Protein–RNA interactions for Protein: P49711

CTCF, Transcriptional repressor CTCF, humanhuman

Predicted RBP Predictions only

Length 727 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTCFP49711 AP000550.2-201ENST00000417463 774 ntTSL 5 BASIC4.12□□□□□ -1.75
CTCFP49711 LINC01427-201ENST00000420928 504 ntTSL 3 BASIC4.12□□□□□ -1.75
CTCFP49711 ATP6V0E1P4-201ENST00000427294 242 ntBASIC4.12□□□□□ -1.75
CTCFP49711 OFD1P12Y-201ENST00000427963 1207 ntBASIC4.12□□□□□ -1.75
CTCFP49711 OFD1P13Y-201ENST00000431179 1232 ntBASIC4.12□□□□□ -1.75
CTCFP49711 AP000552.3-201ENST00000434730 775 ntTSL 5 BASIC4.12□□□□□ -1.75
CTCFP49711 AL161725.2-201ENST00000442442 403 ntTSL 3 BASIC4.12□□□□□ -1.75
CTCFP49711 EEF1E1P1-201ENST00000446998 430 ntBASIC4.12□□□□□ -1.75
CTCFP49711 AL158210.1-201ENST00000448835 500 ntTSL 3 BASIC4.12□□□□□ -1.75
CTCFP49711 AL442647.1-201ENST00000449485 481 ntTSL 5 BASIC4.12□□□□□ -1.75
CTCFP49711 AL157373.1-201ENST00000456036 276 ntTSL 3 BASIC4.12□□□□□ -1.75
CTCFP49711 LINC00888-204ENST00000487386 421 ntBASIC4.12□□□□□ -1.75
CTCFP49711 AC006445.1-201ENST00000491925 405 ntBASIC4.12□□□□□ -1.75
CTCFP49711 LINC00492-201ENST00000504436 593 ntTSL 3 BASIC4.12□□□□□ -1.75
CTCFP49711 VN1R104P-201ENST00000505115 1009 ntBASIC4.12□□□□□ -1.75
CTCFP49711 AC010486.2-201ENST00000505572 483 ntBASIC4.12□□□□□ -1.75
CTCFP49711 AC096577.1-203ENST00000506386 541 ntTSL 3 BASIC4.12□□□□□ -1.75
CTCFP49711 AC095057.2-201ENST00000515422 553 ntTSL 4 BASIC4.12□□□□□ -1.75
CTCFP49711 RNU6-150P-201ENST00000516237 95 ntBASIC4.12□□□□□ -1.75
CTCFP49711 AC026904.2-201ENST00000521359 537 ntTSL 3 BASIC4.12□□□□□ -1.75
CTCFP49711 NAP1L1P1-201ENST00000524793 1063 ntBASIC4.12□□□□□ -1.75
CTCFP49711 OR5D17P-201ENST00000531492 978 ntBASIC4.12□□□□□ -1.75
CTCFP49711 AL121603.1-201ENST00000553815 142 ntBASIC4.12□□□□□ -1.75
CTCFP49711 AC008015.1-201ENST00000555505 465 ntBASIC4.12□□□□□ -1.75
CTCFP49711 ALDH3A2-208ENST00000571163 590 ntTSL 5 BASIC4.12□□□□□ -1.75
CTCFP49711 AC018714.1-201ENST00000605028 208 ntBASIC4.12□□□□□ -1.75
CTCFP49711 SOX2OT_exon1.1-201ENST00000614902 232 ntBASIC4.12□□□□□ -1.75
CTCFP49711 ST7-OT4_4.1-201ENST00000614993 213 ntBASIC4.12□□□□□ -1.75
CTCFP49711 AC018692.3-201ENST00000623929 123 ntBASIC4.12□□□□□ -1.75
CTCFP49711 AC026422.1-201ENST00000623961 452 ntBASIC4.12□□□□□ -1.75
CTCFP49711 UACA-202ENST00000379983 4859 ntAPPRIS ALT2 TSL 5 BASIC4.12□□□□□ -1.75
CTCFP49711 AP001486.2-201ENST00000561652 5113 ntBASIC4.12□□□□□ -1.75
CTCFP49711 GABPAP-201ENST00000419271 1356 ntBASIC4.12□□□□□ -1.75
CTCFP49711 AL359693.1-201ENST00000614959 2407 ntBASIC4.12□□□□□ -1.75
CTCFP49711 CEP57L1-201ENST00000359793 2515 ntAPPRIS P3 TSL 1 (best) BASIC4.12□□□□□ -1.75
CTCFP49711 Z83843.1-201ENST00000604070 3685 ntBASIC4.11□□□□□ -1.75
CTCFP49711 ATP2B1-202ENST00000359142 6977 ntTSL 5 BASIC4.11□□□□□ -1.75
CTCFP49711 IPO8P1-201ENST00000455509 3109 ntBASIC4.11□□□□□ -1.75
CTCFP49711 KIAA1107-203ENST00000637221 4337 ntTSL 1 (best) BASIC4.11□□□□□ -1.75
CTCFP49711 DEFB110-201ENST00000371148 384 ntAPPRIS P3 TSL 1 (best) BASIC4.11□□□□□ -1.75
CTCFP49711 RNA5SP424-201ENST00000390988 115 ntBASIC4.11□□□□□ -1.75
CTCFP49711 AL356131.1-201ENST00000405826 414 ntBASIC4.11□□□□□ -1.75
CTCFP49711 RNU4-47P-201ENST00000410876 114 ntBASIC4.11□□□□□ -1.75
CTCFP49711 AL663023.1-201ENST00000412932 853 ntTSL 3 BASIC4.11□□□□□ -1.75
CTCFP49711 TEX41-202ENST00000414256 604 ntTSL 5 BASIC4.11□□□□□ -1.75
CTCFP49711 TPMTP2-201ENST00000414372 726 ntBASIC4.11□□□□□ -1.75
CTCFP49711 AL121872.1-201ENST00000420327 281 ntTSL 5 BASIC4.11□□□□□ -1.75
CTCFP49711 RPL7P30-201ENST00000420888 709 ntBASIC4.11□□□□□ -1.75
CTCFP49711 GLRXP1-201ENST00000423261 334 ntBASIC4.11□□□□□ -1.75
CTCFP49711 AC010095.1-201ENST00000443543 144 ntBASIC4.11□□□□□ -1.75
CTCFP49711 ARPC3P5-201ENST00000448802 534 ntBASIC4.11□□□□□ -1.75
CTCFP49711 AC005297.2-201ENST00000450430 606 ntBASIC4.11□□□□□ -1.75
CTCFP49711 AL133217.1-201ENST00000450980 425 ntBASIC4.11□□□□□ -1.75
CTCFP49711 AC093422.2-201ENST00000452599 686 ntTSL 2 BASIC4.11□□□□□ -1.75
CTCFP49711 Z98749.1-201ENST00000454123 541 ntTSL 5 BASIC4.11□□□□□ -1.75
CTCFP49711 AL445669.2-201ENST00000454425 421 ntBASIC4.11□□□□□ -1.75
CTCFP49711 APOA2-205ENST00000468465 421 ntTSL 2 BASIC4.11□□□□□ -1.75
CTCFP49711 TRBV12-1-201ENST00000479785 344 ntBASIC4.11□□□□□ -1.75
CTCFP49711 AC104685.1-201ENST00000502445 371 ntBASIC4.11□□□□□ -1.75
CTCFP49711 AC097372.3-201ENST00000503593 522 ntTSL 3 BASIC4.11□□□□□ -1.75
CTCFP49711 LINC02229-201ENST00000508486 661 ntTSL 3 BASIC4.11□□□□□ -1.75
CTCFP49711 HTN1-204ENST00000511674 623 ntAPPRIS P1 TSL 2 BASIC4.11□□□□□ -1.75
CTCFP49711 RNA5SP356-201ENST00000515972 94 ntBASIC4.11□□□□□ -1.75
CTCFP49711 ZFPM2-AS1-204ENST00000520433 748 ntTSL 3 BASIC4.11□□□□□ -1.75
CTCFP49711 AL139174.1-201ENST00000531489 886 ntBASIC4.11□□□□□ -1.75
CTCFP49711 AC005225.1-201ENST00000553394 937 ntTSL 3 BASIC4.11□□□□□ -1.75
CTCFP49711 ZNF192P1-203ENST00000565888 810 ntBASIC4.11□□□□□ -1.75
CTCFP49711 LINC01900-203ENST00000585185 393 ntTSL 3 BASIC4.11□□□□□ -1.75
CTCFP49711 ZEB2-AS1-204ENST00000595109 855 ntTSL 5 BASIC4.11□□□□□ -1.75
CTCFP49711 AC080013.4-201ENST00000607624 649 ntBASIC4.11□□□□□ -1.75
CTCFP49711 AC024560.3-201ENST00000608482 349 ntBASIC4.11□□□□□ -1.75
CTCFP49711 AL591424.2-201ENST00000617023 128 ntBASIC4.11□□□□□ -1.75
CTCFP49711 AC079228.1-201ENST00000624774 1049 ntBASIC4.11□□□□□ -1.75
CTCFP49711 ARID2-206ENST00000457135 4356 ntTSL 1 (best) BASIC4.11□□□□□ -1.75
CTCFP49711 RNF17-204ENST00000339524 2203 ntTSL 2 BASIC4.11□□□□□ -1.75
CTCFP49711 PHC3-215ENST00000495893 12666 ntAPPRIS P1 TSL 1 (best) BASIC4.11□□□□□ -1.75
CTCFP49711 SLC38A9-201ENST00000318672 2369 ntAPPRIS P1 TSL 2 BASIC4.11□□□□□ -1.75
CTCFP49711 FNDC3A-202ENST00000398316 5714 ntTSL 1 (best) BASIC4.1□□□□□ -1.75
CTCFP49711 OR9G4-204ENST00000641668 2608 ntAPPRIS P1 BASIC4.1□□□□□ -1.75
CTCFP49711 CLCA4-201ENST00000370563 3211 ntAPPRIS P1 TSL 1 (best) BASIC4.1□□□□□ -1.75
CTCFP49711 AC087521.2-201ENST00000499066 2190 ntTSL 2 BASIC4.1□□□□□ -1.75
CTCFP49711 LINC01828-203ENST00000452716 3250 ntTSL 5 BASIC4.1□□□□□ -1.75
CTCFP49711 UBE3AP2-201ENST00000429033 2259 ntBASIC4.1□□□□□ -1.75
CTCFP49711 RNU4-82P-201ENST00000362443 140 ntBASIC4.1□□□□□ -1.75
CTCFP49711 C20orf187-201ENST00000378252 446 ntTSL 2 BASIC4.1□□□□□ -1.75
CTCFP49711 RNU6-878P-201ENST00000384578 110 ntBASIC4.1□□□□□ -1.75
CTCFP49711 LINC02089-201ENST00000412360 682 ntTSL 2 BASIC4.1□□□□□ -1.75
CTCFP49711 DBIP2-201ENST00000419076 262 ntBASIC4.1□□□□□ -1.75
CTCFP49711 DNAJA1P2-201ENST00000421360 1197 ntBASIC4.1□□□□□ -1.75
CTCFP49711 AL139281.1-201ENST00000422120 335 ntBASIC4.1□□□□□ -1.75
CTCFP49711 RPL35AP12-201ENST00000425362 338 ntBASIC4.1□□□□□ -1.75
CTCFP49711 AC007271.1-201ENST00000428188 382 ntTSL 3 BASIC4.1□□□□□ -1.75
CTCFP49711 PSMA6P3-201ENST00000428242 164 ntBASIC4.1□□□□□ -1.75
CTCFP49711 ATP5HP2-201ENST00000433885 485 ntBASIC4.1□□□□□ -1.75
CTCFP49711 KCTD9P3-201ENST00000434597 1169 ntBASIC4.1□□□□□ -1.75
CTCFP49711 SNORA71B-202ENST00000439232 272 ntBASIC4.1□□□□□ -1.75
CTCFP49711 RPL23AP35-201ENST00000451906 501 ntBASIC4.1□□□□□ -1.75
CTCFP49711 AC097262.1-201ENST00000452559 548 ntBASIC4.1□□□□□ -1.75
CTCFP49711 C1orf185-202ENST00000467127 747 ntAPPRIS ALT2 TSL 3 BASIC4.1□□□□□ -1.75
CTCFP49711 ARNTL2-AS1-201ENST00000500498 804 ntTSL 1 (best) BASIC4.1□□□□□ -1.75
Retrieved 100 of 98,524 protein–RNA pairs in 108.4 ms