MSH6P52701 AC005165.1-203ENST00000423689 1281 ntTSL 3 BASIC3.25□□□□□ -1.89
MSH6P52701 AC092170.1-201ENST00000440211 356 ntBASIC3.25□□□□□ -1.89
MSH6P52701 RPS26P30-201ENST00000443431 335 ntBASIC3.25□□□□□ -1.89
MSH6P52701 RPL7P55-201ENST00000450522 746 ntBASIC3.25□□□□□ -1.89
MSH6P52701 LINC00430-201ENST00000457672 597 ntTSL 3 BASIC3.25□□□□□ -1.89
MSH6P52701 AL049548.1-201ENST00000458194 385 ntTSL 2 BASIC3.25□□□□□ -1.89
MSH6P52701 AC015724.1-201ENST00000478577 156 ntBASIC3.25□□□□□ -1.89
MSH6P52701 AC020651.1-201ENST00000490324 360 ntTSL 3 BASIC3.25□□□□□ -1.89
MSH6P52701 AC099520.1-203ENST00000506976 464 ntTSL 3 BASIC3.25□□□□□ -1.89
MSH6P52701 SEMA6A-AS2-201ENST00000508766 482 ntTSL 3 BASIC3.25□□□□□ -1.89
MSH6P52701 AC112673.1-201ENST00000513168 575 ntBASIC3.25□□□□□ -1.89
MSH6P52701 RNU4-60P-201ENST00000517239 135 ntBASIC3.25□□□□□ -1.89
MSH6P52701 CCDC179-202ENST00000532798 791 ntAPPRIS P1 TSL 2 BASIC3.25□□□□□ -1.89
MSH6P52701 AL135746.1-201ENST00000554205 547 ntTSL 3 BASIC3.25□□□□□ -1.89
MSH6P52701 OR4T1P-201ENST00000554933 911 ntBASIC3.25□□□□□ -1.89
MSH6P52701 AC135628.1-201ENST00000568867 534 ntBASIC3.25□□□□□ -1.89
MSH6P52701 MIR5007-201ENST00000583098 95 ntBASIC3.25□□□□□ -1.89
MSH6P52701 MIR4781-201ENST00000585250 76 ntBASIC3.25□□□□□ -1.89
MSH6P52701 AC023043.2-201ENST00000589678 1026 ntBASIC3.25□□□□□ -1.89
MSH6P52701 VN1R88P-201ENST00000596787 292 ntBASIC3.25□□□□□ -1.89
MSH6P52701 PIGX-211ENST00000639474 777 ntAPPRIS P3 TSL 1 (best) BASIC3.25□□□□□ -1.89
MSH6P52701 ASPM-202ENST00000367408 3747 ntTSL 1 (best) BASIC3.24□□□□□ -1.89
MSH6P52701 TTK-202ENST00000369798 3010 ntAPPRIS P3 TSL 1 (best) BASIC3.24□□□□□ -1.89
MSH6P52701 MTND5P29-201ENST00000458676 1807 ntBASIC3.24□□□□□ -1.89
MSH6P52701 AC092447.7-201ENST00000422212 1621 ntBASIC3.24□□□□□ -1.89
MSH6P52701 AC016716.1-201ENST00000265882 708 ntBASIC3.24□□□□□ -1.89
MSH6P52701 KLRC2-202ENST00000381902 1221 ntAPPRIS P2 TSL 1 (best) BASIC3.24□□□□□ -1.89
MSH6P52701 SNORA80E-201ENST00000384744 137 ntBASIC3.24□□□□□ -1.89
MSH6P52701 OR6C4-201ENST00000394256 1046 ntAPPRIS P1 BASIC3.24□□□□□ -1.89
MSH6P52701 SAR1AP4-201ENST00000429225 591 ntBASIC3.24□□□□□ -1.89
MSH6P52701 AP000855.1-201ENST00000433210 636 ntTSL 2 BASIC3.24□□□□□ -1.89
MSH6P52701 LINC01802-201ENST00000438824 523 ntTSL 3 BASIC3.24□□□□□ -1.89
MSH6P52701 AC007677.1-201ENST00000445757 515 ntBASIC3.24□□□□□ -1.89
MSH6P52701 MTCO3P11-201ENST00000455103 774 ntBASIC3.24□□□□□ -1.89
MSH6P52701 BX248409.1-201ENST00000455497 255 ntBASIC3.24□□□□□ -1.89
MSH6P52701 AC146507.1-201ENST00000468335 354 ntBASIC3.24□□□□□ -1.89
MSH6P52701 ENSA-210ENST00000503241 574 ntTSL 3 BASIC3.24□□□□□ -1.89
MSH6P52701 AC110009.1-201ENST00000512965 451 ntTSL 5 BASIC3.24□□□□□ -1.89
MSH6P52701 AC007876.1-201ENST00000527562 983 ntTSL 1 (best) BASIC3.24□□□□□ -1.89
MSH6P52701 OR7K1P-201ENST00000546439 926 ntBASIC3.24□□□□□ -1.89
MSH6P52701 AC063948.1-201ENST00000547360 379 ntTSL 5 BASIC3.24□□□□□ -1.89
MSH6P52701 AC124283.4-201ENST00000581815 456 ntBASIC3.24□□□□□ -1.89
MSH6P52701 MAGOH2P-202ENST00000584384 429 ntBASIC3.24□□□□□ -1.89
Retrieved 100 of 98,524 protein–RNA pairs in 110.7 ms